Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_33657	LG9	47217833	47222241	PREDICTED: probable protein phosphatase 2C 52	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	47217891	5_prime_UTR_variant
C/A	47217936	5_prime_UTR_variant
A/T	47217996	upstream_gene_variant
A/C	47218019	upstream_gene_variant
A/C	47218178	upstream_gene_variant
T/A	47218182	upstream_gene_variant
C/T	47218187	upstream_gene_variant
G/A	47218283	upstream_gene_variant
A/T	47218284	upstream_gene_variant
T/C	47218313	upstream_gene_variant
C/T	47218510	upstream_gene_variant
C/T	47218579	5_prime_UTR_premature_start_codon_gain_variant
A/T	47218659	5_prime_UTR_variant
T/C	47218675	5_prime_UTR_variant
C/A	47218704	5_prime_UTR_variant
G/A	47218711	5_prime_UTR_variant
T/C	47218793	intron_variant
A/G	47218811	intron_variant
T/C	47218910	intron_variant
A/C	47218921	intron_variant
G/C	47218922	intron_variant
T/A	47218923	intron_variant
T/A	47218924	intron_variant
T/G	47218930	intron_variant
G/A	47219126	intron_variant
T/A	47219188	intron_variant
C/G	47219260	splice_region_variant&intron_variant
T/C	47219275	5_prime_UTR_variant
G/T	47219460	5_prime_UTR_variant
A/G	47219548	missense_variant	p.Asn14Ser
G/T	47219789	intron_variant
A/T	47219850	intron_variant
T/A	47220029	synonymous_variant	p.Gly137Gly
A/T	47220133	missense_variant	p.Lys172Met
G/A	47220184	missense_variant	p.Cys189Tyr
A/C	47220238	intron_variant
C/T	47220486	intron_variant
A/C	47220782	intron_variant
A/C	47220834	intron_variant
C/T	47220899	intron_variant
G/A	47220967	intron_variant
G/C	47221000	intron_variant
G/T	47221003	intron_variant
G/T	47221006	intron_variant
G/T	47221097	intron_variant
T/C	47221114	intron_variant
G/A	47221351	intron_variant
G/C	47221356	intron_variant
T/A	47221379	splice_region_variant&intron_variant
C/A	47221625	synonymous_variant	p.Gly396Gly
G/A	47221709	synonymous_variant	p.Gly424Gly
G/C	47221764	missense_variant	p.Val443Leu
G/C	47221816	missense_variant	p.Ser460Thr
G/A	47221933	3_prime_UTR_variant
C/A	47221984	3_prime_UTR_variant
A/C	47221988	3_prime_UTR_variant
G/T	47222072	3_prime_UTR_variant
T/A	47222117	3_prime_UTR_variant
T/G	47222184	3_prime_UTR_variant
T/A	47222214	3_prime_UTR_variant
T/A	47222220	3_prime_UTR_variant
C/G	47222222	3_prime_UTR_variant
G/A	47222229	3_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_33657.1

MGCCVSTSSQSARNSRSTGDTNVQTCLEIGFCGQKSARRTFSDHVISLHQLPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFISEDVTFCGVFDGHGPHGHLVARKVREALPLKLLSFLHSSESGQNDSGKTCFRGSMKPESGESEKDVAAEDKLNSMWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTVVKQGSNLFMGNIGDSRAIMGSKDINDVMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVHRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDQFIVLASDGIWDVLSNEEVVEIVSSAPSRSSAARILVDSAAREWKLKYPTSKVDDCAVVCLFLDGKMDSESDCEEQCFSSAIMQSNHSGNLVETDDGQKYEPTLQRNFTVRSSEENGRYGGRGGVSVDVVEDGNSVVPSGPEDQNWLGLEGVSRVNSLVQLPRFSEEKPNC*

