Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28221 LG7 48119923 48121620 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 48119923 stop_lost&splice_region_variant p.Ter242Cysext*?
G/A 48119954 missense_variant p.Ala232Val
T/*,C 48119964 missense_variant p.Lys229Glu
G/C 48119967 missense_variant p.Leu228Val
C/G 48119991 missense_variant p.Val220Leu
G/A 48119996 missense_variant p.Thr218Ile
C/G 48120001 missense_variant p.Trp216Cys
C/T 48120002 stop_gained p.Trp216*
T/C 48120035 missense_variant p.Glu205Gly
C/T 48120051 missense_variant p.Glu200Lys
C/A 48120074 missense_variant p.Ser192Ile
A/G 48120095 missense_variant p.Ile185Thr
T/A 48120111 upstream_gene_variant
G/A 48120144 upstream_gene_variant
G/T 48120160 upstream_gene_variant
C/T 48120195 upstream_gene_variant
A/C 48120202 upstream_gene_variant
G/A 48120205 upstream_gene_variant
G/A 48120206 upstream_gene_variant
T/A 48120218 upstream_gene_variant
A/T 48120226 upstream_gene_variant
A/G 48120232 upstream_gene_variant
G/C 48120280 upstream_gene_variant
G/A 48120282 upstream_gene_variant
G/C 48120285 upstream_gene_variant
A/T 48120301 upstream_gene_variant
G/A 48120307 upstream_gene_variant
G/A 48120325 upstream_gene_variant
T/A 48120327 upstream_gene_variant
C/T 48120330 upstream_gene_variant
T/C 48120331 upstream_gene_variant
A/C 48120371 upstream_gene_variant
T/C 48120378 upstream_gene_variant
T/C 48120463 upstream_gene_variant
T/C 48120472 upstream_gene_variant
G/C 48120503 upstream_gene_variant
A/T 48120531 upstream_gene_variant
C/T 48120552 upstream_gene_variant
G/A 48120555 upstream_gene_variant
G/A 48120557 upstream_gene_variant
G/C 48120572 upstream_gene_variant
A/C 48120616 upstream_gene_variant
T/A 48120637 upstream_gene_variant
A/G 48120648 upstream_gene_variant
A/T 48120652 upstream_gene_variant
A/T 48120658 upstream_gene_variant
C/T 48120670 upstream_gene_variant
A/T 48120684 upstream_gene_variant
T/C 48120687 upstream_gene_variant
C/G 48120696 upstream_gene_variant
C/A 48120704 upstream_gene_variant
G/A 48120727 missense_variant&splice_region_variant p.Pro183Leu
A/T 48120736 missense_variant p.Phe180Tyr
C/T 48120740 missense_variant p.Ala179Thr
T/C 48120746 missense_variant p.Lys177Glu
G/T 48120747 stop_gained p.Cys176*
C/T 48120755 missense_variant p.Ala174Thr
C/T 48120768 synonymous_variant p.Gln169Gln
G/A 48120770 stop_gained p.Gln169*
T/C 48120797 splice_region_variant&intron_variant
G/A 48120798 splice_region_variant&intron_variant
T/C 48120829 upstream_gene_variant
G/A 48120840 upstream_gene_variant
A/G 48120863 upstream_gene_variant
