Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_37216	LG11	33424168	33424947	PREDICTED: zinc finger protein 3-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	33424247	missense_variant	p.Gly234Glu
C/A	33424664	missense_variant	p.Gly95Val
C/A	33424749	missense_variant	p.Asp67Tyr
T/A	33424870	missense_variant	p.Gln26His
C/T	33424887	missense_variant	p.Asp21Asn
A/T	33424892	missense_variant	p.Phe19Tyr
A/G	33424897	synonymous_variant	p.Ile17Ile
G/A	33424932	stop_gained	p.Gln6*

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_37216.1

MDLQRQEPCPFESLNMITFSDTMPCQRSSIDTQRKRNHTESDDQKHPNDSNPRVLLDLSLSNKDSGDDDESKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSTVPFLPSHGLYNKSLGIQVHAMINKPSHQAPIFGLCRSNGWQRQPLDSQPAIGNFRVGAESESSLADSVPKVGKFSTRVVTEGFGGHCFGSFSHLKSKQEKLQKLDLSLKL*

CDS Sequence:
>Vu_37216.1

ATGGATCTTCAAAGGCAAGAGCCATGCCCTTTTGAGAGCTTGAACATGATTACATTTTCAGATACTATGCCATGCCAAAGATCTTCCATAGACACTCAAAGAAAGAGGAATCACACAGAAAGTGATGATCAAAAGCACCCAAATGACTCAAATCCTCGTGTCTTACTAGATCTAAGTCTCTCCAACAAGGATTCAGGTGATGATGATGAGTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACGAATTTCTCTGAAAATTCATCAGAATCTAGTCAGGGAAATGAACTGGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTGGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACGTATTCCACCGTGCCTTTTCTTCCTTCTCACGGCTTATACAACAAATCACTTGGAATTCAGGTTCATGCCATGATTAACAAACCTTCTCATCAAGCACCCATTTTTGGGTTGTGCCGTTCCAATGGGTGGCAGAGGCAGCCTTTGGATTCTCAACCAGCAATTGGAAATTTTCGTGTGGGGGCAGAATCTGAGTCATCCTTGGCTGATAGTGTTCCAAAAGTAGGCAAGTTTTCCACAAGGGTAGTGACAGAGGGATTTGGAGGACACTGTTTTGGTAGCTTTTCTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA

Promoter Sequence:
>Vu_37216::LG11:33424947-33426947(-)

ATTGTGACAATCTTTTGAAGGAACCCAAGAATAGAAAAACTACCTGGTGAAATTTAGTTGTCTCATTTGTCAATTCTTAGCAAATAGCTATAAGTTGCTGAAAAGGGTATGACCACAATTTGAATAGTGGTTGGTTGAACTACAGGTTAGAAAGTTTGGTTTAAAATAAATCCCAAATTTTAGTAAAAAATTCCCTTTGCAACCAAACTAGCTTCTGGTTTATGATTGATTCAAAGAATGGTTTAAATATAAGTTGCTGAAGAAGTAGTTTACAATTGTTGAAGTTAAAGAAAATGTACACTACAAACCTCTTGTCAAAAAACTCGATTCACCATGTTGTTATTTCATTTATACAATCAATAATACAATTTACAAACTCAATAATACAATTTAAAAATATGAGTAGATACTTGTAAAATTGCAAGATACTACAATTTAAAAGCATTGTTCCAAGTATGGAACCCTCTGCAATTATTTGAAAGTACATCATCACATTCTGACTCTTGAGAATTTTTTCTGGTATGGACTTTTTCTTTTCTTAAATTGCAATGGAGTAAATGGGTGTGAAACATAAAGTGCACACCATTTCACATCCTTAGTTACGTAGGGCCTACCTACTACATCGACATTGGGAAGTGGTGACACCAATGTCCAGGTGTAATTGGCAATGAGAGCAGCATATTCCTCTTGCATGGCTTTAAGGCACTTCAAATCTATGGTTGTTGCTTGCTTGTGTGATTAGAAGCTTCGTCTAAAGAATGGTGAACAAACACAGAAACAGAAGGCCTCCAATGATTACATCTTGAAATTAGCCACAAGAGCCTCCATGAAAAAAGCCACTTTACTGTTTACAAAAATCAGACAGCTCATTCATTCAAGATATTCTTAAGTAATAATAATTCATGCATCTTAATTTGAAAACTAATACATTGAGTTAATGTCTCTGCTGGCATTGATTTATCAGAAAGATTCTACTTTTCATCTGAGTTTTTGGAATGATTAATTTATGGAGCATTCACAATTTAGTGGTTAAGCTAAGACTTTAATCCGTGGAACAACTTGGAATTTTGGAATAATTGATTCATGACGATGAACATCACATAGAAGACATAAACTCAACCAAATAGTTAACTAGGACAGAGAGATGGACTTTAAGCCTAACTCAATCTCACAAAACCAGCTTATAAGACGATGTTTGCACCCACTTATATGTTATAAATTGGTCTTATCTCTGGTGTGGGACTTCCAACAATAATGATTATGTGTTACTTTTATATTATTTGCTACACTGGATTTTGTATATTTAGTTGGTGTTCTAGAATGGAATAAGCTACTCTGGAAGGATTAAAGTGATATAAGTTTTTTACACCTGAAAAGTAAAGAAATTGAAAGTGTGGACAAGTCTATATCCTAGGAGGAGATAAAGAAAGCAAAATGCAGGACAAGGACAGAAGAGTTTCAGAGAAGATACTGCAAATCCACCAACAGGATTAAGAAATTCAGTATACCACACCTTTTATAAGACAAGTCCATTCTACAATACCACATTATTCTGAATTTCAAAAGTGGGGTATTGATCTTATCTTGGATTTTTAGCCCCTCATAACCTATAGACATGAATATACCGATAAAAGGCAGATACAGAGACCAGAAATGTAAAGTGACAAGTGAGAAGACAAATAAAAATTACCAAAAAAAAAAGAAAAAAAAAAAGAAACTTTGAATGAGGTATGCACTAGCAAGCTGTACGTGGGTGTTCTACATATGTTCCAATCAAGCACACACAGACAAAGGCATGTCTTAATTTTTAGGTCTTGCTATATTAAGACCTTGTAACTGTAAAATAGTGCTATCTACTTCTATACATAGCACACACCATTTATTGTTGTTACATCACTCACAAACTCCATCTTTCTTGTTCTTGTTCTTGTTCTTCCTGTTAAACCAAACTTCCATAACCAACACCACCACTGAGGCAATTATTGCAAATTTCTTGCCAC

Gene Sequence:

>Vu_37216(-)