Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36750 LG11 28710944 28713805 PREDICTED: transcription factor bHLH57 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, cold acclimation, cold acclimation, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, protein homodimerization activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/T 28711020 intron_variant
T/A 28711034 intron_variant
C/T 28711141 intron_variant
T/C 28711171 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36750.1
MNASSHCKAYLLPKVAAAFKTIYFDHCSALMERLQGPLNSCFIGDPLGVNCLDQVLVDEETLRLEEEEQLLISSLEDKMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHITKPWEGMTYVPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSFSCVEKVSYECNQEPHKVSQSCPKSQPATTRERRKRKRTRPSKNTEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSSVLCKLPPTPSSSSPHGYGMRSSTSEEVSCGDEMKAENKSEAADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKLDTTSSPALGSGCRGIKDESLQGRWGNGEHRAFISCLHINMMCIMLGGS*


CDS Sequence:
>Vu_36750.1
ATGAATGCATCATCTCATTGCAAAGCATATCTCTTGCCTAAGGTAGCAGCAGCATTTAAGACCATATACTTTGATCACTGCTCAGCTTTGATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCATTGGAGACCCCCTGGGAGTGAATTGTTTGGACCAAGTTCTGGTTGACGAAGAGACCCTGAGACTAGAGGAGGAAGAACAGCTTCTGATATCAAGTTTAGAGGACAAGATGCCTTTTCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAACTTTCAAACACTTCTGAGGCTGCAGCACATTACGAAACCATGGGAGGGAATGACCTATGTTCCAAGAATGGAAGCACAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCGGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCATTTTCTTGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACACAAAGTATCACAATCATGCCCCAAATCTCAGCCAGCAACCACAAGGGAAAGGCGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACACGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGGCGTCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGTGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCTCGGTGTTGTGTAAGCTCCCTCCAACACCGTCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAACTAGTGAGGAAGTGAGCTGTGGAGATGAGATGAAAGCAGAAAACAAGTCAGAGGCAGCAGATATAAAAGTGACTTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAAACCAGGGCAATTGATAAAGGTCATTGTTGCTTTAGAGGACCTAAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGCTAGACACCACTAGCTCTCCAGCCTTAGGGAGTGGTTGCAGAGGAATAAAGGACGAATCATTGCAAGGAAGATGGGGAAACGGGGAACACAGGGCATTCATTTCTTGTCTTCATATCAATATGATGTGTATAATGTTAGGTGGTAGCTGA


Promoter Sequence:
>Vu_36750::LG11:28708944-28710944(+)
CCCTAGACAACCGCGGCATATTGCGCAGACTATATACCGCGGTTATGACCGCGGCATAAAGTGTCTGACTTACTACCGCGGCTGAATATGCCGCGGTTCAAGAACCGCGACGTATAGTGAAAATCAACCGCGGTAAAAGCCCCTCGCTGCACTAGTGTCCCAACACCCTCATCACTATTTATAGGGCTTTCATCCTTAGGATATTGTTGATGATTTTGGTTAACTTTATCATTGTTAAACACCATTAACATTAATGATATTTATATTTTTCAATGATACTTCATTAAACTAGTTTGACAACCTTAAAGTGGTTAGATAATCAAATTCAGTGAGAATTCCATTTGAATAAAACATTCAATGACATTCTTATTAAATAATCATAAACATAGAGAAAGATAAACAAATGAATCCCATTAATAATATTACTCTATGCAAATCCACTAATATCAGAAAACAAAATATATATATATAACTTATTGTATCTCATTTATTCTTCCTATTCCTTTACTTATTCATTACATTATTTTTTTATCATGTCTATCAAACTATACTATCTAAAGGTTCAACAATATTTATGTAATTACGTTTATCAAATAAGCTATTCATGTTGTTTCATCAACCAAACATAACTTTATGAACTAGTGTTCAGTAAGACATGGTATATAACAATAATTAATATAATAAATGTAATAAAAGTTATACAACATAATATAACATGAGAAAATAGGAAACTAAACACAGCATAAAAAAATAAAAATTTTAACAATACAAATAAAATATTTAAAAAAATGTTTTCAATTACAATAGAAATTTGCAACCAATAGCATAATTAATAAAAAAAGTTATAAATTACAAAAGTCGAATATGGCAGTTTTTATCACCAGCTCAAGTAGTATAGTGGAGCTTCGATATATAACCTTCAACTAAAGCTACATCACACTAGAAACAAGAGGAAGTAAGGTTCAACACCGAAGCTTCACTGTCATAGACACAAAGAATGTTATTGATGTTCGTATGGGTTCAAACTTGTGCAACAACTCTTTGGTCAAGCCTTGACATTATTAAAGCAAAAGAATATAATGCTTTGCAGATATTAACTTTAGAAAAATTTTGTGCAATTTATGAAAGTATTTTCACATGAATGAGTTCAATCAAAGCAAAACAATCAATTGTCCAATACTAGAATGTCTTTCGTGACATATCATATAAGTTTGACTTGAATGAGAAATGGTAATAGATATAATAATTTTTTTTCCTTTACTTTCTCTACAAATAAGTAGAAGTCAAACACTGATGATCATTCCAAATTTTTAGATATAATGTATAAATTTTAGTGATAGAAACAAAGTAAAAAGTAATGTCATATTGATAATTAATATATTTGGTATGCTTGTTTTATATTCTTTCTGAAAACCCTTAAAATCCTTTTCTGTAAACCACACTATTTGAAAAGATTTCAGGCTATACCTTGAAACTAAACGAGTTACAACATATTACGAGTGTCATACTCTATAATATTGGAATGTGACCATCACTTTTTTAGCTATTAGGAGTATGTTTGAATTGTGAAATACACATTGAAAATGGCGTGATTGAGAAAATAATAAAAATATGATGTATGCTATGTGATTTTGTTCTTATGTGTAACTAATATTAGCCTGAATAGGAAATTGGACATGATCCATCATCATCATCATGCAGACCACACAATCCATAGAAGGCCTTTCCAGAGCTGCTTCTTTTTCTATTTTCTAAATTATTAAAATCCTCCCTGGCTTTGCCGTACTTTCTCTCTCTCATATGTCATGAGGGAGAAAGAGAGAGAAGAAAGACATAGAAAGGTGGGAGAGAGTCCCACAACTGCCTGTCCCCGCTGCTGGACAAAACTGCCACCGCCAATAATGCTTGGGACCTTGTAAACCAGACAAGTAACTCCTTCCCTCATACACACTCTCTCTCACACACACTCACTTACCAACTTCTCACAACACTGTTTCAAA


