Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01659 LG1 19431174 19434044 "PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial-like "
 Map

Annotations  
category   relationship type   keyword
Pathway   B 09141 Transport and catabolism   C 04139 Mitophagy - yeast [PATH:ko04139]
SNP Position Effect Amino acid change
C/T 19431311 stop_gained p.Trp192*
T/A 19431374 intron_variant
C/A 19431507 stop_gained p.Glu156*
T/A 19431513 missense_variant p.Arg154Trp
G/A 19431526 synonymous_variant p.Tyr149Tyr
C/A 19431540 stop_gained p.Glu145*
A/C 19431545 missense_variant p.Phe143Cys
A/T 19431554 missense_variant p.Phe140Tyr
T/G 19431561 missense_variant p.Lys138Gln
T/C 19431562 synonymous_variant p.Arg137Arg
C/T 19431630 missense_variant p.Gly115Ser
T/A 19431633 missense_variant p.Ile114Phe
G/A 19431647 splice_region_variant&intron_variant
T/A 19431650 splice_region_variant&intron_variant
C/T 19431660 intron_variant
T/C 19431668 intron_variant
T/C 19431670 intron_variant
A/G 19431688 intron_variant
G/T 19431820 intron_variant
A/T 19431998 intron_variant
G/C 19432074 intron_variant
T/C 19432082 intron_variant
T/A 19432108 intron_variant
T/G 19432348 intron_variant
C/T 19432519 intron_variant
A/C 19432526 intron_variant
C/T 19432585 intron_variant
T/C 19432666 intron_variant
C/T 19432667 intron_variant
C/T 19432669 intron_variant
C/T 19432677 intron_variant
C/G 19432735 intron_variant
A/G 19433011 intron_variant
G/C 19433075 intron_variant
C/G 19433087 intron_variant
G/A 19433151 intron_variant
G/T 19433153 intron_variant
G/C 19433156 intron_variant
G/A 19433158 intron_variant
T/A 19433162 intron_variant
T/C 19433173 intron_variant
A/T 19433184 intron_variant
C/A 19433243 intron_variant
T/C 19433257 stop_retained_variant p.Ter108Ter
A/T 19433259 stop_lost p.Ter108Lysext*?
T/G 19433270 missense_variant p.Asn104Thr
G/C 19433278 missense_variant p.Asn101Lys
G/A 19433473 synonymous_variant p.Cys36Cys
A/T 19433490 splice_acceptor_variant&intron_variant
A/G 19433516 intron_variant
A/T 19433522 intron_variant
A/C 19433536 intron_variant
G/T 19433599 intron_variant