>Vu_33657.2

CDS Sequence:
>Vu_33657.1

ATGGGTTGCTGTGTCTCAACAAGTAGTCAGAGTGCTCGTAACAGCAGGAGCACTGGAGACACAAACGTTCAGACGTGTCTAGAAATAGGATTCTGTGGTCAAAAGAGTGCAAGGAGAACATTCTCTGACCATGTTATCTCTCTGCACCAGTTACCATCTTTACCCAACAGAATTTTCACCAATGGAAAGAGCAGGTCTTCTTGCATATTTACACAGCAGGGTCGTAAGGGGATTAATCAGGACGCCATGATTGTATGGGAAGATTTCATTTCAGAAGATGTGACCTTTTGTGGTGTCTTTGATGGCCACGGTCCACACGGTCACCTTGTTGCACGCAAAGTCCGGGAAGCCTTGCCACTAAAATTGCTTTCATTTTTGCATTCCTCGGAATCAGGGCAAAATGATTCAGGTAAAACTTGTTTCAGAGGCAGCATGAAGCCTGAAAGTGGAGAGTCTGAGAAAGATGTTGCTGCTGAAGATAAACTGAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAAAGAGCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTCACTGTAGTGAAACAGGGTTCAAATTTGTTCATGGGCAATATTGGGGATTCCCGAGCAATCATGGGATCCAAGGACATCAATGATGTCATGGTGGCAATTCAGTTGACCGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATCAAACGATGCAAGGGTAGGGTATTTGCATTACAAGATGAGCCAGAAGTTCATAGGGTATGGTTACCTTTTGATGATGCACCAGGATTAGCAATGGCTCGAGCATTTGGAGATTTTTGCTTGAAGGAATACGGTGTGATTTCTATACCTGAATTTTCTCATCGGTTACTAACAGACAAAGATCAGTTCATTGTTCTTGCCTCAGATGGGATCTGGGATGTTTTGAGCAACGAAGAGGTAGTTGAGATTGTATCTTCAGCACCAAGTCGATCATCAGCAGCAAGAATTCTGGTGGATTCGGCGGCTCGAGAGTGGAAACTTAAGTATCCTACTTCAAAAGTGGATGACTGTGCTGTTGTGTGCCTGTTTCTGGATGGAAAAATGGATTCAGAATCTGACTGTGAGGAGCAATGCTTCTCTTCTGCTATCATGCAGAGCAACCATTCAGGCAATCTGGTTGAGACAGATGATGGACAAAAGTATGAGCCAACTTTGCAAAGGAACTTTACAGTGAGATCCTCAGAAGAAAATGGGAGGTATGGAGGAAGAGGAGGAGTATCTGTTGATGTTGTTGAAGATGGAAACTCAGTGGTTCCATCAGGGCCTGAAGATCAAAACTGGTTAGGTTTGGAGGGTGTGAGCCGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCTGAGGAAAAGCCAAACTGTTGA

>Vu_33657.2

Promoter Sequence:
>Vu_33657::LG9:47215833-47217833(+)

