Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_36929	LG11	30782322	30783941	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity, sequence-specific DNA binding

SNP	Position	Effect	Amino acid change
G/A	30782496	synonymous_variant	p.Gly482Gly
C/T	30782532	synonymous_variant	p.Arg470Arg
C/A	30782664	missense_variant	p.Lys426Asn
C/G	30783504	missense_variant	p.Lys146Asn
G/A	30783537	synonymous_variant	p.Gly135Gly
T/A	30783601	missense_variant	p.Glu114Val
C/T	30783619	missense_variant	p.Ser108Asn
T/A	30783697	missense_variant	p.Asp82Val
T/C	30783846	synonymous_variant	p.Pro32Pro
C/G	30783884	missense_variant	p.Val20Leu
C/T	30783918	synonymous_variant	p.Thr8Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_36929.1

MIMEPNPTSDHSLDWFEGSVSFFPLPPFLDDPYNCSDIQLWDQDISSHYQTDANTSSPNATNIATTTTPPEPCASNNLPLSDLPKKRSATDDSSLGQPQNHKHKKIKSKPLNNEADSGDAEGTTTVRKPGGNKKGAAKGVANNCNKKEGRWAEQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLASTSTGYMTFASTEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTEIDTPFSIGPPGDNFSSRLLGFAQLMNVNLQIKRLDNCPLQTLSAQSVDTSPDEIFVVCAQFRLHQLSHNSTDEKSEFLKVLRNMEPKGVILSDNNMECCCSGCGDFAMGFSRRVEYLWKFLDSTSSAFKGRDSDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDTNWEMKVEDDNRSVGLWWKGQPVSFCTLWKLDGNDQSSTFTS*

CDS Sequence:
>Vu_36929.1

ATGATCATGGAACCAAATCCAACGTCAGATCATAGTTTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCTCCATTCTTAGACGATCCATATAACTGTAGTGACATCCAACTGTGGGATCAAGACATAAGCAGCCATTATCAAACTGATGCTAATACCAGTTCCCCTAATGCCACCAACATTGCAACTACCACAACACCCCCTGAGCCTTGTGCTTCTAACAACCTTCCACTCTCTGATTTGCCCAAGAAAAGAAGTGCCACTGATGATTCAAGTCTCGGACAACCACAGAACCACAAGCACAAGAAAATCAAGAGCAAACCATTGAATAATGAAGCAGATAGTGGAGACGCAGAAGGGACAACCACAGTTAGAAAACCTGGTGGGAACAAGAAAGGCGCTGCTAAGGGTGTGGCAAATAACTGCAACAAGAAGGAAGGAAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGACCCGTGTGCAACACCTCTTGTATGTTCTCCATGAGTTAGCTTCACCTACGGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTGACACACCACTTATCGTCTTCTCTAGCATCTACCTCTACAGGGTACATGACTTTTGCATCTACTGAGCCACGGTTCTTTCAAAAGACACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCAAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGGGAAGACAATGACAATTCGCGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGCATGCAATGGCCAACATTTCTAGAGGCCTTGAGTCGCAGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACTGTTGTCACGGCTTCTTCCACTGAAATTGACACCCCATTTTCTATTGGTCCTCCCGGTGACAACTTCTCATCTAGATTACTTGGTTTTGCTCAGTTAATGAACGTGAATTTGCAGATTAAAAGGCTAGATAATTGTCCATTACAGACACTGAGCGCTCAAAGTGTTGACACCTCCCCGGATGAAATCTTTGTTGTTTGTGCGCAGTTTAGGCTGCATCAGTTAAGTCACAATAGCACTGATGAAAAGAGTGAGTTTCTGAAAGTGCTGAGGAACATGGAGCCCAAAGGGGTGATACTAAGTGATAACAACATGGAATGTTGTTGCAGTGGTTGTGGGGATTTTGCCATGGGGTTCTCTCGAAGGGTGGAGTACTTGTGGAAGTTTTTGGACTCGACAAGCTCAGCGTTTAAGGGTCGTGACAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCAGCAAAGGCATTGACAAACCAGCGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGGATGAAAGAAGCCGGGTTTGTGGGGGAAGTACTTGGCGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATACTAATTGGGAGATGAAAGTTGAAGATGACAATAGAAGTGTAGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGCACCTTGTGGAAGCTGGATGGGAATGATCAGAGCTCAACATTCACATCATGA

