Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36782 LG11 29151504 29153344 PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 29151535 missense_variant p.Arg301Ser
C/A 29151536 missense_variant p.Arg301Ile
C/G 29152290 upstream_gene_variant
A/G 29152438 splice_donor_variant&intron_variant
G/T 29152448 missense_variant p.Pro183His
A/G 29152485 missense_variant p.Ser171Pro
A/T 29152487 missense_variant p.Val170Asp
C/T 29152489 missense_variant p.Met169Ile
G/A 29152516 synonymous_variant p.Gly160Gly
T/A 29152523 missense_variant p.Asp158Val
T/A 29152755 upstream_gene_variant
G/A 29153008 stop_gained p.Gln75*
T/A 29153010 missense_variant p.Lys74Ile
A/T 29153183 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36782.1
MDVIGFGFRPTEEELVDYYLRHRLLGDDPRVHVIPDIDLCEVEPWDVPMLLAESAVPFDLPEWFFFSPVDFKYSNSKRINRTTKCGFWKPTGKDREIRRSDSNTLIAKKKTLVYYKGRVPRGEKSNFVIHEYHAVTFHESQRTFVLCRLMKKPGGTTEDGGDEGESSRIMVSGYENQSIAGGIPSVRKYIYWNGNDLTARRNEEEFLNSIFVHEGYVNNEQNINTFYNTFTQSESLRKVYRESSDTDAEAVSEQGDNITNIPTVFSRYLNVNEYHSSKGFDSELSDVDVEEGVGSEGFSHCESEEKSEKGSKY*


CDS Sequence:
>Vu_36782.1
ATGGATGTTATAGGATTTGGTTTCAGACCCACAGAAGAAGAACTTGTCGACTATTACCTCAGACACAGGTTGCTGGGTGATGATCCACGAGTCCACGTCATCCCCGACATCGACCTCTGTGAAGTGGAACCTTGGGACGTACCAATGTTATTAGCGGAGTCAGCTGTACCATTCGATCTCCCGGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAACAGTAAAAGGATTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACCGGAAAAGATCGTGAGATTAGGAGGTCCGACTCCAACACTCTCATTGCCAAAAAAAAGACTCTCGTTTACTACAAAGGCCGCGTTCCACGTGGTGAGAAGTCCAACTTTGTTATTCATGAATACCATGCTGTTACCTTTCACGAAAGCCAGAGGACTTTCGTTTTGTGTCGCTTGATGAAGAAACCTGGGGGAACAACTGAAGATGGAGGCGATGAAGGGGAGAGCAGTAGAATCATGGTTTCTGGCTATGAGAATCAGTCAATAGCAGGAGGCATTCCTTCGGTAAGGAAGTACATCTACTGGAATGGAAACGACCTTACAGCAAGACGAAACGAAGAGGAATTCCTGAATTCTATTTTTGTTCACGAGGGTTATGTTAACAATGAACAAAATATAAATACCTTCTACAATACATTCACCCAATCGGAGTCATTGAGAAAGGTATACCGTGAAAGTAGTGATACGGATGCTGAGGCCGTCTCCGAACAGGGTGATAATATTACGAATATTCCAACAGTGTTTAGTAGATATCTTAACGTAAACGAATACCATTCATCAAAAGGGTTTGATTCTGAATTATCAGACGTGGATGTCGAGGAAGGTGTAGGCTCGGAAGGATTTTCTCATTGTGAATCAGAAGAAAAATCAGAAAAAGGCTCAAAATACTAG