TTAAGCCTAGGACTAGGCAAAATCCATATACTACAACATTCTATTACTCTTCATTACATAACATTTCTACTTTATTTGAGTGTTAATAGTTATTAAAGCCTTAGAATACTCCCTTAGTGATCTCATATGTCAATGCATACATAAAGTTATCACCATAAAGAATTTTTTCTTGAAATTTCTTCAAAATCATCACCATATATGTCTATAACCATATCATCTCCTTAATTAATAATAAACAACATTATAAACATAATTAGTTCTGTTACAAATTTATCTCAAACAGTAAAAGAAGAAAACAAATCCAATTATACAAACTGACACTTAAATGTGGCACTTAGCGCCAAACCTTTCGCAAAGAGTGACACTCAGTGACAATATTGAATCTCAACACCATTCTTCTCGCAAAAGTTTACGGTTAGCGACACTTTCTGTCACCTAGCGTCCTAGAGCTAAAATTCTCCATACCTACAATACAAAGATAACATTCAACGATGTCCTACTATTGCTCAGTGCCAAAATATTTGCAAAAAGTCAAACTCAATAGTATAGTCTGTGTTTAGTGTCCTAGAACTAAAATATTCCCAGACTTGCAACACAAATTGGTGCCCAACACCACTTTGATACCGCTTAGCACCGTATTAGTTAACAACAAATAATTTTCTGATTTTAAGTGAACTTTGATATGATGAATTGCTCAAATTGGTACTTTTTTCTCACTGCATTGGTTCAAAACATTTTTAGACATGAAAACTTGTATCAATTTTTTAAATTGCTCAGATTCTAAATTCTCTCAGTCACACAAACCCAAGAACAAATCATGAACCAATAATGCAAACCATGCAAACTAAAACCACCATACTCACACAAATTAAATTCATAAAAACAACTGAAAGTCATACTCAACATAAAATCATCTATCAACATGCATTTGTCAATTTAGCAACAACATTATAAAGCAAGTCAAGACTAGCTTCTTTTATTTGATCATACAACTCACAAGACCCCAACCAACGAAACTCCTCAAGCTTCTAGATGCTCCATCTATATATAGAAACATCACAAGAATGTTTATGATATACCGTTAGGATTACTGATTAACAAATACTCATATAGATGACTAAAAAGATGCATGCAAATAGAATAATACTCATATGTAACAAATAACATAAAGATTAAACAAAAAACTAAAACTCAACTTAATGAAGAAACTAATAAGTCCAAATTGAAAAATTCATCGCTAGAATCACTCTTATAATTTTATTTTTTCAATCAAATGAGCAGAAAACAAAAATTCTTAGAAACAAGTCACAAAACTCTAAATAAATAATTTTTTAAAAAATATATATTTTTGAATAATAAAATTTGTTCGTAATAAAATTATTTATATTAAAAAAAATTAATATTAAAATAATTAAGTTGTTGTTTTTAAGTCACTATAAAATGATATTTTTAAATCTTTACAAAAATCATTAAATTATAATAATTTTGTAATTTATTACGCATTCAAACATATTTTATCACAGTAATAAATAATTATAATTAAGTATTTTATAAGATATTTAAGAATTCATTAATGATAAATATATAATAAATATTTAATATTGTCTGCATTGAAAAAGTAAACAGATATATGAATAAAAATAAAACCATACTTCAAAAAGGACAAGAAAGAAACTAAAAAATAAAATTCATGTAAGGTTTAATAAGTTAAGGATAAGGCCTCTTAAATTTACAAGTGAAACTCATCTTGTCTGGAGAGAGAATCGCTTAATTTTTCATTGGAAATTAAGAAAAAAAATGAAGTCTGATATTTGGATATGTAATATATTAAGCATTGAGAAAATGAATTTGAACGCTTGTAATGATTTTATAGAAAGTAAGATTATTGCTTTGTTGAAAAACATATCCATAATCTTAAAAAAATCTTAAAACTTAGGAACAATTCATCTGTATCTCATCTTTCTGATGTTATTACTGTCTTTCTCTGTCTTCTGTCTGTG

Gene Sequence:

>Vu_33657(+)

