Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01765 LG1 20856212 20859401 PREDICTED: 1-(5-phosphoribosyl)-5-
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   tryptophan biosynthetic process, tryptophan biosynthetic process, tryptophan biosynthetic process, histidine biosynthetic process, histidine biosynthetic process, histidine biosynthetic process, histidine biosynthetic process, histidine biosynthetic process, histidine biosynthetic process, histidine biosynthetic process, histidine biosynthetic process, histidine biosynthetic process
Cellular Component   is active in   cytoplasm
Cellular Component   located in   chloroplast, chloroplast, chloroplast
Molecular Function   enables   1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
Pathway   B 09105 Amino acid metabolism   C 00340 Histidine metabolism [PATH:ko00340]
SNP Position Effect Amino acid change
C/G 20856228 missense_variant p.Ser6Cys
A/G 20856309 missense_variant p.His33Arg
T/C 20856316 synonymous_variant p.Ser35Ser
A/G 20856382 synonymous_variant p.Gly57Gly
C/A 20856409 synonymous_variant p.Thr66Thr
G/A 20856476 missense_variant p.Ala89Thr
T/C 20856490 synonymous_variant p.Thr93Thr
T/A 20856559 synonymous_variant p.Val116Val
T/G 20856568 missense_variant p.Phe119Leu
A/C 20856592 synonymous_variant p.Gly127Gly
C/A 20856624 missense_variant p.Ala138Asp
G/T 20856633 missense_variant p.Trp141Leu
A/C 20856660 missense_variant p.His150Pro
T/C 20856857 intron_variant
C/T 20856926 missense_variant p.Thr211Met
A/G 20856949 missense_variant p.Thr219Ala
T/A 20856972 missense_variant p.Phe226Leu
G/A 20856978 missense_variant p.Met228Ile
C/A 20857005 synonymous_variant p.Ile237Ile
C/T 20857106 missense_variant p.Pro271Leu
A/G 20857161 intron_variant
G/A 20857163 intron_variant
G/T 20857192 intron_variant
G/A 20857284 intron_variant
C/G 20857324 intron_variant
T/G 20857360 downstream_gene_variant
A/T 20857410 downstream_gene_variant
G/T 20857415 downstream_gene_variant
T/C 20857450 downstream_gene_variant
G/A 20857460 downstream_gene_variant
G/C 20857491 downstream_gene_variant
C/T 20857496 downstream_gene_variant
A/G 20857512 downstream_gene_variant
C/T 20857544 downstream_gene_variant
A/C 20857608 downstream_gene_variant
G/A 20857659 downstream_gene_variant
C/T 20857778 downstream_gene_variant
T/C 20857782 downstream_gene_variant
T/C 20857808 downstream_gene_variant
T/G 20857855 downstream_gene_variant
C/T 20857859 downstream_gene_variant
T/C 20857860 downstream_gene_variant
G/A 20857972 downstream_gene_variant
A/C 20857982 downstream_gene_variant
A/C 20858042 downstream_gene_variant
A/T 20858100 downstream_gene_variant
G/C 20858106 downstream_gene_variant
