Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10007 LG2 39323050 39325079 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 39323072 missense_variant p.Ser8Phe
C/T 39323089 missense_variant p.Leu14Phe
G/T 39323100 synonymous_variant p.Ala17Ala
A/G 39323101 missense_variant p.Thr18Ala
G/A 39323124 synonymous_variant p.Leu25Leu
T/G 39323212 missense_variant p.Cys55Gly
C/T 39323219 missense_variant p.Ala57Val
A/G 39323241 upstream_gene_variant
C/T 39323268 upstream_gene_variant
G/A 39323320 upstream_gene_variant
C/A 39323332 upstream_gene_variant
A/G 39323355 upstream_gene_variant
A/G 39323386 upstream_gene_variant
A/G 39323391 upstream_gene_variant
A/G 39323392 upstream_gene_variant
G/A 39323394 upstream_gene_variant
G/A 39323395 upstream_gene_variant
G/A 39323472 intron_variant
A/G 39323473 intron_variant
T/G 39323486 intron_variant
C/A,T 39323492 intron_variant
G/A 39323494 intron_variant
G/A 39323499 intron_variant
G/A 39323502 intron_variant
G/A 39323507 intron_variant
G/A 39323509 intron_variant
C/T 39323520 intron_variant
C/A 39323523 intron_variant
C/T 39323526 intron_variant
A/G 39323528 intron_variant
C/T 39323529 intron_variant
A/G 39323542 intron_variant
G/A 39323549 intron_variant
A/G 39323556 intron_variant
C/T 39323567 intron_variant
A/G 39323569 intron_variant
T/G 39323575 intron_variant
A/G 39323579 intron_variant
A/G 39323654 intron_variant
T/C 39323707 intron_variant
A/G 39323764 intron_variant
T/A 39323778 intron_variant
G/A 39323836 intron_variant
C/A 39323837 intron_variant
A/T 39323850 intron_variant
C/T 39323890 intron_variant
A/G 39323899 intron_variant
C/T 39323902 intron_variant
C/T 39323942 intron_variant
A/C 39323946 intron_variant
A/C 39323950 intron_variant
T/A 39323968 intron_variant
T/C 39323978 intron_variant
A/T 39324026 intron_variant
C/A 39324045 intron_variant
A/G 39324063 intron_variant
C/T 39324077 intron_variant
G/A 39324079 intron_variant
G/C 39324097 intron_variant
T/C 39324111 intron_variant
G/A 39324163 intron_variant
A/T 39324171 upstream_gene_variant
T/C 39324204 upstream_gene_variant
T/C 39324218 upstream_gene_variant
T/C 39324245 upstream_gene_variant
G/A 39324275 missense_variant p.Asp62Asn
G/A 39324294 missense_variant p.Gly68Asp
T/C 39324301 synonymous_variant p.Asn70Asn
T/C 39324352 synonymous_variant p.Asp87Asp
G/C 39324362 splice_donor_variant&intron_variant
T/C 39324371 upstream_gene_variant
T/C 39324475 synonymous_variant p.Thr101Thr
G/A 39324511 synonymous_variant p.Gln113Gln
A/G 39324549 upstream_gene_variant
G/T 39324576 upstream_gene_variant
C/T 39324676 upstream_gene_variant
T/A 39324835 upstream_gene_variant
