Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_33617	LG9	46793699	46795478	Cupredoxin	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	46793715	missense_variant	p.Ala6Asp
G/C	46793734	synonymous_variant	p.Gly12Gly
G/A	46793752	missense_variant	p.Met18Ile
C/T	46793813	missense_variant	p.Pro39Ser
T/C	46793907	upstream_gene_variant
C/A	46794096	missense_variant	p.Phe80Leu
T/C	46794403	missense_variant	p.Phe183Leu
C/G	46794489	upstream_gene_variant
G/A	46794535	upstream_gene_variant
T/C,*	46794541	upstream_gene_variant
C/A,*	46794555	upstream_gene_variant
G/C,*	46794556	upstream_gene_variant
C/A,*	46794557	upstream_gene_variant
G/T,*	46794559	upstream_gene_variant
G/T	46794560	upstream_gene_variant
C/A	46794576	upstream_gene_variant
C/T	46794577	upstream_gene_variant
C/A	46794580	upstream_gene_variant
C/A	46794583	upstream_gene_variant
A/G	46794588	upstream_gene_variant
C/T	46794663	upstream_gene_variant
C/A	46794686	upstream_gene_variant
T/A	46794736	upstream_gene_variant
A/C	46794836	upstream_gene_variant
A/G	46794840	upstream_gene_variant
C/T	46794852	upstream_gene_variant
C/T	46794895	upstream_gene_variant
A/G	46794897	upstream_gene_variant
G/A	46794899	upstream_gene_variant
C/T	46795048	upstream_gene_variant
G/A	46795063	upstream_gene_variant
A/G	46795227	upstream_gene_variant
T/G	46795294	upstream_gene_variant
A/G	46795448	synonymous_variant	p.Thr220Thr
G/A	46795454	synonymous_variant	p.Lys222Lys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_33617.1

MAMGYANNGFLGLFLFFMSISILFSSPTACTLFEVRWVPNPSEDYTHWAQRNRFQVNDTLLFKYKSWSDSVLVVKKEDYYSCNTNNAMQEMDGGDSMFTFVKSGPFFFISGNAQNCQRGQKLTAIVLAVRHNKLTHSLSPAPTPSPTEAAENGPYPSSDISPSGPTSSAPYPPKHSGATSFRSSVGVGLGVVSIGDSRTEEYEETEPAEALENGSAIEEGTMKTRNWSWK*

CDS Sequence:
>Vu_33617.1

Promoter Sequence:
>Vu_33617::LG9:46791699-46793699(+)

ACATTAATTTTGTTTCTTGTTGAGTATTACGATAAGGGGAAAAATTGCAAAAAGTATAATTGGCCTAACTTTCTAACTAACCTAGGTTGGGATATTCTTCACTTCAAAGCTTGATTTAAGTGTTGTCATTAATATTCATCATTCCAAACGAAACAAACAATATGGCAGGTAATTCGATTGTTTGTATGTCCTTGTCTGATGGAATTAAGAAGAGAATGAATATATAATTTGATATATTTCTTTTCATCTGGAAATTCGTAGAACTATAACTTTCTTTCATTTGTTTTGTGAATGTGTGAATGGTTTTTCTACCTTTTATTAATAAATTGTTTTCCAATTAACGACTCTATCATCCTCTTTAACTTTATCGTAACTTTTGTTAACATTATATATATTTTTAGATTTTGGAATTGGTTTTGTAATGTGTAGAAATTAGTCTATTCTTGTAATGCCTTTTTTTTTTAAACAAAATGCTTCACTTAGTTTTTTTTGTCAAAATTAGTTGTAGATTAAAGTACATATGTTTGTTTACCGAAAGATATATATGGAGAATTTTCGTTAAAGAGATAAGTTTGTTTGTTTTTTTGTTTTTTTTTTTGTATATTTTTATTATGTATATGGGTTTCAACAACCTATTACTTTATTTAATTATATTTAATCTTCCAGACAAAATGAAAATAATCTAAATGAATTCAAGCTTCCTATCATTGCCTAACAAACCCAACGTTCACTGTTCATGGGAATAATTGTTAAAAAACAAACAATTATGAGCTCAGTGGAGATAAATCAAATAAATATATAATGTGAGGATATATCATATTAAAGTATATAAAATGATTTCGTCAAGATTAAAAATAAAAGTTGTATACTTTGATAAAACTATAATCAAAACAAAATATACAAGTTAAAAGTAAAATATAATATATTTATGATAACAAAAATAGTTATTAAAGCAGTTGTAACATATTTACAAAAATGGAAAAAAAAAAATTTATGACTCAATTGTTGGTTATGATAATAAATAATATAACTTAGTTAATTATTTGTTTTTTCTATATGGTATATAATTATTTGTTTTGTTTCTTTCTTATAATGTATGTTCTTTTGTATTTATCATTCTTTTTAGGAGAATGGTTAGTATTATCATTACTTTTATTATAACTTTTTTTGTCATACCATCATTTGCACAATAAATTGTCATCATACAACTTTTTCTGCTATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGTCACTATATATATCCATATTAACAAATCAAGAAAGATAGTGGCAAACTATAATGACTGATCTATGCTGGAGTCAAAGGTAACCATGACCCTCATAATGTTTTTTAAATTATATATATACCTAATTTGTTTTGAAATATTTAGATTAATTTTGACACTATTATCTTTATTTTCAAGTTGAGTCGCCAATAACATATATATCAGTATTTTATTATAGTGTCATGATTATTATTAATGTTGTCATAATAATTACCACTTATATTAATGTTGTTATCACTCTCATATCTATTTACCATCTTATTTCAACTATTATGGTTATCATCACTTATCTCACTATTATGGTTAGCAACATTTTCTATTATATCCTTTTATTATGTTAATCGTTGTTACTATTATAATTATGAATGTGGCTACCCATCTTATTATTATTTAATATTTATCATGATATACATTGAATATTGAATATAATTAATTTTATTTTTAACTTATCTTATTTTTATCCTATACTAGTGTACGTAAATCCATCTGATATGTTAAATAATCCTTAAGATTTTATTTGAATGCTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTATATATTCATAACGATCACATGATTAAATATCCCTTATATGCAAACCTTTCATTCCATTCCTCAGATTAATTTCTTCTGCTACAAAGAACATCTCAAACA