A/T 20858112 downstream_gene_variant
G/A 20858161 downstream_gene_variant
A/T 20858256 downstream_gene_variant
A/T 20858263 downstream_gene_variant
G/A 20858271 downstream_gene_variant
G/A 20858501 downstream_gene_variant
C/A 20858509 downstream_gene_variant
C/T 20858521 downstream_gene_variant
G/C 20858544 downstream_gene_variant
T/G 20858568 downstream_gene_variant
A/C 20858611 downstream_gene_variant
A/G 20858640 downstream_gene_variant
T/G 20858641 downstream_gene_variant
C/A 20858671 downstream_gene_variant
C/G 20858680 downstream_gene_variant
G/A 20858728 downstream_gene_variant
T/G 20858743 downstream_gene_variant
T/C 20858749 downstream_gene_variant
T/A 20858839 downstream_gene_variant
A/G 20858935 downstream_gene_variant
A/G 20858972 downstream_gene_variant
T/C 20859025 downstream_gene_variant
T/C 20859039 downstream_gene_variant
A/G 20859052 downstream_gene_variant
A/C 20859083 downstream_gene_variant
G/T 20859162 downstream_gene_variant
G/A 20859185 downstream_gene_variant
T/C 20859279 missense_variant p.Ser293Pro
T/C 20859307 missense_variant p.Val302Ala
T/A 20859308 synonymous_variant p.Val302Val
A/G 20859317 synonymous_variant p.Leu305Leu
G/A 20859331 missense_variant p.Arg310Gln
A/G 20859339 missense_variant p.Arg313Gly
T/C 20859361 missense_variant p.Met320Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01765.1
MMKNISASHSFGLFVTSPIFCPNNLPVITLSSHSSRRSPLSIQCAVQFRPCIDIHKGKVKQIVGSTLQDLKGGDGLDPVTNFESDKSAAEYATLYRRDGLTGGHVIMLGADPLSKVSAFEALHAYPGGLQVGGGINAANCWSFIEEGASHVIVTSYVFNDGQMDIGRLKDLVQIVGKERLVLDLSCRKKGCFADEFLVHGVDVEGKRLGIDEELVALLDKHSPIPVSYAGGVTGMADLERIKSAGMERVDVTVGSALDIFGGNLSYEEVLAWHYAYGLQALGRQLHAMGLTDVSKVDPDSSIVAALMDMYRSMRMLLLSSMVVQQLTILYDIL*


CDS Sequence:
>Vu_01765.1
ATGATGAAAAATATCTCTGCATCACATTCCTTCGGGCTTTTCGTCACCTCACCCATCTTTTGTCCCAATAATCTTCCTGTTATCACTCTCTCCTCACATTCCAGTAGAAGATCTCCTCTTTCCATTCAATGCGCGGTTCAATTCCGTCCCTGCATCGATATCCACAAGGGAAAAGTGAAACAAATTGTGGGGTCAACCTTGCAAGACTTGAAAGGGGGTGATGGGTTGGATCCTGTGACCAATTTTGAGTCTGATAAGTCAGCTGCCGAGTATGCTACTCTTTACAGACGAGATGGACTCACGGGTGGCCACGTCATCATGCTTGGTGCAGACCCTTTGAGCAAAGTTTCTGCCTTTGAAGCATTGCATGCTTATCCTGGAGGTCTACAAGTTGGAGGGGGGATAAATGCTGCCAATTGTTGGAGTTTCATAGAAGAGGGAGCGAGCCATGTCATTGTGACATCTTATGTATTCAATGATGGACAAATGGATATTGGAAGGCTGAAAGATCTTGTTCAAATTGTTGGCAAAGAGAGGCTTGTGTTGGATCTCAGTTGTAGAAAAAAAGGATGTTTTGCGGATGAGTTTCTGGTCCATGGTGTAGATGTTGAAGGGAAGAGGTTGGGAATTGACGAAGAGCTTGTTGCCTTGCTTGACAAACATTCACCAATTCCTGTTTCCTATGCTGGTGGTGTGACTGGAATGGCTGATCTAGAGAGGATAAAAAGTGCCGGAATGGAGCGTGTGGATGTAACTGTGGGTAGTGCCTTGGATATTTTTGGAGGAAACTTGTCTTATGAAGAGGTTTTAGCCTGGCATTATGCATATGGTCTTCAAGCTTTAGGACGCCAGCTCCATGCAATGGGTTTGACTGATGTGTCAAAAGTGGATCCTGATAGTAGTATCGTTGCAGCTCTAATGGATATGTATCGAAGCATGAGGATGCTCTTGCTCAGTAGTATGGTGGTTCAGCAGCTCACAATACTGTATGACATTTTATGA