C/T 39324859 missense_variant p.Ala121Val
C/T 39324873 missense_variant p.Arg126Cys
A/G 39324883 missense_variant p.Glu129Gly
A/G 39324899 splice_region_variant&synonymous_variant p.Arg134Arg
G/A 39324919 upstream_gene_variant
T/G 39324944 upstream_gene_variant
T/C 39324983 upstream_gene_variant
C/T 39324985 upstream_gene_variant
C/A 39325066 missense_variant p.Leu147Ile
C/A 39325076 missense_variant p.Ala150Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10007.1
MEEEKGKSAISMVLSVATTILISVLGSVFALQVVEKMKKRQWVAARREELAKKKCCAMESDDVEIGAGNNRRVSGGVDLGAVEEGDDVDLVLVRKAKNQYTWKGFSAISEALQELKRKMKARFRLRDFEVLPYRRFLLVREERLIMATNG*


CDS Sequence:
>Vu_10007.1
ATGGAGGAAGAAAAAGGGAAATCCGCGATTTCCATGGTGCTCTCGGTGGCGACAACAATTTTGATTTCTGTTTTGGGATCTGTGTTTGCTTTGCAAGTAGTGGAGAAGATGAAGAAGCGGCAATGGGTGGCGGCAAGGCGTGAAGAACTCGCGAAGAAGAAATGTTGCGCGATGGAGAGTGACGATGTAGAGATCGGAGCCGGCAATAATAGAAGAGTCAGTGGAGGCGTGGATCTTGGTGCGGTGGAGGAAGGCGACGATGTGGATCTTGTGCTGGTCAGAAAAGCTAAGAATCAGTATACTTGGAAAGGCTTTTCTGCGATTTCCGAGGCTTTGCAGGAACTCAAGAGGAAGATGAAGGCGCGATTTAGGCTTCGCGATTTTGAGGTTTTGCCCTACAGAAGGTTTTTACTGGTTCGCGAAGAGAGATTGATCATGGCTACTAATGGCTGA


Promoter Sequence:
>Vu_10007::LG2:39321050-39323050(+)
TTCACTGAGAACATTCCTCACCTCTCGGTTTGGACTAGGAATTCACAAAGAACGTTCCCTAGGTTTAGTGGACGAGAATGAGAGTTCTCTACATCTGGCGGCGCGTGCATTGTTGTCTCCAATGCCGACCACTTTCGTTGGACTCACCACAATCTACTCTCTTTGGATATGACCTTGTTGTGTTGATTGAGTCTCTTTCGATTTTTAGGTTTTTTTCTCTTTTCTGCTTGTTCATGGCTTCTTCCCCACTATCTCTTTGTACCCTTTTTTTGTCACTAGTACGTTTGACCCGTTTATATATACTAAATGTGTCAATGTGCATTTATCTATTGATAAGTTATATGATATTAATTATACAACTTGGGTATCAATCGTGACAACTATTGATTTCGCTGTAGTTACCCCGTTAGTCGAAAGTTAATGCTTAGTTATGCATTGTTATCAAGGGTACTTGTACTTTTCTTTAAACCAAATTTTCATTCGTACAAAACATGTTTTGAAATCTAGGAACACAACAAATTATTATACACCAATGATACTCAATATATTTATGGTGTTTCTTATGATCTTTTCAGTGTTGTTGCTCTTTAACATTAAGACTCTATGGTTGTCGTTGAAGCTATCAAAGTAATACTACTTTTCAAGGCAATTTCAGTATTGCCAAGTAGTATTCAAGAAAGTATATAGGGTTAAAGTAACCTTGAGTCGTCTCCCAACGAATACGCCTTTTAATATTTGAATCTTATGAATGCAATGCAATGTTCAAGAATAAAAATGATGTTTGGAGAAAGTTTAAAGAACAAATAAGAAATTTAAAAATGATTATAATGAAATAGGCTAATTCCACTGCTTTTCCAAGATAGATTCATCATCGGTTATTCACAGATAATTGTTCAATTGATTATTATTTAAGTTTCAAATTAATTAAAGTACATTCTTAATTAATTTGAGGGCGATCAAGCACTTAACCAAAGTAAATTCTCAATCAAATGCAAAATCTTTCTAGATTATTCACAATGAATTCAACCAAAGTACATTCTCAATCAAATCCTATTATGTTTAATCATGTCTATTCTTAAATCGCCTAACCAAATTAAAAACTAATCAATCAAAGTAAATTCTTAATTGATTATAGTTGAAATTATTACTACCAATCAAAGTACATTCTCAATTGATAGTAAAAACCAATTAATCATATGAAAGTTCCTAAATTAAATCAAAGTAGATTCTCAATTAAATCTAGAAACCCTAGAACTCATATAATCAATATGCATGTAGATTCAAACACATTATGATGCAAGAATCTTTGCTTTTAATTTGATAGAGAGATGAAAGACATAGAGAGAGAATAACTTAAAGCAATAATCAAAATAAACAATTGCATTAACTCAATCTAACCTCATAATCCATAATGGAATTATAGCAAAATAGTCCTAGATGCTTAGCTCTCCATGAATGGAGTTGAATACAAGATGAAATAAGAGAGAGAAGTGGTGAATGAATAAATGAAGTGAAGTCCCTCTTAGGTCTCTTTATATAGGGCTTGATTGGGCTTGGACTCTGAATATTCAGTTGACAAAATCTTTTATCTTATATCTTCCAAATAACTAAAAGATTTAGATAATTATAACATTATTTGGAAGATATTTTTTGTTGATATTCTCAAATTAAATTAATTCAACAACTGAATTTTATCTTTTAGCTTTTCTGACTTTCCAAAATTGCACAAATGCCCTAAAATTTCTTCTATCTGCACTTTAGTCCCTTCTGAATTTCCCAAAATTGCACTAGAAGTCCCTATTTGACCAGAGAAGGCTTGTTAACCATCTTTGACTCATATGGTCGTGGCCAATGGGAACTCGCCACGTGTCAGCCCCTTTCCCACCCAAAATTAGGGTTTTGTAGATTGGGGGAAAGGGCTTTCTCTGTGCCGCCACTTTGCCGTCATGAGGAAAAGAGGAGACGCTTTCGGCACCGCTGTTGCAAACTGTCTTCGCTGA


Gene Sequence:
>Vu_10007(+)
ATGGAGGAAGAAAAAGGGAAATCCGCGATTTCCATGGTGCTCTCGGTGGCGACAACAATTTTGATTTCTGTTTTGGGATCTGTGTTTGCTTTGCAAGTAGTGGAGAAGATGAAGAAGCGGCAATGGGTGGCGGCAAGGCGTGAAGAACTCGCGAAGAAGAAATGTTGCGCGATGGTGGAGATATTCACCCAATGGTGGCCTCGCGACGATGGTCTTCGCGATTCTGGGTGGCTACGGCGAGACTCTATGGTGGCCTGTAGTGGCGCGGCGGCAAGGTGGTGGCAGAAGGTGATGTGCGGCATGCGATGGCTGCCATGGAGGATAGCGGCGTGGTGCACGATAAAGGAGGAGAGTGATAGAGGACTTGCAGCTCTGGTTTGGGGTTGGCTGTTGAGAAGCTCGCGAGGAAGAAGATGGTGGCCGACGACGTGGTTGTTTGGATCTGCGGCGTGGTGGCGCGATGATGATGGCTGCGACGACGCATGGCCTGGCAGAAGCGGAACGACAGCTAGGGTTTCAATGGGTTGAAAATGATGCTCATGTGTTAGGGTTGAGGTGGCGTGTTCTGATTGGTTCACTAGTGAGTGCAAGGATCAGTGGTGTGACATCATCTGAGTGGTTCAATCTGTTAGTGGTGGACTGCCATGTGGCATGATTTGGTGAAGTTTGGCTTAGGAGGGGTATGGGTAGGGAAATTTAGGAGGTGTATTTAGAATATGGTTACCATTTGGCTTAGTATTGGGCCTGGTTAAGAGAAGAGGGGTGTATGTAGGGAAATTGGGAGGTGCAAGGGTAAAAGTAGCCTGTTTGGCCCATCTGTACATTATTTTCCAAATAAAACCTGATTTTAGGCCTTAATTTGCAATTTAGATCAATAAAGCTTTAATTTCAGCTGCACAAATAAATATTAGAAAATGGTTTAAACCCTTGGTTGGTCCTCAAGTTTTTTGGAGAATCTCAAGTGGTCATCGTTTTTATTTCGGTCTCAATTGGGTCCATAAACTTGTAAAATTAAGCCAATTAAGCCCTGACCGTTAAGTTTTCATAGATGGCGTTAATTCTTGATGACGTTGTTCACACATAATATGTTGATGTGTATTATTTGATTACGTGGAATTTAAATTTTTTATTTAAATTAAGGAATTATGAGATGGTAAAATTTAATTGGTTTAGGTTAAAATTTAGGGATTTTGTTTTTTCAAAGGCTTTGAGTTAGGAGAGTGACGATGTAGAGATCGGAGCCGGCAATAATAGAAGAGTCAGTGGAGGCGTGGATCTTGGTGCGGTGGAGGAAGGCGACGATGTGGATCTTGTATTCGATTGCTTACAAGGTTTTGTGCTTGCTTTATGTTTTCTTTTTTCTTTTTTTTAATTCTTTGTTTTTATATTTCAGGTGCTGGTCAGAAAAGCTAAGAATCAGTATACTTGGAAAGGCTTTTCTGCGATTTCCGAGGCTTTGCAGGAACTCAAGGTTGTTTTTCTTCTGAAATTAAATGAATATGTTGGACTATTGGCGTTTAAGATTTGATGTTTATTTTATGTTTGGAGACCAAGAAAAAAATGTTGAAGGAAATCATCGGCTTCGAGGAAACATAAATGTTCTTCTTCTGGGTGATTTAGGAACAGCGACGTCTCAATTTCTCAAATATAATTTATCAAGCTAGTATAATAGATTTTTATTCTGAAGTTTTTAATTAATTCTCCACTTCCATTCACTCAACTGTTGCTTTGTAAGTCTTTGAGATTTGGTTCTCTTTGCTTAATACTTTTCTTCTCCCTCATATTTGGTTTCGCAGAGGAAGATGAAGGCGCGATTTAGGCTTCGCGATTTTGAGGTTTTGCCCTACAGAAGGTTATAGTGATTATACAGGAGGTGGTTACAGTGATTATTATGTAGGAGACGTCAGGTTCGTTGATGGTGGTGCGTTGATTGTGCTGTTGGTGGTTCGCGTTTTGTGTTGCGATTTGGCTTCTTCTAAAGGTTTTTACTGGTTCGCGAAGAGAGATTGATCATGGCTACTAATGGCTGA