Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10139 LG2 41389270 41390027 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 41389291 stop_retained_variant p.Ter97Ter
C/A 41389314 missense_variant p.Glu89Asp
G/A 41389318 missense_variant p.Ser88Leu
G/A 41389333 missense_variant p.Thr83Ile
G/A 41389335 synonymous_variant p.Ala82Ala
C/T 41389345 missense_variant p.Ser79Asn
A/G 41389362 upstream_gene_variant
T/C 41389380 upstream_gene_variant
T/C 41389383 upstream_gene_variant
C/T 41389393 upstream_gene_variant
G/T 41389401 upstream_gene_variant
C/T 41389409 upstream_gene_variant
G/A 41389410 upstream_gene_variant
G/T 41389454 synonymous_variant p.Arg73Arg
G/A 41389464 synonymous_variant p.Ala69Ala
C/T 41389507 missense_variant p.Ser55Asn
C/T 41389520 missense_variant p.Asp51Asn
A/T 41389611 upstream_gene_variant
C/T 41389619 upstream_gene_variant
A/G 41389638 upstream_gene_variant
C/T 41389644 upstream_gene_variant
C/T 41389657 upstream_gene_variant
G/A 41389696 upstream_gene_variant
C/A 41389715 upstream_gene_variant
T/A 41389747 upstream_gene_variant
C/A 41389755 upstream_gene_variant
T/G 41389771 upstream_gene_variant
G/C 41389784 upstream_gene_variant
A/C 41389833 upstream_gene_variant
A/G 41389838 upstream_gene_variant
G/T 41389850 upstream_gene_variant
G/A 41389851 upstream_gene_variant
G/T 41389861 upstream_gene_variant
C/T 41389865 upstream_gene_variant
A/G 41389869 upstream_gene_variant
A/G 41389882 upstream_gene_variant
T/C 41389902 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10139.1
MAVRACDGAAMAEILFSWSDAAAVAWWRLAAEHLDGVVEASPVNVAPISAGLQPQPLGEVVGVQQDLLRRILTEGAALEFGCHWFVIIRGFGSENALMEFGCH*


CDS Sequence:
>Vu_10139.1
ATGGCAGTGAGAGCGTGCGACGGTGCTGCGATGGCGGAAATTCTTTTCTCATGGAGCGACGCGGCGGCGGTGGCATGGTGGCGATTAGCCGCGGAGCATCTTGATGGAGTGGTTGAAGCGTCCCCGGTAAACGTTGCTCCAATCTCCGCCGGACTTCAACCTCAGCCGCTCGGAGAAGTTGTCGGTGTCCAACAGGATCTCCTCCGCCGTATACTCACGGAAGGTGCAGCGTTGGAGTTTGGGTGCCACTGGTTCGTGATAATCAGAGGATTTGGTAGTGAGAACGCGCTAATGGAGTTTGGGTGCCACTAG


