Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_37093	LG11	32484905	32485513	PREDICTED: dehydration-responsive element-binding protein 3-like	Map

Annotations

category		relationship type		keyword
Pathway		B 09182 Protein families: genetic information processing		C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
G/C	32484946	missense_variant	p.Gln190Glu
A/G	32484949	missense_variant	p.Ser189Pro
A/G	32485141	missense_variant	p.Ser125Pro
G/A,*	32485161	missense_variant	p.Ala118Val
G/A	32485164	missense_variant	p.Ala117Val
G/C	32485178	synonymous_variant	p.Ala112Ala
G/T	32485271	synonymous_variant	p.Leu81Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_37093.1

MTQTTISSTLSSPSSHSGPKAHARAKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPLTCSPRDIQAAATAAASMSKFDSVTQTSDSETETSEESELSEIVELPNIEDSFDSSVDSFVMVDVVDSWMFPPLDSFCAAFSDELFSQQCCSETLLPIWD*

CDS Sequence:
>Vu_37093.1

ATGACACAAACAACAATCTCTTCTACGTTGTCGTCACCGTCCTCGCATTCGGGTCCAAAGGCTCATGCCCGGGCCAAGAGGCCCAGAGACTGCAGCAAGCACCCGGTGTACCACGGCGTACGGAAGCGCAATTGGGGCAAATGGGTCTCGGAAATCCGCGAACCGCGCAAGAAGTCTCGCATCTGGCTCGGAACCTTCGCCACCCCGGAAATGGCGGCGCGGGCCCATGACGTGGCGGCGCTCACCATCAAAGGCCAATCCGCAATCCTCAACTTCCCGGAAATCGCGGACCTGCTCCCCCGCCCCCTCACGTGCTCCCCACGCGACATTCAAGCCGCCGCCACCGCCGCCGCCTCCATGTCTAAATTCGACTCCGTAACACAAACCTCGGACTCGGAAACAGAAACTTCCGAAGAATCCGAACTGAGCGAGATAGTGGAGCTTCCGAACATCGAAGACAGCTTTGACTCGTCCGTTGACTCGTTCGTGATGGTCGACGTGGTGGACAGTTGGATGTTTCCGCCATTGGACTCGTTCTGCGCGGCCTTTTCCGATGAGTTGTTTTCGCAACAGTGTTGTTCTGAAACGCTATTACCCATTTGGGATTGA

Promoter Sequence:
>Vu_37093::LG11:32485513-32487513(-)

ATCAGAATTAACTCTTTATGTAATTAATGGATTGGATGACGTAAACTGATGAATTTGTACAGTAGACGATACTTCAGATTGGAACATTGACTATATCTTATCATATTAAGATCTGGGTTAAAATAGTATTAATCCAGAATTTAGATTAAGTTTAATTATGTTATATCTTTCTATTCATCTAATAGTAAAAATGGGGAATGGACAAAAGAAAAAACAAATTGATCATAAGGGCAACGGGCACAAGAAAGTTGAGATGTGGGCTAAGGAGACTTAGCCAAATGTTGTAGTGAACGTTAAAGCTACAATGTCGGTGTGGGACCTCTTTGTACCCGTAGTGTCTCCTTTCTCCAATCCATTATCTACACCTATGTGAACCAGTACTTGTCAAATTAAATATTCCACACCCAAATTTCTTATTTTTTTCTAACAACTTCCATTCCATTCCATTAAACAGTTTCTTAATAACTTTCAGATCAGAGAAACGGGCTTCTCGATAGTCTCTGTCTTTGTCTTTTTCTATTGCTTAAATGAGTTTGGTAATAAATGAAGTGAGATAAGCAGTGCAACTTTTTCATTTTAAAAACAGGTAACTGGTAGAGTGATTCTTTTTCGTTTCTGACCATGCTTTCTTCCAATTGGTGTGATGAGCATTAGTTCAGAAATCTTGTATCTTATTTACTACTACATATTAGTTTTAGTCAACAGTTAATTCTGCATACAGCAACTTGGTTTATTTTAGACGGATAAAAGAAACTCCAAACCCCATTTAGCCATATCCATCTAGAACACGTTAGGTTGCTCCGGCTTGGACAAATTGTCAGTATTTTTTTGCCATTAGGTTTCAATATAGTGTAGAAAAACTTTACTATTTAGATTACATTTATTTCGGACGTAGATAGAGGATTTTCGCAAATATTTTTTCACATTTCTTTTCAAGTTAGCTTAAATCATTCTCAACATCTTTAATTGTTGTTTTTTTGTCTAAGTTCTAAACCGTCTAAGTGTAAGTGACAAAAATACTTTGATGCTCAAGTTAATAATTAATTTAATCGAGATCACAATAAAATTTTAAACTCATAATAAACACAATCAGCTACTTTTTTACCTTCGATCTCTATTTATAAGTTTCATAATAGGTTTGTGATTAGTGGAATCCTAATTATGACTCAATCACGACCTATTTTTTACTAAGTAATCTTGATTAGGAGGACGTTTAGGAGTTCCTATTGTTGGGGCCGTTCGATCTCTCTGTCTCTGATTTTCATGACAATACGATCAACTAATATTGATCGAATAGTATTTGATGATGTTGAGTGCAGTTCATTCAAACCGACCGTTCCCTCTCGTGATTGAATCGACCGATCATTCTATAAATCTTTATTGACATATAGTACAACATTATCTTTCATTTTCTTTTTCACACACTAATAATACATGTTTGAAAAGAAAAAAAACAGCCAAAAAACGAAAGATAAAACAAGACAAAAAGAAGTCACTATTTTCACTCTAAATACGTCTAAAACGTTATAAATGTACTTTTATATTAGTCTCGCCAATAAAAGATAGACCTACTAAGCTAGTTATTAATAGAGAGAACATCAAATCCATTCACTTATGTCGGAAACAAATACGAGAAAGAGAAGAATTTTAAGATTGTAATTAGTGTTAATAAAAAACTAATAGAATTGAATTTAAATTGTTGTAACGGAGTTTAGCATGTAATAACGTTTTGATGTATGATATTTTTGGGTGGATGGTTAAAAAAGTGAACCAAGTGTGTGAAATATATAATTGGTAGGTCAAGGGTCGCTGTAAGAGAGCGTATTATTCACTACGAAAGGCTTACGCCATGTATGGTGTGTCCTCATTCCGCTTCACTTTCTTCCAACCATGCCCCTATGCTATACGTTAGAGTCTTGATCTTTACACTTCTCTCTATATGTATATGTATCTATCTGTTTGCCAAACCAGACATTCATTCCCACTCTTGAGTTTCAACA

Gene Sequence:

>Vu_37093(-)