GCAATTAATAAATTCACACAGCACACAACACCTCCTCCCTCCCTCTTTCTTAACTTCTCCCTCCCTCTTTCTTAACTTCATCACTTCATTCCCCTTCCCTTCTCTCATCATCCTTACCAAGAAAGGTGATCAATGTATTTCCACCATTTCCGTTTCTTTTCCCACTTTTTCAACCATTCAAATTTTATTTTCTCCTAATTGCTTTCATCTAACACTTTATTGTATCTACTCTATCAACTTCTTTTGGAGAAAAAACCACCAATGCAGATGCAGGATCTGCATGTTCACTTTCTATGCCTTCACACACTTCAATTCAACTTAACTTAGACAATCATAAAGAAAAATAATTTTTTTCCTTTGTTTTTTTACTTTACTTTATGTCTTTGATTCCTAGTTCTGAACTGGCTAGCTTGCAGCAATTTCTGCTGTTATTGTAGATATTATTGTTATGAATTCTATAATAATGGGGTGATTTGGTCCTTGTTGAATTGTTCACTCAGTCATTTCTCGGTCTCCTATTGCGACATTTGCTGTTTTCTTTTGCTTGTTATTATGATAATAACGTAAGGTTTACTTGATTGTTCTCTCTCTGATTCTTGGTTGACGAGATCATGTCATACCTTTCTTTCGTCCTTTTCTGCTTTTCGTTATTCACTTTATCTCTTGTATTTCTCTGCCGAGGCAAACCAGAGTTTGTTTGTACTGCTTTTCCTGCTTTACTCTCTCTCTTTCTCTCTCTAAACTTTCGTTTACCAAGTTTTCTGTTCTACACCTGGTTGCAGAGGAGAAACCGGAAAAAGGCTTGGAAAAAATCAGAGTTTGTAACAACACGCTTTTGGTCATGGACAGTTATTACCATTCAGCTGTTGATCTCATTCGGGTTAGTTAATCAAGTATGTTTTGGCTAATTCTATACTCGTGTTTTTCCCATTTCTTCATTTTACTGTGAGATGTTCCTCATTGCTTTGAGGAAAATTGAATAAAATATCAAAAGGGTGTTTTAGTTTTCAATTGGAAATTCCATATATACTTGATCCTTAATTCTATAAAGATACAAATTTGGGAAAATGTAGAGATTTTGGTGCTTTAGTTACCCGTTTGAATTTTGAAGATAGATTAGAGAAGAAAGGACGCGTCTGGTGTGTTCACTGTCTTTGTTTACTTCAATTTCTCTCTATTTCACGGTTTCTTAATTTCAATCTCAATTTCGATGACTTCAATGTGAAATCCTGACGAAACACAAATGTCCGGACAGAATTTTAGTATATTCAATTACCTGTTCACATGTTAGGAGTTTTATATGCTTATTTGTTCGGTTATGTTATGTGATTCTTTCCTTCTTTCTGTTTTTTAATTCTTTACTGTAACAAGGGCTTGATTCTTTCAGATCATATATTAACTATAAAATTCATTTGTCTTCTTATGTTCAGCTGGTTTCACCATCCATTTGTTTAGCTTCCGGCAAGTTGTGCTTTTGACCAAGTACCAAAGACCTCGGTTTTCAACTTCAAGGTGTAGATTGTCCAACACTTCTACATGTTAGAGAATCTTTGGAGTCAGGATTGTTTACTCAATTGACTAAAGTTAGAATCTGAGTTTGATACGAGATCTATAGTGAAAAGGGAAAGAACTTGGCCTTATTTTCACCTGATGCCTTCATTCTGGAACTGAGCAAATGGGTTGCTGTGTCTCAACAAGTAGTCAGAGTGCTCGTAACAGCAGGAGCACTGGAGACACAAACGTTCAGACGTGTCTAGAAATAGGATTCTGTGGTCAAAAGAGTGCAAGGAGAACATTCTCTGACCATGTTATCTCTCTGCACCAGTTACCATCTTTACCCAACAGAATTTTCACCAATGGAAAGAGCAGGTCTTCTTGCATATTTACACAGCAGGGTCGTAAGGGGATTAATCAGGACGCCATGATTGTATGGGAAGTAAGTATGTTCATCTTGTAGTGTTGAGCTTGTATTATTCTCGTTGAATGAAGGAGGATCTAGTTAATTTAAGAAGTTGACACTCTTGGTTTGGCCCTTTTGTTTCTGTAGGATTTCATTTCAGAAGATGTGACCTTTTGTGGTGTCTTTGATGGCCACGGTCCACACGGTCACCTTGTTGCACGCAAAGTCCGGGAAGCCTTGCCACTAAAATTGCTTTCATTTTTGCATTCCTCGGAATCAGGGCAAAATGATTCAGGTAAAACTTGTTTCAGAGGCAGCATGAAGCCTGAAAGTGGAGAGTCTGAGAAAGATGTTGCTGCTGAAGATAAACTGAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAAAGAGCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTCACTGTAGTGAAACAGGTATATCAACTAGAAGTATCTATCCTCAAGTTCCTTTTTCATTTTGCACATCTTTTACTTTCCTCATTTTCCAGGGTTCAAATTTGTTCATGGGCAATATTGGGGATTCCCGAGCAATCATGGGATCCAAGGACATCAATGATGTCATGGTGGCAATTCAGTTGACCGTTGATTTGAAGCCTGATTTGCCAAGTGTGTTATATTATATACCTTGATCATTCATCCTATCTATTTCCAATCTGTGTTTTTGTTGAATGTAAACATTTTCAATTTTCTTGTAGGAGAAGCAGAAAGAATCAAACGATGCAAGGGTAGGGTATTTGCATTACAAGATGAGCCAGAAGTTCATAGGGTATGGTTACCTTTTGATGATGCACCAGGATTAGCAATGGCTCGAGCATTTGGAGATTTTTGCTTGAAGGAATACGGTGTGATTTCTATACCTGAATTTTCTCATCGGTTACTAACAGACAAAGATCAGTTCATTGTTCTTGCCTCAGATGGGGTAAGAATTTTCAATCTCATGTTCAGTTTTATTTCTTCATTATCTTTTCATAATATAAATAAAATTGTTTCAAGTGAAGTTAATCACAACTGAAAATATGTTGCAAGTTTGCAACTTTTTCAAATGGCATTGCTGTTCCTTGTTTAGGTCTGTGTGAAAGGCACCAGAACTGTTTAAACTATGTAAAACCTATTTTTTTTCTCTACACATACTGATTCTATCCTTGGTAAACAGGAAGAACATGTAGCTATTAAGATAATTAAACATCCAGCAGTGGCATTGTAAGTCTAATATAATAGAAGTGAACTGCATTGTGCAAGATATGGTGATAAAAAAGAGGCTTATAGTACCTTGTCACTTTTTATGAGGATACAATATGCATTGTTGAAGTGGAGTTTGCACAGTCCGCAAAATAGTCCATCCCACCATGTGTATACAATAACACTTTCACCACTGGACAAAATTGTACTGATTGCATTGTTGGATATTGTTAGAGCACTATATCATTGATTCCCTGCTTTCCTGTGTATATTGACTTTTCTACAATAGTTAACTTTAGAGCTTCTGGTTTTGCTTTATTTTGATGCTACTATCCACCTTAGAGAACTCAAATATTTTGCTGAGTCGTGAGACCTATATTTGATTGTTTTGTGTAGATCTGGGATGTTTTGAGCAACGAAGAGGTAGTTGAGATTGTATCTTCAGCACCAAGTCGATCATCAGCAGCAAGAATTCTGGTGGATTCGGCGGCTCGAGAGTGGAAACTTAAGTATCCTACTTCAAAAGTGGATGACTGTGCTGTTGTGTGCCTGTTTCTGGATGGAAAAATGGATTCAGAATCTGACTGTGAGGAGCAATGCTTCTCTTCTGCTATCATGCAGAGCAACCATTCAGGCAATCTGGTTGAGACAGATGATGGACAAAAGTATGAGCCAACTTTGCAAAGGAACTTTACAGTGAGATCCTCAGAAGAAAATGGGAGGTATGGAGGAAGAGGAGGAGTATCTGTTGATGTTGTTGAAGATGGAAACTCAGTGGTTCCATCAGGGCCTGAAGATCAAAACTGGTTAGGTTTGGAGGGTGTGAGCCGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCTGAGGAAAAGCCAAACTGTTGAGTTATTTTGGTTTGGTGGGTTTGTAATATACATGTTACTACTCATTGAATTCAACAAAGAAATTCTCTCTATGGTTAGTAAGAAAATTTGATGCTTAATTAAGGCCACCCAAAAAATTACTAAATATAAAAAATGAATGCCGGAGTACAGAAGCCAGCAAGGGTGGGTTGAAAGTGACATTCCTATTTTGTACACATGAAATCTGTGGAAATTTGAAGACCAGGGCTAAAAAAGTATGCTGTTATAGTTCATCCTTAGTTTATTTTTCAAACTCAAGCTTGGGTATGTTTAGAGGTTCATTCAAAACTTTTTACTTTTCTCCTATTTTTAAAAACTACTTCTCAATACTACTTCGGATATGTTGGAG