Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36942 LG11 30913358 30914572 PREDICTED: transcription factor WER-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   growth, defense response to other organism, defense response to other organism, response to auxin, defense response to other organism, response to auxin
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 30913461 missense_variant p.Ile228Leu
A/G 30913983 downstream_gene_variant
G/T 30914001 downstream_gene_variant
G/A 30914045 downstream_gene_variant
A/T 30914057 downstream_gene_variant
G/A 30914179 missense_variant p.Ala56Val
A/G 30914433 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36942.1
MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHGTPSLSVSSPEHKRHEEEKIKQVHVAPEAPRPRRVSAVEYSKIVENNRCSPSNKVEGSSDEASLSDFLIDIDQSHLLIGDDSNSKVPQMEEEHNNKQVGLTNSPSSSSPSDHCHHLLAEKFDPLETLLDVELKRMASFLGLEND*


CDS Sequence:
>Vu_36942.1
ATGGGAAGAAGACCATGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGACGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATATCAGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATCTGTCAAAGAAGTTACAGAAACATGGTACACCATCATTATCTGTTTCTTCACCTGAACACAAACGTCATGAAGAAGAGAAGATCAAGCAAGTTCATGTCGCACCGGAAGCTCCACGCCCTAGGAGAGTCAGTGCAGTTGAATACAGTAAAATTGTGGAAAATAATAGGTGTAGTCCCTCAAATAAAGTGGAGGGTAGTAGTGATGAAGCTTCTTTGAGTGATTTCCTGATCGATATTGATCAAAGCCATTTGTTGATTGGTGATGATTCAAACTCAAAGGTCCCACAAATGGAGGAAGAGCACAACAACAAACAGGTAGGCTTAACCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGGCAGAGAAATTTGACCCTCTGGAGACCCTCTTGGATGTTGAACTCAAGAGAATGGCTTCCTTTCTTGGACTTGAAAATGATTGA


Promoter Sequence:
>Vu_36942::LG11:30914572-30916572(-)
ACATACTTTTTAATTATTAGAATACTTTTAATTAGAGTTCAATTAACTTATCTTAAATTTAGTATTGACTTATTATCTTAAACACCACCGTAATTTTTAAATGACTTCAAGAAAAATACTAAAAGGAGTAGGTCAAATTTTTAATATCTTAAAGACCCATGGATCTTTCTAAACCCGTAAGAGCTTTATTGGTTCATGTGGGCAAGAGTTTATTTATATTAGACATTTTTTACAACTCTAAATTATGTAGATTGTTTCACTTTGTAACTTCAATCATTTCATTATGTATTTTCAATTTCAAAAAATAGTCTCAGAGGTTACATTTTTTATCATCGAGTTTTAAAATTCAGTGAATGATTTTTTCTTTATTGAATTTCGAAATCCGATGAAAGATTTTGTCTTAATTGGATTTCGAAATCCGATGAAAGTTTTTCAAGATCTCAATGAATTTCAAAATTCGACGAAAAGAATGAAAAATTCTTATCAGATTTTGAAATTCGATGAAAAAAAAATTATTCATCGAATTTTGAAATTGGATAAGCCTTGAAAATCCTTCATCGAATTTCGAAATCTGAAGAAAGAAAATCTTTATTGGATTAAGCAAAAAAATGGGATATAGGATTTTTTGAATTGTAGAGAAGAATTTTAAAATTTTAAAAAAATTTGGTAGTACAAAATAAAATATGTGATAACATTACTTTTAGAGTTTATCTAGATTGACTGTATTATATGTCTTTACTTGATATAAGGATGGAGATTATATGAATGGTTGGATAATAACCTAAGTTGATCCATATACAATAAGATGATAAAAGGGATGCCACCTTCAATCGAGTGTCAAAAAGAAAGCACCACACTTTTATATGCAAATGTGAAATGTGAAAAAGTTGATATGAATAAGATCCATATACTAAAGCCAATATACAAATTCAATTGTTAAAAAATTATGGTGGAAAGAATAATTTGATTGTTTAGTTATTTCTCACATATCTTTAAAAGAGGGTGTGTTTGGTCCTTAGTTTAAAGTACCCATTAATGAGGTTTCTACATATGGAAGAGTTGATTGTGTCACAGGTCACAACCTCCAAAAGGTTTCTCCATATTGCATACATGAAATTCATGGTTGGTAATGGTCCATCAGTTGTTGAATGGTCCCCTTTGAAGTACACCATTGCTCTCTCCCTTTAATATTAATCATTCATTCTTTTCCTCCTAACTCTATTTCTTAGACAATTTAAAATTAATGCAAACTCCATGATCAAATATTTAATTAATATTTTATCACTCTCATTTTTATTTCTCATTCAATGTATTTATTATGTATATTTTAAAATTTAATAATCGATTATTATACTAACTCTTTTGTTGGTGTTTAACCAAAATATTCAATCCTATAAATGATTTAGAAATTTATTCATGTACACATAGAGAGACAACAAAAATAATAAATAAATATGTTGGATGATGTGATGAGAAGAAAGACATAAAAAGAAAAAACAAATATATAATAGATATAGACAAAATAAACATGTATGTGTATCATTATTCAATGATTAACTATTGTTGTACATTTACATCTCTCTCTACATATATACCTATGACACTATATTTCAAATATGATTTTTGAAAAATAACTTATACTTATGCTTTAAAGTAATAAAGAATTTAAAACAAAAATATTTTAAAAGTAGCAAATAATATAGTTATGACAAATTGTTATTGCAGCTATAAACAAAAATATAGGAAAAAACAATATTAATAGTGAGTACTACCAGTACTTTAAATTTATAGAATTGTATCAATAGATAGTTGTGGAAAGAAAAGAGACAAGACTAGCATTTCAGTAGCTACGGAATATTGAAAGTACAACATGTTTCCTAAGATAACCTAATCATATTTGTAATAATAAGACTGATGTTTTATGCGTGCCAGGTGTTAATCTGAGTGCAATATGAAAGTATAGATTGTGTGTGTAGTGAGAAGGAACATTGTTGAAGAAA


