Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_37088 LG11 32455080 32456260 PREDICTED: GATA transcription factor 9-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 32455116 missense_variant p.Ala13Ser
C/T 32455160 synonymous_variant p.His27His
C/T 32455162 missense_variant p.Ala28Val
T/C 32455174 missense_variant p.Ile32Thr
G/A 32455176 missense_variant p.Gly33Ser
C/T 32455203 missense_variant p.Leu42Phe
C/T 32455205 synonymous_variant p.Leu42Leu
C/G 32455225 missense_variant p.Ala49Gly
G/A 32455236 missense_variant p.Asp53Asn
G/A 32455240 missense_variant p.Gly54Asp
C/T 32455258 missense_variant p.Ala60Val
C/T 32455291 missense_variant p.Ala71Val
A/G 32455313 synonymous_variant p.Ser78Ser
C/T 32455318 missense_variant p.Ser80Leu
T/G 32455341 missense_variant p.Ser88Ala
T/C 32455409 splice_region_variant&intron_variant
T/C 32455414 intron_variant
A/T 32455419 intron_variant
A/G 32455460 intron_variant
G/C 32455558 synonymous_variant p.Leu115Leu
G/A 32455741 synonymous_variant p.Pro176Pro
G/T 32455987 synonymous_variant p.Thr258Thr
G/T 32456023 synonymous_variant p.Gly270Gly
T/C 32456209 synonymous_variant p.His332His
C/T 32456218 synonymous_variant p.His335His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_37088.1
MEAPEYFVGGYFAAGGADQFTQQDKRHADQKIGESFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFASAIVPRGYAGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAASTAIGAKPQTPESSSSTDTLPPFASDETARNAPFLHTETPLPGKARSKRSRAAPGDWSTRLLRLVAPEQERPPQAKDSPVKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKEMHRQQHQQLMSQSSIFGVSNGGDEFLIHHHHHHQHCGPDFRHVI*


CDS Sequence:
>Vu_37088.1
ATGGAAGCGCCGGAATACTTCGTCGGAGGCTATTTTGCGGCCGGAGGAGCTGACCAATTCACTCAGCAGGATAAGCGCCACGCTGACCAGAAAATCGGTGAGTCTTTCGCCATTGATGACCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTAGCCGGGAACTCCACTGACTCCTCCACCGTCACTGCTGTTGACAGCTGCAACTCCTCAATTTCGGGCAGCGACAACCGCTTCGCCTCAGCCATTGTCCCTCGCGGCTACGCCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTACGATGATATGGCGGAACTGGAATGGCTCTCGAACTTCGTTGAGGACTCGTTCTCCGCCGAGGAGGAGTTGAAAACGCTGCAGCTACTGTCCGGCGCAGCTGCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCAGAGTCCTCGTCCTCCACCGACACGCTGCCGCCGTTCGCTTCCGACGAAACCGCTCGAAACGCACCGTTTCTCCACACGGAGACGCCTCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACACGCCTGCTTCGCCTGGTGGCACCGGAGCAAGAGAGGCCGCCGCAGGCGAAGGATTCACCGGTGAAGAAGAGAGAGGGAACGAATGCAGAGTGTTCCGGAAGGAAATGCCTGCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGACCGATGGGACCGAAGACGCTGTGCAACGCATGCGGCGTGAGGTTCAAGTCCGGGCGGCTGGTTCCGGAGTACAGGCCGGCGGCGAGCCCGACATTCGTGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGATGCATCGACAGCAGCATCAGCAATTGATGAGTCAGAGTTCAATTTTCGGCGTATCAAACGGTGGAGACGAGTTCTTGATCCATCATCATCACCACCATCAGCACTGTGGGCCAGATTTTAGACACGTTATTTAG