Gene Sequence:

>Vu_33617(+)

ATGGCAATGGGGTACGCTAATAACGGTTTTCTTGGGCTTTTTCTCTTCTTCATGTCTATCTCCATTCTATTTTCTTCACCAACAGCATGCACATTATTTGAAGTTCGTTGGGTCCCCAACCCTTCAGAAGATTACACTCACTGGGCTCAGAGAAACAGGTTTCAAGTCAACGACACTCTTTGTAAGTCAAACTTACTTCTCTTTTCAATCCTAAAACACTACACAAATTATATGTACAACGTTATATAAAAATAATGGAATTTACCGGTGTTTTTTATATTTTATTTTTTACATTTTTTTATCTTAATTTTTTCTTTTTGGTGGTGGTGACATGCAGTGTTTAAGTATAAAAGTTGGTCTGATTCAGTGTTGGTGGTAAAGAAGGAGGATTACTATTCATGCAACACTAACAACGCCATGCAAGAGATGGACGGTGGTGATTCAATGTTTACTTTTGTGAAATCGGGTCCTTTTTTCTTCATCAGTGGCAACGCTCAAAACTGCCAACGTGGTCAGAAGCTAACCGCCATCGTTTTGGCCGTCAGACATAACAAACTCACTCACTCGCTTTCTCCGGCACCAACACCATCTCCGACGGAAGCTGCAGAAAATGGGCCATATCCAAGCTCTGATATTAGCCCATCAGGCCCAACGTCTTCGGCGCCGTATCCGCCCAAACATTCGGGCGCCACGAGTTTTAGGAGTTCGGTTGGTGTCGGTCTGGGTGTTGTTAGCATTGGGGTGGGCTTGTTCTTCAGCATCTTGGGCTAGTTTGCTTGTTAATGGGCCTCAATTTGTTTGGGGTTTTGAACTTTGTTGACTATATATTTTTGGGTGTTGCTTCCTCCACCACCACCGCTGGCTCCCTCCACCTCCCCCTTCCTCTTTTACCCCTCACTCTATCTCTCTATTCCTACTTTATCCTTCACTAAAATTTTACTTTTAGGATTAATATTTTATAATTCTTACCCACTCTAATCCTCTACGCACATGTAGCGACACACCTCTTCATCCTCTTTTACGTTATACTTTCGTGCTCTCATTGTTACTTTTTTATTGTGTGAATTCTTTCTCCTTTCTTTGTGGTACGAGAGTGTGGTGAGTGAGAGGTTGCAGGTGGTGGTGGAAGAAAGTGTTATACAGTGACAAAGTTCAGTCTCAGTGGTGTTTGAAAGTGCAAAGGGGGTGAAGATGCACTACGTCGACGTACGTAATCAATCCTAAATTAACGTGAAAACCCTTAAACGGATATGAACATCCGTCAACGGATGTCAACATCCGTTTAAGGTGAAACGGATATCGACATCCGTTTAAGGTGAAACGGATATCGACATCCGTTTAAGGTGAAACGGATATCGACATCCGTTTAAGGTGAAACGGATATCGACATTCGTTTAAGGTGAAAAGGATGTGGACTTCCGTTTTGGTTCCTCAGTCATTACAATGTTTAAGGTGGGTCACTCCGTATTTAATGAACCTCACTCAATATTTTATAGTTTTCAATAAAGTTTTCCTAATATAGGATAAAACGTTGCTAGCACTCCTCATATATCTCATTTTTTTATTATTATTTGTACTTAATAGCATATCAATATTCATATCTTTCCCCACAGGTGATTAAAATGTTCTCTTCCTCATTTTCTCTTTTTGGTTGGTTTGTTTGCTTAAATAGGACTCTAGGACCGAGGAATATGAAGAAACAGAACCTGCTGAGGCATTGGAAAATGGTTCAGCTATTGAAGAAGGGACAATGAAGACCAGGAACTGGAGCTGGAAATAG