Promoter Sequence:
>Vu_01765::LG1:20854212-20856212(+)
TTGTAAAGATTTAAAAAATAAAAAATAATTGTGTATTAAATATAACACACCTACCACAATACATAAAACATGTATTTATATATTTCAGGATAGACTTCAGATAAGTGTTGACCTAATTATGGTTCAAATGGTAATGATAATGCTTTGGATAAATTAAATGTCTTTAAAATTAATTTTTGTTTAAGGTCGATCGCTTCATTCACGATACTGAACCGACTGGCTCACTAGATGTCTCTGATTGTTGGGATTGTCCGGTACCGAAAGGACATACAGTACGCAGACCCCCCCAAGCCCAAACACATAAGATGTGTGAAGGCTTTACACTTTGAAGGCTTCCATGCGTTTTTGAGATAGTGGAGTCGCTTCATGACCGTTCAACTGGGAAGCTATCCCCAGGGATGTGATAGTTGGGAGGAGTCATAGTCAATGGGAATAGGACACGTGACTTGTTGGAATTTGTGCATCTCTTGAAATGAAGGTTACAAGATTTCGGCCATCAAGAGCGCCCATTTCGACTATAAATAGAAGTGGGGCTCAATGTCATTTTCACCACTTCTATCAACTCTTCTTAAAAGAACTGAGCATTTTCGCACTTCTCTTCCCCCAAAGGTAATAATGTTGATTGTTCTGTTATACTTGTCTGAGGAGTCTAAAGGGAGGGGAGGTTAGGGTTATGTTGATAGCCATTAGAGTCTTCCCACTTTGGATCAATCGAGCGAGACATGGATTTGGGTTACGCAGTGGCTTGTGTAAATACAAATAACGTCATAGAAGAAAATAAGGGTGAGACAGTCACGATTACAGTGGATGCGATCGAGGAGTGGATCGATGGTTGTGCGTCAATCCTGCCCATTTTGGGGTATGACTGGGCTCCTCACGAGACTGGGAATTATGTGTCTTCCTTCATCCCCGAGAAGTCCTTGGAGAAGTTCGCTAGTGAAGTGGGCTTGGTGAGGGCGCCGATGCTAAGCACTTCAACCTTGTTGTGTGCAAGAAGAGCACTTCAACCATGGCATGAAAGGTTATGCGTTGGATTTCTTCTACACATATTCCACCATGTTCAAGGATATGTCTGTTAGGCTACCCCTTAACGAGTTTTCAAATGGGTGTTCTTCGAGAACTTAGCATGGCATCTACCCAACTTCACCTGAACGAGTGGATTTTTATACAAACGTTCGAAGTAATATGTAAATCCTTGAATGTCTCTCACTCCACCTAGTTTTTTCCTTTTTTTCTAGACCCGATCACATTGCAACAGGGAATGGGTATCCCTTATATCAAAGAAAGGGCGGTGGTTGTTCATGTTGTTTAATGCTTCCTTTAAGGGGTTTAAAACCAACTACCTAAAAATAGTAATGAAGGTTGTTGGTCGGTCTACTTATTTTTTGAATAATGGTCAGCTAAAGTCTACAATGACGCCCAACGATCTCTAGATGGTCGAATTGGTCAACTAATTACTACGTCGTCTCTCCTCCTAAAGTCTCATCTATCTTATCGATCATGACGCGCTTTGTAATAGAGTGTTCGGTAAGCTTTCACATTTTCTTTGCTCCTTGGTAGGAGTGGACTTTTTTATATTCTTCTTTAGAAAGTACACACATTAGTGAATTGCGAGCTTTAGAGTTTAACAGATATAGTTGTTTCTACTCGTATGTCCATTTATTTTTGGTGAGAGACTCTCCTCCTTTATCAATGGGTATGTAGTTGCCCTTTTCAACGATGTCTCACATGTTAATGTGACATGATTTAAAGAATGTGATCATTCTTTGTTTTCAATAATCAAACTTCTCTCCTTTGAATAGAGGAGGACGATTATTATCCATGTTTCATAATTATTTTCTCGAGTCCTATTAAGAATTAATCCTGTAAAATTAGTTCTGATACGAACTAAAGTACTTGGAAAAACATTAAAAAGAGGTTTAAGAGTGTTATGAAAAAACATTTTGCAAAAAAGATAATATAAATCCAAGATTTGATATGACCCCAGTTTTCTTAAGGAA


Gene Sequence:
>Vu_01765(+)
ATGATGAAAAATATCTCTGCATCACATTCCTTCGGGCTTTTCGTCACCTCACCCATCTTTTGTCCCAATAATCTTCCTGTTATCACTCTCTCCTCACATTCCAGTAGAAGATCTCCTCTTTCCATTCAATGCGCGGTTCAATTCCGTCCCTGCATCGATATCCACAAGGGAAAAGTGAAACAAATTGTGGGGTCAACCTTGCAAGACTTGAAAGGGGGTGATGGGTTGGATCCTGTGACCAATTTTGAGTCTGATAAGTCAGCTGCCGAGTATGCTACTCTTTACAGACGAGATGGACTCACGGGTGGCCACGTCATCATGCTTGGTGCAGACCCTTTGAGCAAAGTTTCTGCCTTTGAAGCATTGCATGCTTATCCTGGAGGTCTACAAGTTGGAGGGGGGATAAATGCTGCCAATTGTTGGAGTTTCATAGAAGAGGGAGCGAGCCATGTCATTGTGACATCTTATGTATTCAATGATGGACAAATGGATATTGGAAGGCTGAAAGATCTTGTTCAAATTGTTGGCAAAGAGAGGCTTGTGTTGGATCTCAGTTGTAGAAAAAAAGGATGGTAAATATGCAATTGTCACTGATAGATGGCAGAAGTTCAGTAATGTTTTTGTTGATCCTGGTGTAATGGAATTTCTGGCTAGTTTTGCGGATGAGTTTCTGGTCCATGGTGTAGATGTTGAAGGGAAGAGGTTGGGAATTGACGAAGAGCTTGTTGCCTTGCTTGACAAACATTCACCAATTCCTGTTTCCTATGCTGGTGGTGTGACTGGAATGGCTGATCTAGAGAGGATAAAAAGTGCCGGAATGGAGCGTGTGGATGTAACTGTGGGTAGTGCCTTGGATATTTTTGGAGGAAACTTGTCTTATGAAGAGGTTTTAGCCTGGCATGTACGGCAAAAGGCCTATGTAGTTTGACTAATGTGTTTCTTCTAATTGAAGATAGGGACTGGTGTGCAAGGATCTGTTTGTGGTTTTTCTATAGATGTGTAACCATTTATCAGCTTATTTTTTAATGTCTGAAGGCAAATTGAACAATTGATAACAGACTATCTAGTATGAGCTGTCTACAACAATCACCAGCCAACTGTTACCTCTATTTCTAGCAGATGATTGGGAATTGAAGGTTCAACCAGCATAAGAGCTTGCTGTTAGAAGGAACCAAAAGGGCATCTCGAAGTTCTTATTAGGTAGAAGGAATTGCCAGATTTTGAAAATTCGTGGGAAGTTCTATCTACGTTCAAGGAGAATTTTCCTGACTTTCACCTTGAGGACAAGGTGCATCTTGAGAAGGGGATTGTTGATAGGAATCCGGAAATAATCAGGCCCAAACCCAAAATATTTAAGGTGTATGTTAGAAAGAGAAGGAATGGCAAAGTGGGGAATAAAAATGGCAGGAGAGAGAATGAGAAGAATCCTTCCATGTAACAAACTGCCGAGCTGGCATGGTAGTTAAGAAGTGATTCTGTTGTATGGGTATAAGATGTGAGAAGACAGTAGGGGGAGGGCGGTGCTGGTTTTGGGCTGGGATTTGGGGGAGACTAGACACTCTCTAACTGTTTAGAGATACTTTCCATTTGTCTTACTGCTCTGTACTTTCTTTCCTGATGCAGGCACTGATATCATTATGATATTGTCTTGTTTTCTTTACTAATAAAGTGATTATTCAGCTATACTGTTTTTTTATGGTACCAAGCCCTTTTGTTTTCCATAAAATAGCAAAGATGAGAAAAAAAAAATGCAGGGTCCTGTTACCTTTTAGACTCATACTTCTGCTATGAGATATGACCACCTGCTGCTCTAGAGCCCTCACTGTTAATATATGCACTTTCCCGAATTAAGAGACATGGAACTAGAAGTCTCCATGAAAATCATGAAATTATTGAATAAATTCATATTCTTTCTTGTTTTGATCTTGCATTTCTTGAGGTTTTGATCTGTCTATTTTTGGACTTTGAAAATGAAGTTTCTTTCCGATTGTCTTTTCATTTTTGTCTGTTTCACTTCAGTTTTGGATTACTGAGAAGTGGACTTAATCTGTAATGAATGGTGATGATTTCTGATAACAATGGAAAGCTAGGTCTTAGTAGTAATGCCACCCAAGAAATAATAGATTATACCAGTAGTCATATATCTATGTTATCTCTCCTCTAAGGGTCTTTAAGCCTGGGCTCCAGTAGATAATCACATTCTGTTGTTACCATATATTTAAACTTAAATACATAAATAATTCGATGAATGTTTTATTTTGATGGTGTTAATGTAACAGCAATTGTGGTGGCAACAGCACCTGAAGAGGCTCCAATGAAAAAATTTGAAAATGTTAAGAGATCTAATATAAAATCATTTGTCATCATCAAAGTTTTTGTGATTAGTAATTAGAGTCACCATGGTCTAGTATTTTAGAATTTTCTCCTTATCTCATTGTTTGTACTTCGAGTACAAAAAGCTTTCCGGGCCAAGCCCATTTTGCCATCCCTAGGTAGAGATGTGATGCAGAATATTTGTGTCTTCGCCTAACTAAATGTTTTTCGTTCCTCATTCCTTACATCAGGAGCAATACAGCATGAAGTGTGGCCTAGGACCAAATAACAAACGGAACCGTAGAACTAACAGCTCAAGCCTATTACTACTAAGCATAATCTTTGGCTGGGTTTGTCTATTTGGACTGAGCCAACAAGATGCTATTGCATTTTTATTTTATCATAATTGTAAAAGTGCAACATGTTGCTTTAGAGAATGGAAGTTCTATTTATGTTCTCAACTAATTCTTTATTTTGTTAGGGATGCTTCACTGAGAGATTTGAGAGCTAGTTCTGGTGATATTGTGAGGATTGGGAACAGTAATGAAATGATAAATTATGTGGTTAACCGAGACAAAGAGACTGACACTAACCATCAGATTAAAACAGATAATTTTAGTGATGCACCACATTTTCAGAGTGGAGTTCTTCGTACCAACGGCATTGACTGCTTGGACTGTACAAGTGTTGCCAGTATGCATATGGTCTTCAAGCTTTAGGACGCCAGCTCCATGCAATGGGTTTGACTGATGTGTCAAAAGTGGATCCTGATAGTAGTATCGTTGCAGCTCTAATGGATATGTATCGAAGCATGAGGATGCTCTTGCTCAGTAGTATGGTGGTTCAGCAGCTCACAATACTGTATGACATTTTATGA