Gene Sequence:
>Vu_36942(-)
ATGGGAAGAAGACCATGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGACGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTATCCACATTCACATCATTCTCATAGAAATTCATTGTAAAAATCTGTAGTCTAAGAAGCAATTGATTTGGTGAATGAATGTTCAAGTTGGAAGCTGGTTTTGTTTATTTTGCATGATACCTCACAGAACAATCGTGTGTTTCTTTGACCTGAAATCATGGTTTTGTTTATTCTAGACATTGGCATTTTGTTGTATATATATACAAATCACAGTGATGTCTGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATATCAGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGGTGCTTTTTATTTATTGTCTTTTAACTTATTTTCAAAAGATCCCATGAGTATTATCATAAACAGCACCATTTTCAATCAATTTTGACGGCAGTTTTTTAAAATATAAGAGTATAAAACTGTAACAAAGTCTAAAGTAAAGAAAGAAAACTGGTACATGAATTACTTGGTTGTAAAGCATAGTGGTTTTTATCTTTATGCAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATCTGTCAAAGAAGTTACAGAAACATGGTACACCATCATTATCTGTTTCTTCACCTGAACACAAACGTCATGAAGAAGAGAAGATCAAGCAAGTTCATGTCGCACCGGAAGCTCCACGCCCTAGGAGAGTCAGTGCAGTTGAATACAGTAAAATTGTGGAAAATAATAGGTGTAGTCCCTCAAATAAAGTGGAGGGTAGTAGTGATGAAGCTTCTTTGAGTGATTTCCTGATCGATATTGATCAAAGCCATTTGTTGATTGGTGATGATTCAAACTCAAAGGTCCCACAAATGGAGGAAGAGCACAACAACAAACAGGTAGGCTTAACCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGGCAGAGAAATTTGACCCTCTGGAGACCCTCTTGGATGTTGAACTCAAGAGAATGGCTTCCTTTCTTGGACTTGAAAATGATTGA