Promoter Sequence:
>Vu_10139::LG2:41390027-41392027(-)
TTTATAATTCTATTATTTTATTTTTAATTTAATAAACATCTTTGTTATTGTGAAGATCTAGGAAATGATATTTTAGGAGTGGTAGTGAGTTAAAAATAATGAAACTCTATTATTTTAATATTTAAAAGGTTTTAATATAAAAAGAATTGTTATAAACGAGTTTCATTATTTTAAAACACACAATCTCTCTACGAACCACTTTTTTAGAGTCTTTTGTCTTTTCTCTAAGGGTTCTTACACCTTGTTCATTTGTTTGAAGATCGGAGACCGCCTATGTAATAATTGTAGTGAGATCTTCAAATCTAACTGATCAGTTTTGATAATATGATATGGTATGATTTAATGAATTAAAAGAGTATGCTTGTTGAATTTATGTTGTATCATGGTATGTTTGTGTGAATTTGGTTAGGAAACGCTTTGTATGATGCTAAAAGAGCTTGATGAAGTTGATTGTTGAATGTGTCTATTTTGATTGTTTGAAATGGTGAAGTTGATGTCCTAGTTGGTTAGAGAATTTTTGTTGAACCTTGAGGTAGGGAAAGAGGAGAGTCTTTGCATGTTTTTGAGTCTTAAATTGGGGGTTTTGATAGTGAGTTGTTAATTAAAGGGTTGATTAATAAGTGAATTTTAAGTCTAAGTCAACCCCACAAAACTGGCTTGTAAGGTGAGGTTTGAATCCACATATATACTATAAATTGACCTTATCTCTAATCAATGTAAGACTTCAATAGTATGCAATGTTGTAAGGAATGTTGTGAAAGATTTGTGAATTTGATTATTATATGAAATTAAAATAAAGTTATGAATATAATTATGTATGAGATGTGATGGTGATCAAATAATATTTGAGGTGTGAATTTCAAGTATCATGTGAGAAAGGAATTCAAATGAGGAATATCCTAAGTTGGTTATGTTGTGTTATGTATTGAAGTAGGGGCTCCGGGACTAGAGAATGATCTTGACACTCTTATTAACCCCATCTCATGTAGAGATAAGTGATTATGTCATGGAGAGTAGTAGGAGGTCTTATTCTATGGTAACTAATTTTGGTTATAGATGTTTGACAAATTAACCTTAGTGTATGAAATTATTGGTGGTGATTGAGGATGTGGTTATTATTATTTCTGAGCAGGTTGTTCCATCATACACGGGTGCAGGTTCCCCATGAGTCCAACATCAATGCATCTATCCGGATAATTTAGAATTTTGAAGATCGATGAGAATTATGTTATGTGTTGTTTGATTTATAATATGGATGTGTATTATTATTGTTTTAAAAAATGTATGTATGTCTTTTGGTATTTTAGCTTACTCTTGCTTTTGTGTATGTTTTTTCTTTTGCGATTATCACCTTAATGGTGTGAGCTTAGAGAGAGATGCTCTTTACTGTTACTCCAGCGAGAAGTGAGAGTGAAACAATTGGAAAGTCAGATGATTCTACAAGTAGATCTTGTCCATTCGTAAATTTATTTTCTTATAATAATTTTATTATCCTATAATGTAATATTTCATTTTAGTAGTATTTTAGCGATTTAGAATCATTCTTTATATAATGTTTATAAACACTTTTGGATTTTAGTGAAAATATATTTTATGAACTATTTTCTTTTAAATCTTAACAAAATAAAAACTTTCATAACATATGTAAAAAAAACAAAATTATACGTAAAAAAATCACATTTTTAACTCGCACATTACGCTTCGATGTTTTTGGAACCGAAGCGTATCAAAACGCGGTGGCAGTCTCGTAATTTTTAAAATAGTATATACCTCAGTTGTTAAGCAACCGATGTCTAAAAAGAATATTGCCTTGGTTGGCAGGGTGAACCAAGGCATAAACCTCACGTGGCAAAGATACTGCCTCGGTTGGCAGATGGACCGAGGCATATGGGCTTGGACTGGACCTTAAAAAAGCAATCAAGAAAACCTAGCATCTACGATGAAATTTTTCCCCAAAAACCTAGCACCTCTCCTCTTCTCCTTTTTCTCTACGATGTGCG


Gene Sequence:
>Vu_10139(-)
ATGGCAGTGAGAGCGTGCGACGGTGCTGCGATGGCGGAAATTCTTTTCTCATGGAGCGACGCGGCGGCGGTGGCATGGTGGCGATTAGCCGCGTCTCTACGCACTCTCGCGAGCCAGTTTCTCTCAAGAGAGTGCATCTCCTCATTGCCAACCTCCATTACAGATCCACCTCTCCTCCGCACTGTAAGTTTAGTTTCCTTCACAGATCCAACATTCTTCTTCCATATTTTGCCTTTCTTCAGCCTTAGCGACCATAAAACCACTTTTCTACCGATTAAACATGTTTCCCTCTGTTCATTCCTCTTTTCCACCGTTTAAAACCTTGGTTCCACCGATTAATCGGTCAAGATAGTGTCTCTGCAGGTGGATAGCGAAATGGATTTGGGGTTTTGCTTCTTAGGTTGCCCTGCGGCTTCTGATTGCTCGTTGGGAAAGAAGAGAAAGAAAGGGAGCATCTTGATGGAGTGGTTGAAGCGTCCCCGGTAAACGTTGCTCCAATCTCCGCCGGACTTCAACCTCAGCCGCTCGGAGAAGTTGTCGGTGTCCAACAGGATCTCCTCCGCCGTATACTCACGGAAGGTGCAGCGTGTCCATATTTGAAGCCTATTGGAGAGCTCCGATTGCACCTCCGTCAGGGGCTTCTGATTAGGGTTGAAAATTTGGGTTGTTAATGCAGGTTGGAGTTTGGGTGCCACTGGTTCGTGATAATCAGAGGATTTGGTAGTGAGAACGCGCTAATGGAGTTTGGGTGCCACTAG