Promoter Sequence:
>Vu_36782::LG11:29153344-29155344(-)
AGGTGATGAAGGGATGAAGGGATGAAGGGATTGAACACACTTCTGCATCCCATCGCGGCTTCCCACTTCTGCTTTCCTGTGCTCCACAATGTCCAGAAAAAAAAATGCTTCCCTGTACTCCACGATGTGGCAAAAATAAAAAAAATAAAAAAAATATTTTACTGCCTCGGTTCAGGTTTAAACTGAGACAATATAAGTCAAGATACTAACTCGGTTGTAAACCGAGGCATAAAAAGAAGACTTTTTACCTCGTTCGTATATGCCTCGGTTTCTAAACCGGGGCCTATGACCAAAAATAACCGAGGCCATTTGTTTCTCCTGTACTAGTGTTACACTTATTTTATATATTAGTAAAAACTTTTTTAATAATTGTCTTTTTTTACATAATATCTTGTTATTTTACTTTGCAGCTGTTTGTTTTTATATATTTACTGATAAGAAGGAGATATAAAGATGATATATAGTAATAAAAGTAAAAAGACGAAAATTTGAAATTTTTAGAGAAAAATTAAAAGTGACTGTAATGTTTTCTTTGCTCTTTGCTCTTTGCATATTTTTTTTCTGTGATTGTAATGATAGAGTTTTTAACGAAACTCAAAAATAAAATAGTTATTTTGACAATTAATTATATTAATATTTTAATTATATATGTTTTATATTTTAAAGTAAATTATCGATATATAGTCCACCCTGCATAGTCCAATGGTGTGTATAAAGCAAAAGCGTGTAGAACAATAGAATTTGTCATTTATTTTCTTTCTATTTTAAGAAGGCAGGAGTGCATAGCACGCACTATGGGCAATTGCTGGTTTTATCTTCAATATTAAACTTATGATGATAATAGCTAATGTTAATGTTAAAAATAACTATTTTTAAAAGAAAATAAAATCAGAATTTGATAAATTTACATGGGACAAAAATAAAAGGGTTTGAACTTCAGAGATATGAAATTGAAAGTTATGTTTTTATTTATATTCTTATTTTTTCATGCCTAATAAAATACTAGAGTAAGCTGACATCAAACTATTGAGTTCAGTAGTGCTGGGAACATCACTTAGAAGTTCTAAGTTTGCATCACTCTACTCAAATCTTGAAAATGTTATCAAACTTTGTGACCAAGTTCTTAGTAAAGGGAAACATAACAATAAACCACCAAAAGAAAAGCAAAAGTGGCCATATATAATTAAACAATTTTCCGTTTATTTTTTGTTGTTGGAAGAGCAATGAATTGAAATGATTGGTGGAAGAAAGAATCTTCGGGATCGAGACTCAAATAATAAACCACAAATCATAGAGTTAACATTAGTTTATATATTAAAATTTTAATTGTAATATAAGTTAATTTTAATAACGTCTATTTTTTTTTCTCTTTTAAAATTGTTTAATGGAAATTTCGAGCACAAATCTACTCTAATATTAACCACAAAGGGTATAAAATTTGTATTTAGATTTAAAAAAAAATATTTATTAGAAAGTGACATGTGGGCAGAAGTTTCTTGTTCTTAACTTCTTCATATTCTTTACCATATAAATTATGTACCGAATATATAAATATATATATATATATATATATGGAAAATCAGCATGCAAAAATATATTGTTCTTAAAGAGCCAAGTAATACAGTGAGGTGAAAATTTAAATGTCTCCTGAAATCCAAACATAATATTTGTCTTGGGGTTATTAAGATATTGTTGATTGTTATTATATTTAACCTCTAGAATGTTCGGTTTTCATTTGTTACATACGATATCATATATTCTTCCACACAATAAGGTAACACTTAACAGCACATCATAAGTTTCTATGCATTTTCCTTTTTGTAACTTGTCAGCTAAGGAGTAAAGTCAGTCAATGACTTTTCTGCATTATAAATTCATTGCCACGGCACAACACAGCACAACACAACACAGCACAACACAACACAAAACAAACACTGAGCTTTGTTAATAGCTGTTTCACCACCTTTGCTTCTCATCTTCCTATCTTTGTTACAACTACA