G/T 48120881 missense_variant p.Leu160Ile
C/A 48120920 missense_variant p.Gly147Trp
G/A 48120937 missense_variant p.Ser141Leu
T/A 48120966 missense_variant p.Lys131Asn
A/G,* 48120989 missense_variant p.Ser124Pro
C/T 48120993 synonymous_variant p.Ser122Ser
C/G 48121048 missense_variant p.Ser104Thr
A/T 48121056 synonymous_variant p.Gly101Gly
C/T 48121058 missense_variant p.Gly101Ser
C/A 48121091 splice_region_variant&intron_variant
G/A 48121096 upstream_gene_variant
C/T 48121100 upstream_gene_variant
C/T 48121106 upstream_gene_variant
T/G 48121113 upstream_gene_variant
C/T 48121119 upstream_gene_variant
C/A 48121120 upstream_gene_variant
T/C 48121124 upstream_gene_variant
C/T,* 48121131 upstream_gene_variant
T/A 48121133 upstream_gene_variant
T/C 48121135 upstream_gene_variant
A/G 48121140 upstream_gene_variant
A/G 48121149 upstream_gene_variant
T/C,* 48121220 missense_variant p.Thr83Ala
C/T 48121235 missense_variant p.Val78Met
G/A 48121242 synonymous_variant p.Cys75Cys
G/A 48121253 stop_gained p.Arg72*
G/A 48121258 missense_variant p.Ala70Val
C/T 48121281 splice_acceptor_variant&intron_variant
A/G 48121284 splice_region_variant&intron_variant
G/A 48121287 splice_region_variant&intron_variant
A/T 48121306 upstream_gene_variant
G/A 48121312 upstream_gene_variant
G/C 48121320 upstream_gene_variant
C/T 48121322 upstream_gene_variant
C/T 48121328 upstream_gene_variant
C/T 48121333 upstream_gene_variant
T/A 48121334 upstream_gene_variant
C/T 48121343 splice_donor_variant&intron_variant
C/T 48121344 missense_variant&splice_region_variant p.Gly63Ser
A/G,T 48121345 splice_region_variant&synonymous_variant p.Gly62Gly
C/T 48121346 missense_variant&splice_region_variant p.Gly62Asp
T/C 48121353 missense_variant p.Thr60Ala
G/A 48121354 synonymous_variant p.Asp59Asp
C/T 48121356 missense_variant p.Asp59Asn
G/A 48121364 missense_variant p.Ala56Val
C/T 48121379 missense_variant p.Arg51Gln
G/A 48121380 missense_variant p.Arg51Trp
C/T 48121400 missense_variant p.Arg44His
A/T 48121408 synonymous_variant p.Gly41Gly
C/T 48121413 missense_variant p.Val40Ile
T/C 48121418 splice_acceptor_variant&intron_variant
C/T 48121423 splice_region_variant&intron_variant
C/T 48121427 upstream_gene_variant
G/A 48121429 upstream_gene_variant
T/G 48121442 upstream_gene_variant
C/T 48121456 upstream_gene_variant
G/A 48121458 upstream_gene_variant
G/A 48121463 upstream_gene_variant
G/A 48121471 upstream_gene_variant
G/A 48121475 upstream_gene_variant
A/G 48121477 upstream_gene_variant
C/A 48121485 upstream_gene_variant
G/A 48121489 upstream_gene_variant
C/G 48121502 splice_region_variant&intron_variant