Promoter Sequence:
>Vu_36929::LG11:30783941-30785941(-)

AGTTAAGTCCAAGATACCAATAAAGAATAATAAGAAACTAACTAAAGATAAAAGATAAAAATAAGATATATGTCTAAGATATCTAATAATAATCCATCTAACAGAAGACATATCTAACCCAATTAGATTTATTTTATAAAAACAAGCTCATTATTTTCATAATATAATAAAATTAATTCTAATAAATCTCTAGATAATATATTTTATCTTAATATTTTTATTCTAATTGGTTATGATAAGGTCTTAAATAATACATTTTATTTTCTTATTATTATCTAATAATAATATCTAATAATATGATATCTCAAAATATTTTTTAATTTGTAAATATATCGAGTATATAATAATATCTAAGAATATCTTTTAAAATATCTAATAATATATCTAATAATATATGATAGTAATTTTTCTTCACCAAACCTTAATTTTTAGAAAATCCTTTAAAATAAATCCTTTAAATAAAAATAACAAACTATTTTATCTTTTATTTAAAATAGTTAATCACATTTATATATTTTTCTAATTATTAAAATGTATAGAATCCCAGACCCTATAAAAACAAATTTCATCTCCTAAAATATACAAAAAAATGAAAATATCTTATTCTTATATTTTCATATGATAAAACCTAACAGAAATACTTAAAATTATAATAAACAACTCTAACCAACTGAAGTACTGTTCACTCTTATAATAATTATATTTTCTTATTTTAAATAAAAATTCTTATAACTATAATAATTTTCAAATATTTAATTTTCCTTAAGTCTTACACAAAACATTATTTAAAGATTCCATTTAAAAAAAAATGCAAGATGCGTAGTTTATTTAATCAGGCATATTTAAATTTCATACGATTTTAGTACCTGTTTGTATATTTATTTTATAATAATAATTTTACAGATTTAAATGTATTTATCAAACTGTGCAATTTTGACTCAAGGTCCTCAATCTACCAATGTGTATGCGAATATTTAAACAATAGTTAAACTTTCTATGTAAGTGTTATTTCTCTTCCTCGATCGCATTACTGAAAAGGATTTGTCTTATCGTGGTATTTTTAAATGCACACTTTATTTTTATTTCGGACGTTACTTTTAACACGGCATCAGGTTCTTGTTATTTACGCCAAATCGTCGTTTTAGAGAATAATTAATATTTTTATGATCATATTTGATACTTTTTAGCGACCAAACTACATTCCCAGATATTTCTATTAATATATATATATATTAATAATAAGAATAGTATTAGCAGTAGTGATAGTAAGATTAATATTGATAATAATCTCAAAGCAATCAATCATGTTCCAGTTAATCAAACAGAACTAGAATAAGAGAAAATTGGAGTTCTGGACTGAGACATGCAGAGTTTTAAGAAGATGCAACTACAAATTTTCCTTTGCATGGTATCGATTGGAGAGAGTGAGTGAATCAGTAACAGAGAGAAAGTAGAGTTGGAGAAGATGACTGAAAAAAGGAAAACAGATAAGAACAAAATACAGCACAAAAAGTTGCTAAGGCATTGCCAGATACAAACTTTTCACCAAATTTCAATTAGTCAAACAGTATGTGCCGGCCAGAGTTTTGGATGAACCTATCACAATCCTCAAACTCATTGAAATTCCTTAATTAAATCAAAAACAGTAAGCAGATTTCATTCGCCATATAATACAAAGGAACAAGTTAACCACCCAACATAAAGAAGAGACATTATCGTCTCCTAGTTGCCTATGTAACCAATATTAAACATCAATAAAACATCACATCTTCCAAACGAACAGCACACAAACAATTAGAAAATTCCCTTATTTGTCACCACTAGGAAGCATCACTGCACCATGCTTTATTTTTAAATTCTTTAGGAAAAACTTGTGAGACTTTATGGCTCATATGTCCTATACCCTCCTCCTATCTTTTAGTCAATGATCATACAGTACTAAGCTTTCAAAACCCTTTTCAATCTTTGCTCAATATCTCACAACAGCCCCTCCCATTACA

Gene Sequence:

>Vu_36929(-)