Gene Sequence:
>Vu_36782(-)
ATGGATGTTATAGGATTTGGTTTCAGACCCACAGAAGAAGAACTTGTCGACTATTACCTCAGACACAGGTTGCTGGGTGATGATCCACGAGTCCACGTCATCCCCGACATCGACCTCTGTGAAGTGGAACCTTGGGACGTACCAAGTAATAATCTAAACCTTTAACACTTCATGCATCTTCATGCAACCATCACTTGTTCTTTATCTTTCTCTTATAATTTCTTTACTGTTGTTTGTTTTGTTGTTGTTTGAAACAGTGTTATTAGCGGAGTCAGCTGTACCATTCGATCTCCCGGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAACAGTAAAAGGATTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACCGGAAAAGATCGTGAGATTAGGAGGTCCGACTCCAACACTCTCATTGCCAAAAAAAAGACTCTCGTTTACTACAAAGGCCGCGTTCCACGTGGTGAGAAGTCCAACTTTGTTATTCATGAATACCATGCTGTTACCTTTCACGAAAGCCAGGTTGGTACGCGTTTTTGGAGAATTTTAACACTTACTAGAAATAGTCTTTCTTGAATTTTCTTCACTGTTCTAACCTTTGACATATATATCAATGGATATTTTAAGTTTTATCATTTATATAGTAAGTTCCAATGATCACGTCATGGTAAGCCAAAACACACCAGCTTGATTCGTTTTGGCTTTTCATTTCCGCGACTTGTATGAAATAACTTCTGATTATGGTCTATCTGGCAGAGGACTTTCGTTTTGTGTCGCTTGATGAAGAAACCTGGGGGAACAACTGAAGATGGAGGCGATGAAGGGGAGAGCAGTAGAATCATGGTTTCTGGCTATGAGAATCAGTCAATAGCAGGAGGCATTCCTTCGGTAAGTTGAAACATTCTTCACGAACATATTAGCACTCTGTCATGTGAAAATGCTGAGAATTGATAATTGTGTGTATTTTCAGGGAAGTACATCTACTGGAATGGAAACGACCTTACAGCAAGACGAAACGTCTTTTCCAAACTCCTCATTTTAGGATGCCTATTTTAGAAATGAATCTAACATTGAGCATTTTTCATATGAAACTACTCAGGAAGAGGAATTCCTGAATTCTATTTTTGTTCACGAGGGTTATGTTAACAATGAACAAAATATAAATACCTTCTACAATACATTCACCCAATCGGAGTCATTGAGAAAGGTATACCGTGAAAGTAGTGATACGGATGCTGAGGCCGTCTCCGAACAGGTAAAGATATAATGTCCAATTTTTTCCAATGATACAATGAGCATCTCCATTTGTTTCTGAACTGTCCTATTACTTTACATTTGATTTCTTTATTTTGAACACATTGATTTCATCTGTTTATTTCCTCCTAAATCATTGCAGGGTGATAATATTACGAATATTCCAACAGTGTTTAGTAGATATCTTAACGTAAACGAATACCATTCATCAAAAGGGTTTGATTCTGAATTATCAGACGTGGATGTCGAGGAAGGTGTAGGTATGCCATCTTCCGTCCATGAAACAAACCAAGAGAAAAAGAAGAAAAAGAAGAGCATATTTTCTATCTTCTAATCATCATAGAGGAAGATTTCAAAGAATGCAGTATTCCATGTAGAGGTGAGAAAATCAAACAGATTCATTAGAAAAATGAAGATTACTTTCTTGACGAACGAGGCAGATGCTTCATTTGAACTGATTTTCACTTTAACATACTATTGATATACCATGCTACATTTGATGTATTGTGTAGGCTCGGAAGGATTTTCTCATTGTGAATCAGAAGAAAAATCAGAAAAAGGCTCAAAATACTAG