Promoter Sequence:
>Vu_37088::LG11:32453080-32455080(+)
TTATAGAAGGACAAATAAGGTATGGGGAGGTGCAGGCAGCGGTTGGTGGTGGTGGAGGGAGCAACTCTCTTAAGTTTATACAGCAAACAAAATCTCTTGGCCCATTATTGTTTATACAGAACTGACAGTGTGAGGTGCACGTGGTAGCATGTTAGGAAAAGGACACGTGTGAGAGACGCACGTGTGGAATGAAGGATGGATTAGAGGTTGGAAGCAAGCGAAGCTTGATTGAGAAGGTTCATACTCAAACCGAGTCACATGATCGCTGACACACACACACATCTTTTCTTCCTTTCTCGCGTGCTCCCTGCATATCTCTCTATTTTTCTATTTCGAAACCACAGCAATAAAGAGACTTAGAAATGAAATTATGTTTTCTTTTTGAGTTTTGGTTAAAATATTGAAGAAGCGATGAGAAGGGTGATAGAAGTAGTAACAGTAACAGTGTAAGCAAAAGCAAAAGCAAACCTTATCCACGAGTTATTACCGAGTCTGAGGGTTGTTGATTAACCTGGGGATCAGAGTCAGGCCCATCTGACTCAATCCTTGTTTTATCTCAATCTATATAATATCCCAATAATGAGGTAAAATGCCCTCCAAAACACCAGCACCCACATGATTTTACATGAACATGTTTTTGAATTTGGAGAAGTCGGTACAAGAGGTGTTTGCAAAAATGCCAAAACCAAACCTCACATGTCACATGAAAACCTAAGCAAAGCTTGTATATTGATTGTTGAAATGTGAGGAAGTTAAAAGAGTGATGAAGTTAAAAATGGTGGATGAGATGATGATGATGATGATGGAGGATTAAGTTGAGCTGTAAGCGTCGTGCAGAAACGTGAGAAGAGGAATATAAAAAGAGAAGATGATAGGGCAAGAGGGGTAGAAAGTACAATTAATTGAAGTAAACAAATGTGAGAAATCAGAATGAAATGAATAAACTAAAACTTGGCACGTCTCACGAAGTAATAATATTATTAGCAGCAGAGGAATCCGGCTGTAAACTTGGACACTATTGGAGGACTCACTGCGACAAAACCTGCAAGAGATCGATTCTTTCAGGGGTTGAATTTCATCACCATTAAATTCTTCTACCCTATTAATCATTGTTAATTACCACATTAATCATCCAATAATTTACATTAAGCTCTCTCTCTCTGCCCACTGCTTTTACTTTATGCCCAAAATTAGTGCCTAATACTGACACGTTGAGAAAAGTGACCAGTGTGTGTCTGTGGCCATAGCTGTTTTCTCTCCCAGTGACACCCCACCATTCTGCTTCTTCTCAACACTGATTCCTCAAGAACCACATGATCTTTATTCATTGCATCAACTCATCCTTCTTCCTTTTCCCCTTCGAGATTTTTTTTAAATTTCTTACTCATATGGATGAAATAACGATATTTACGTTCAGTTATATATTTTAAATTGATGTTATCTTTATTTAATATAAAATTTTATACGACTAATAATTAAGAGAAGAAAAAAAGAGATATAAAGTAACTCATTGTTTTCCTACTAAGATAGAAGGGTACAGAATACACATGCCAACTACTTGAGTTCATAAGGGAATTTGAAATGTAGAAGGAAGTTAGGGAATGAGGTGTTTGTTTGAGAATATTAAGACAATGGGAGAAAGTAAAAAGGGGAAACGGAAAAGAAAATGTGGTTTGCAAAATAAAGGGAAAGAAAATGAAAGTGGATTAATTAAACTTTACAGAACTTGGAAGTCACTTCCTGTTGATTTTTAGTTTTTAATTATTAAAAATATTAAAATATTGAAATTGTGTGCATGAAAAAAGATGCTCCAGTGTGTGAGAAATTACGGGGTTGCCACTCCTTTACTCCTCAAAACCCCACCATCACTCCCACACACCCCTCAGACTCTCGGACACACCAAACGGATCTCCTGTCAAAACGGTGCGTTCGCTCTCTTTAAAACAAACACCAACTACTCTTTCTCTCTCTCACTTTCTCCCACTAAAACACTATCTATA


Gene Sequence:
>Vu_37088(+)
ATGGAAGCGCCGGAATACTTCGTCGGAGGCTATTTTGCGGCCGGAGGAGCTGACCAATTCACTCAGCAGGATAAGCGCCACGCTGACCAGAAAATCGGTGAGTCTTTCGCCATTGATGACCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTAGCCGGGAACTCCACTGACTCCTCCACCGTCACTGCTGTTGACAGCTGCAACTCCTCAATTTCGGGCAGCGACAACCGCTTCGCCTCAGCCATTGTCCCTCGCGGCTACGCCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGGTGAGTAATTTTCCGAGCTAAACCACGGGATGATGAAATAAACAGATAATTGTGATAATTCGAGTTAGTTTAATAAATTAAATTCGTTTGTTGTTTTTGAAATTGAGTTTTCTCTTCTCGTAATTTTGTGACAGTACGATGATATGGCGGAACTGGAATGGCTCTCGAACTTCGTTGAGGACTCGTTCTCCGCCGAGGAGGAGTTGAAAACGCTGCAGCTACTGTCCGGCGCAGCTGCGTCCACCGCCATTGGCGCGAAACCGCAGACGCCAGAGTCCTCGTCCTCCACCGACACGCTGCCGCCGTTCGCTTCCGACGAAACCGCTCGAAACGCACCGTTTCTCCACACGGAGACGCCTCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGCGCGGCGCCGGGGGACTGGTCCACACGCCTGCTTCGCCTGGTGGCACCGGAGCAAGAGAGGCCGCCGCAGGCGAAGGATTCACCGGTGAAGAAGAGAGAGGGAACGAATGCAGAGTGTTCCGGAAGGAAATGCCTGCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGACCGATGGGACCGAAGACGCTGTGCAACGCATGCGGCGTGAGGTTCAAGTCCGGGCGGCTGGTTCCGGAGTACAGGCCGGCGGCGAGCCCGACATTCGTGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGATGCATCGACAGCAGCATCAGCAATTGATGAGTCAGAGTTCAATTTTCGGCGTATCAAACGGTGGAGACGAGTTCTTGATCCATCATCATCACCACCATCAGCACTGTGGGCCAGATTTTAGACACGTTATTTAG