C/T 48121507 splice_region_variant&synonymous_variant p.Ala38Ala
C/T 48121509 missense_variant&splice_region_variant p.Ala38Thr
T/C 48121539 missense_variant p.Arg28Gly
T/C 48121571 missense_variant p.Asp17Gly
A/G 48121582 synonymous_variant p.Ile13Ile
A/G 48121607 missense_variant p.Val5Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28221.1
MVANVEVGSLVAITLEDGDSWKLAFALRVVAVSRFDTAFVGLKREVVALRRFEVVAVADTDGGVGVVGGWRVEGVAVKWCWLIRSAQLPQQKNKKMGESNVGSESVGAGGGRPRLVLQPRSLSVSNKGGDGKVGKPKGLVHSEKRGQGSKPDGIASRIVFLDELPLYELLRSDCRQLAKQLSCHQDIASDGCFSLGMLARMEPTLREKNVWMYPRLFWETGVLGQVLYLLKAHAIGISATGIG*


CDS Sequence:
>Vu_28221.1
ATGGTTGCTAACGTGGAGGTGGGTTCGTTGGTGGCTATTACTTTGGAGGATGGTGACTCGTGGAAGTTGGCGTTTGCGTTAAGGGTGGTGGCGGTCAGTCGGTTCGACACTGCGTTCGTTGGTTTGAAGCGTGAGGTTGTCGCCCTAAGGCGGTTTGAAGTGGTTGCTGTTGCAGACACTGACGGTGGGGTAGGGGTTGTTGGGGGTTGGCGTGTCGAGGGCGTTGCAGTGAAGTGGTGTTGGCTGATACGTAGTGCTCAATTGCCACAACAAAAGAACAAGAAGATGGGCGAATCCAACGTTGGTAGTGAGAGTGTTGGTGCTGGTGGAGGGAGACCAAGGCTTGTTCTGCAACCTCGGTCTCTGTCGGTGTCCAATAAAGGGGGGGATGGGAAAGTGGGGAAACCTAAGGGGTTAGTCCATTCGGAGAAGCGAGGCCAAGGGAGCAAACCTGATGGGATTGCCTCAAGGATTGTATTTCTTGATGAGCTTCCACTGTATGAACTGCTCAGATCTGATTGTCGGCAGCTTGCAAAGCAGCTTTCGTGCCACCAGGACATTGCAAGTGATGGTTGCTTCAGCCTTGGTATGTTGGCCCGTATGGAACCTACTTTGCGTGAAAAGAATGTCTGGATGTATCCACGATTATTTTGGGAAACTGGAGTCCTTGGACAGGTGTTGTACCTTCTTAAAGCACATGCTATTGGAATCTCAGCAACCGGAATTGGTTGA


Promoter Sequence:
>Vu_28221::LG7:48121620-48123620(-)
CTTGTGTTCACAAATGAAAGCATCATATTTTCTTTAGTTTGAATACTGAAAGTTTTCAACACAATCAATGTGGTTTCACTCGTATATTTCTTAGATTTATTTTTAGTCATATGTACTAACTTTTATGAATTTTGAATATAATATTGCAAAATATTTTGATTTGAACGTTGAGACTGCTCCGCAAGTCTCGTGCTTCTAGTGTAAGTGTTGTTGTCAATGTTCGTTTTTAGTTTGCAACTTTCTTATTTATTAAAAAATCTTTTTCTCAAAAGATATTTTGACATATATTTTGGATCTTTTGGATCATGGTTGATAATGCTAATTCTTATCATTATATAAGCATCAATTTAGTAGTAAAATCAACTATTTTTTAGCTTGTAACATGCTTAATCCTCTCTTTTATCTCAGTTTTATGAATAATTGTGTTTTGGGCTACTTTGATCTAATTTCATCTTTAATCCCTTTATTTTGTAGCTAATATTGTGCTTGGAAGAACCTCTATCAATGTAGAGAGCTGAATCAGCCACAAAAGTAAGCAAAGCTACACAATAATGAGAAAAAGAAGCAGTGCAGCAAGGTCAAGCCCGAGCGTCAGTGCACCACGACTGACGCACGCTTGGGCACCCCTCCTTCTAGGCGCTTGAGTGCCAACTTTGCTGACACGGCAGATTTGCCCTATTTAACTCAGAAACGTGAAGAGCTTTGGATCTTTGGGCACCCAAATGCGATTTTTCTCTACTTGAGCACTTGGAGGTAGGAGCTACGGGAACAATCCTTCTTCTTCCTTGGGTTCTCTCTCTCTCCCTTCTTCAATTTTCACCATTTTTGTAAGCTTAAGCTCTCCATTCATGGAGAGCTAGTTTCATTTATTATTGGGGATTGATGTAACCACGGATCTCTTATGTAAACTACAGTGCTTTGAATGATTATATGCCTCTTTCATTGATTGTTAGTGTTTACTTCCCTTAAAGCTTGTTATGATTTGATCAACCATGACATGATTTTAGGATTTTCTTAATATTGAGAAATATTATGTGAATCTGGAACTGGATTAAACACCTAAAGGAAATTGTGTCTAGGAATAGAATTAGGACCTTTGGTTGTCGTTAATCTCAATTCTTAATGCGGAAATAATTGTTAGGTTTTCCAAGGGATTGGAATCTAATAAGGAAGTCTAGGCTCTCTCTATCGAGGGATTGAGTTTGAGTAAATTTGTAGATTGACATTGGTATTTTAATGAAGAGGAAGTGAATTATCATGCATAAGAGTGAAGTAGGTGAAATCATACCCCCAACAATACCATTCCATATCATTTCTAATCTTTTCATTCTTAAGTGTTTGAGTTACCAAAGTTCATTTTTACTGTTCGTCTTATATTTACCTTAATTGCATTAAAACTCAAATTATGGAATCATTCCTTAGTCTAAGTTAATTACAAATTATACGATTAATTGGTGACACGAGTCTCTTGGGAAACGATATTCGGTCTTTCCGGTTTATTATTTGAAACGATTTGGTACACTTGTCAAAGACTCAACAATGGACTTGGTTCACCAGTTCTATAAATAGAACACTTCACTCACTCTAAAATCATCATCAGAAATCACTCTTCTCTCATTTTCTCTTCTCTTAGTATCATTCTTTCTTTTTTCTTATTTTCCTAAAAATATTTTGGGTTTATTTTATTCTCTTTTTAGAAATCCTTGCTAGTTCTGAGATTCTCATAAATTCTCACTACAAGAAAGAGCGTAATTACCGACGGGAATTTCCCAACGGCCTTTAGGCCTTTTGTAAAGTGTTGGTCACATAATATACCGAAGGCATGTAGGCCTTCGGTAATGTCAATGATTAGAAATTTGGTTTTTTTGTCCTGAATTCCCCAATTTCAGAATTCCCTCGTCTCCCCTTCCCTCTTCTCTTCAATTTCAGAAATCCCTCTCTCCCCTTCCCTGGTCTGTTCGTCATTACCGTAAGTCGAATTTGGTCACCCTAAGCCATTG


Gene Sequence:
>Vu_28221(-)
ATGGTTGCTAACGTGGAGGTGGGTTCGTTGGTGGCTATTACTTTGGAGGATGGTGACTCGTGGAAGTTGGCGTTTGCGTTAAGGGTGGTGGCGGTCAGTCGGTTCGACACTGCGGTTTGACGGTGCGAGTTCAGTGGTGTGGATGCTGACGGAGGTTCGTTGCTGGGTGGCGCTCTTCAATTCCCTACTCTCTGTTCGAAGCAGTTCGTTGGTTTGAAGCGTGAGGTTGTCGCCCTAAGGCGGTTTGAAGTGGTTGCTGTTGCAGACACTGACGGTGGTTCGTTGGAGGCTGGTTTGCGGCTAGGGTTCGTGTTTTGGTCCTTGTGAGTGTTGCGATAGGGGTAGGGGTTGTTGGGGGTTGGCGTGTCGAGGGCGTTGCAGTGAAGTGGTGTTGGCTGATACGTAGTGCTCAATTGCCACAACAAAAGGTCGTGTTGACTGAAATTAACTAGATGTTATCCAACGTTGGACTGAAATTGATTGAAAGAGGAAGGTTATTGGGTTTGGATCCAGCGATGCTGATTCAAATGACTAGAACAAGAAGATGGGCGAATCCAACGTTGGTAGTGAGAGTGTTGGTGCTGGTGGAGGGAGACCAAGGCTTGTTCTGCAACCTCGGTCTCTGTCGGTGTCCAATAAAGGGGGGGATGGGAAAGTGGGGAAACCTAAGGGGTTAGTCCATTCGGAGAAGCGAGGCCAAGGGAGCAAACCTGATGGGATTGCCTCAAGGATTGTATTTCTTGGTGAGGAATAAAAATCACTTTGATGAATTGAAGAAAGCTATGCTACCTAACTTTTTGTGGACCAAACCTGAGGGTTTCCCAGATGAGCTTCCACTGTATGAACTGCTCAGATCTGATTGTCGGCAGCTTGCAAAGCAGCTTTCGTGCCACCAGGTATGTGGCAATTGGTGATTGCCTACATGTCTTTTGAATTTTGCATTGGTTTATGGAGTTTCTTAATGTCTGTGAATTATGTTGTACATGATCAAATAGTTTTCTAGTTAGATTGTGAAATGAAACACAGTCAGTGAGGAGATGAGAGATGTCTTTATTAGGATGAACGCCAGGGTTTATGCTACTATTTTTATTAGATAACTGTGTTAAATTTGGATTTTCCTTTGAAGCAGGAATTATTATTTAAACACAATTTATTTGATTTGTATAAAGTAATAATATATCCATGCGCTTCACAATTATCACATACTGTCTGGTACTTTTGTCTCTACTGAATAAGTGAACAAAATGTTTTTTATTCCTAATAGCATCATAGTATAGATTTGTGTATCTAGGTATCAAAGCTTTGACTTATTTCTGTGCTTTATTATCTTAACATCTACTCGTTGAGTTACAAAATTAGTTTAGCTTTTGATTGATTCTATATATTGATAAGTCTAATGTACAATGATATTATACCATTAATTGTGTAACACTAATATCAGTCTTATTTCTAATTAGAATCTGAACTGATACTCCACGAATATTGTATATCCTGTTTTACAAGTGTATCACGTTCTTGAAGGACATTGCAAGTGATGGTTGCTTCAGCCTTGGTATGTTGGCCCGTATGGAACCTACTTTGCGTGAAAAGAATGTCTGGATGTATCCACGATTATTTTGGGAAACTGGAGTCCTTGGACAGGTGTTGTACCTTCTTAAAGCACATGCTATTGGAATCTCAGCAACCGGAATTGGTTGA