C/A 19433701 missense_variant&splice_region_variant p.Val2Phe
C/A 19433759 downstream_gene_variant
T/A 19433850 downstream_gene_variant
T/G 19433954 downstream_gene_variant
C/G 19433970 downstream_gene_variant
C/T 19433971 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01659.1
MVARRQSKFGQIQSVFARSYFSVNKFGHRRGYRLLGAQGRFQSRRVRDAVEATKVAHLKELYRQNDPEAVIREFESQPSLHNTSALSEYVKAVVQVDRLDETELMKTFKRGMSKSVASEEETAAGLSALRNLGKSTKENIFGTSRNPIHTVAREGGNIKVQLWRTFRAFLYSFLVICGVEALYEDRGISKGLGIHEAVKPIMETSTKFSDVKGVDEAKAELEEIFHYLRDPKVAFLP*


CDS Sequence:
>Vu_01659.1
ATGGTTGCAAGACGACAATCTAAATTTGGACAGATTCAAAGTGTGTTTGCTAGAAGCTATTTTTCTGTCAATAAGTTTGGACATCGTCGAGGTTATAGACTTTTGGGTGCCCAAGGGAGATTTCAGTCTCGTCGAGTACGTGATGCAGTTGAAGCCACTAAAGTTGCTCATCTCAAAGAGCTTTACCGTCAGAATGATCCTGAGGCTGTGATTAGAGAATTTGAAAGCCAACCATCTTTGCATAATACCTCAGCTCTTTCCGAATACGTGAAAGCAGTGGTGCAAGTTGATAGGCTTGACGAAACTGAATTAATGAAGACATTTAAGAGAGGCATGTCCAAATCGGTAGCGAGTGAGGAAGAAACTGCAGCTGGACTTTCTGCTTTAAGAAATTTAGGAAAATCAACAAAAGAAAATATTTTTGGAACTTCTAGGAATCCAATCCATACGGTGGCTAGAGAAGGTGGGAATATAAAAGTTCAGTTATGGCGTACGTTCAGGGCCTTTTTGTATTCCTTTCTCGTGATTTGTGGTGTAGAAGCACTCTATGAAGATAGAGGAATTAGTAAAGGACTTGGTATACATGAAGCAGTGAAACCCATCATGGAAACAAGCACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGCTGAGCTGGAAGAAATTTTTCATTACCTTCGAGATCCTAAGGTAGCTTTTTTGCCATAA


Promoter Sequence:
>Vu_01659::LG1:19434044-19436044(-)
TTCCTTGTCAATCATGATCGACCATGGATTGATCCTTATGGTCGAGGGTAATACCCAAATCCCTTTCTTACTAATTATGATGTTTTAAGTTTGCCTTAACTCAAATGACTTTTATTTCTTTATATGCAGGTTTCTTCTATCCAGGGTTGCTTCTCAGGCTGAAGCAACTTGATGGAGAATTCACAGTTTTCTCTAATACAGAACGAAGAAACCATCCAACCATAATTAAGGTAAATAACACATAGCAGTAAAACATATTCATGCATCTAACCAGATGGGATACATATGCTTTAAAATTCTCATGATACATGCTGTAAAATATATAATTATAACTCTACAAATCCAAATAGGTAAACATACATGGTAAACTTCACTGAAATAAAAAAAAATGATTTTCTATTATATACTAATAAGAATAATATTTTAATATATACCGTTGCTTTCTAGAAATCATTCATATATATCTAGAAAATGTGAATGGAAGTGGATTTATATATCTGTAATCATGTTTACAGGGTAATCAAGGAAAACAATACGCACAGAAGAATCCAATCACTAAACATCAAATTAGCCACAATTTTCAAATTAAAAGGAAAAAAATAAATCAAGGCAGCAGATGCAATAAACATATTTTCTCAGGAAAAAGTATAATTAATTAACCATAACATTAAAGCAGCAATAACATAAAAAATATATCTCTGAGTTGTAAGAGTTGTTCCCTGGTAGCACACGCTCATGACCACCTTCTAACCGTAAATTGAAGCGGCAAAAAGAAACTAAAATACAAAATGTTTGCCTTAGACCCTCAAGAGAACTTGTTTAATCGATGCAAAACCGTGAAGGAACCAAGGAACCCTAGAATGGACCGATTGATCGGTGGAAAGGGATTATAATTGGTAGAATGAGATTATAATCGGTGGAAGATGAGGAAGTACAGGAGAAACCCTAACCTGAAAGCGAGGAAGATGCTCTATGATGGTGAAGGATGAGCTCTCGAGCCACTGAAAGTGAGGAAGACGACGCTGAGAAATGCTCTCTGATGTGCGAAAGAGAAAACGACGACACTGAGAAATGCTGCTTTACCCAAACGTGAAAAACTTCAAACGCTAAAAAGAAGATGAGAAACGCACAGTGAATGAGAAACACGAGCAACTTCAAACGGGAACAAGAGTTTTACCCAACCACCTCAACACGACTGAACGGACAACAATGGTAATCGAAATGAAGTTTTGCACAGAAAAGAAAGTATTGCGGGAAAAACAAACTGAAAATGTAAAATAATTTATACGTGATATAATATTTAACCGGTGTAAATCAATAATTTATACTCCTCTAATGTTAACAGCTATAAAAAAACTTTTTATATATATTTTTATTGTAACCTGTGTAAAAAAGTTTCTTATATTTACAAAATTGTCATTGTGTCACTTTCTATATAGTTGCTGAATTTTGATAGATATAAAAAATAGTTATAAAAAGTATATTTTTCACTATAGATAATAAAACCCACAACGCCCCGTTCTAATTCCTATCTTAAAAACTAACGTCGTAGAGGTGGAATATCATTTTTAAATTAGTAGTGGAGACATATGATAGTGTCAACTTGTTTTTCTTATATTATAAAAAGATTATTATTATAATTATGATAATTATTGAATAAAAAATATTATTATCTTGTAAAAGTATTTTTATTAAAATTACTTTATTAATGTTATAGATTATATATTAAGAAGGAACTTGCATGGAAATCGGTTTCCGGAATTTATTAAAATTATCGATTTTCTTTTTCGGTTTATTCAACTATTTCAAGCATTTCCATCACACACCAATCTTAAGAAGGTCCAGTTTCAAGAATTAATCAGATAGCTCGATCGCGCGAGCATGGCTTTGAGGCTTTTCATATCGCAGGCAAGTTGATTCTTACTCCTCAATCCAATACGTCCTTTGTCAATCTCCGATACGGAGATTGCATCCGTATCGATTTCAGCCTGTTGCGTTAT


Gene Sequence:
>Vu_01659(-)
ATGGTAATTTGTGTGTATGGAGTTTTTTGTTCTGTGACTTACGAATGAATATCCTGTGGAGGCTTCAAGTATCGGGTTTGCAGAGCTGATATTTAACTTATTAGTGTTCGTCTTATAGTGTTTTTATTAGTCGTCGAGCTTTTGATAATTTGCTCGTGATTCTACTTTCAAACCCTTCCATTTACACCAGGGAAATATGAGAACTTGAACTTGTGTTCATTATACATTTTGTGTGCATTATTGATTATGTTGCTAGTTTTTCCACAAAACTAGTTGGCATATGTGGTTTATATATCTTGGATTTATTTAATGATTTAGCTACTTTCATAATTTATTTTTACAGGTTGCAAGACGACAATCTAAATTTGGACAGATTCAAAGTGTGTTTGCTAGAAGCTATTTTTCTGTCAATAAGTTTGGACATCGTCGAGGTATAGATCCCTTCCTCCTAGACCATGCATTATTCTTATAGTTAACTTCTAGTTATTTGCTTATATAAGTTAAAAGTTTTGCTTTTCTTAATATAGCTTAATTTTATTCCCTAATTATGTAGGTTATAGACTTTTGGGTGCCCAAGGGAGATTTCAGTCTCGTCGAGTACGTGATGCAGTTGAAGCCACTAAAGTTGCTCATCTCAAAGAGCTTTACCGTCAGAATGATCCTGAGGCTGTGATTAGAGAATTTGAAAGCCAACCATCTTTGCATAATACCTCAGCTCTTTCCGAATACGTGAAAGCAGTGGTGCAAGTTGATAGGCTTGACGAAACTGAATTAATGAAGACATTTAAGAGAGGTGCTTATGTGGGTTGAACTGCTCATGTTTGTTTGCTTGATGTTATAATTCTAAGTGTAAGTTTAACTCTCATATTATATAAAATTAAGAAAGCACTACACTATATAAAAATGAAGATCTAATAATCTATTATTTTAAAGTTGAGTAAAGAATTGTATCAAGTTGGTATCTTATTACTATTGTTTCTCTTTAATCAGCTTCGTCCTTTACAGACCTAACATTTGATTCCCCTGTATTTGTTAATACTTGCTGATTGACCTTTTAATTTTATTCATTATTCAATTATATAAGGTCTTTGCCAAGCAGACAACCATATGTGCTTTTTGTGGTTCTGCTTTCTTTCAGGGTACTACATTGTTTCGTAGGGGTGTGGAAGTGGTCAAATTTTGTCTGCTAGAATTCACTGACCAAGCAGTTGTTTTCCTGACTTCAAATTTTGATCAAACAAAAGGTGTTGCTATTTTGATTATAAAGTTGGGTTATCCACTAATCATGAAACGGAAGTGTATCATATTAGTGTCTCGTTAGAAATGGACGATCAACTATTAGTCAGACAAAATCAAGCAAGTTACTTGTGATTGAGCGATCATGAAGTCGGATTGAATGGTCATACGACAAGAATTATTCTTAATACTGAAAAACTTAATATAAAATATGATTACTTCTGATTAGACCGTAATTAGGCCGTCATTAATTAAGGGTCCATAACGAAATGTATAAACATATGTATGAGTTAAGAAAGTAAGTGATTTTGCATTTACTGTGTCATTAATGTTTAAGCTATCAAATTTTTATTGATTTTGGCATGCAATACCTTCTGCAAGTAACCTCCAAGTGTTAGGGACGAACTGTAACGTAAAGACGAATAATTGGACTTAACATTCTGATGCCTTCGCAACCTATAAAGACTGTTGACCTCGATCTTTTTCCAGGTTGTCCATTAAGTAAAAAGTACCAGGGCAAGGATTTTTCTTTTCCATTTCTTTTAGAACTCTTCATTTATAGACTGCTAGGATTTGATGTTAAAGACACAAGCATTCTGTATAGTCTCCCCTCCCCCTTCACAGACACATGCACACCTTTTTTAAGTTGTACTTTGATATCTTATCTCATTTATCCGAGATTCTTGAATGAGAAGCGTATAGATATAAGTATTAATATACTTATATATTTTTCTCAAGTCAGCAAATAGTGTATGCTCTGTGCTTGTTAGAAATATTAGATAATATCTCTTATATTTCTAACGTGCCATTTGTCTGGTTGTACTGTCAGACAATAATCTTTTCCAGAGATTAAAAGGTTCGATTAATGTCTTGTAGCATTAATCAGATTGATAAAGAATCTAATTTTTCTCCGTGATTAAATTTAGAATCCGGAATGTTTTGCATCTTTTGGCCTTTGATGCAGTCCTTAAGCAAGTATGATTTTATACGACTGCATAAACAAAATTGTGCAAGACAGAAAATATATTCAGCTGACAAAAATTGGCACTCGAACTAATACTTGTCTAAAGTGATATTGATCATACTGCATCAGTCTTTGGATATTTTTTTCTCTAGCATATTTTTTAGACCATAAATTATAACCAGAGGTGATATGAGATTCCAGGCATGTCCAAATCGGTAGCGAGTGAGGAAGAAACTGCAGCTGGACTTTCTGCTTTAAGAAATTTAGGAAAATCAACAAAAGAAAATATTTTTGGAACTTCTAGGAATCCAATCCATACGGTGGCTAGAGAAGGTGGGAATATAAAAGTTCAGTTATGGCGTACGTTCAGGGCCTTTTTGTATTCCTTTCTCGTGATTTGTGGTGTAGAAGCACTCTATGAAGATAGAGGAATTAGTAAAGGTATTTCCTAGTCAGTATTGTTTTTTCATATTGTTTTTTTAATCTGATCTTAGAAGACATGTTCTCTGGTTTGTTTTTCCCTATTAGGACTTGGTATACATGAAGCAGTGAAACCCATCATGGAAACAAGCACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGCTGAGCTGGAAGAAATTTTTCATTACCTTCGAGATCCTAAGGTAGCTTTTTTGCCATAA