Gene Sequence:
>Vu_36750(+)
ATGAATGCATCATCTCATTGCAAAGCATATCTCTTGTAACCCCAGTTGAGAAGTTTCCACCTTTCATTTCTTACCACATCCCTCTCTAACTCTCTTCCCATATCATCCCCTACTTTCTACTTCTGCTTCTGTTGTGTGACCTCAAACTTCTTCAAAGCACATTATTTATTGTTTCTATTATTATTAAATTATTATTACTATTCTCTCTCTCTCTCTATCTATATATATATATATATGTATATATATAAGCTATAGCAAAGCCATCAGAATATATTGCGGGGGTGTTAGTTACTCATATGGGGTCTCGCTCTGCTTCTCCTTAGGGATTACATTTATTAGCATTCTTTTGTTAGTATCACTACCATACGGAATGTTGGTCACCCTCGTAGAGGCCTAAGGTAGCAGCAGCATTTAAGACCATATACTTTGATCACTGCTCAGCTTTGATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTGTATGTGTTGCTTACTCTACTGCTACTACTACTACTATATTATACTTCTAACTAAAACTACTATTTTCTAATTTCTACTTACTTTCCTTACTCTCCCATCCACACCTTTCCTTTCTTCTTCCTTTTCCTTTTTCTTTTCATCCAACCCCATTTCTGGATACAAGAAAAGTACTGCATTTACTCTTCAAAACGCTTGCATTAAATGCACCATTGTGTTACTATTTTTCTGAAAATACATGTATCTGCTCCCTTCTTTGACATTCCTCTTTAGTTCTTCTTTTATTGCTCACTTTCCTGTATACACTTACTCTCTTCTCCATTCTGACCCAACCCCAACACCATTAATGGAACCGTATATTCCTTCCTTCATTCTTTTTAATTCACTTGGGTGTGAGAGTGAACTAAAACCCATACCTCATTCTCTTGCCATTATTTCTCACTTCGTGTGTTAAATTCTCTCTCTTGCAGTTCATTGGAGACCCCCTGGGAGTGAATTGTTTGGACCAAGTTCTGGTTGACGAAGAGACCCTGAGACTAGAGGAGGAAGAACAGCTTCTGATATCAAGTTTAGAGGACAAGATGCCTTTTCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAACTTTCAAACACTTCTGAGGCTGCAGCACATTACGAAACCATGGGAGGGAATGACCTATGTTCCAAGAATGGAAGCACAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCGGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCATTTTCTTGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACACAAAGTATCACAATCATGCCCCAAATCTCAGCCAGCAACCACAAGGGAAAGGCGAAAGAGAAAGAGAACAAGGCCAAGCAAGAACACGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGGCGTCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGTATGCACTGTATGCAATCAACTTTTTGATATGTGGAGTCCAATTGTCAACCCCATTTTCTCTAAGTAATTTTTTGTTTGTTTACTCAGGAGAATGGAGTTTTATTTTGATAATTTAGATAATAAAAATTTATGTTTAAGATTTACAACATAAATCTGAGGTAAAATTTCAATTCAGACTGAAAAACAATATCCATACTGACCAAAGTTTTTTCCCTTTACAAGTCCCTTTTCTTGCTTTATCCGTGCTAAAAATCCAACCTTTTTCAGTGTGGGAAGCTGAAAAATATTGTCTTTGTTTTTTACCCTTTTTATTGATACTGATGTATTGGATCATTATTCATGGGGCAGGGTGACCAAGCCTCAATAATTGGTGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCTCGGTGTTGTGTAAGCTCCCTCCAACACCGTCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAACTAGTGAGGAAGTGAGCTGTGGAGATGAGATGAAAGCAGAAAACAAGTCAGAGGCAGCAGATATAAAAGTGACTTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGGAAACCAGGGCAATTGATAAAGGTCATTGTTGCTTTAGAGGACCTAAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGGTATTACTATGTCTTTTCACCTCAATTGTTTTATTTTTAAATATGGTCAACTCTACAAAGAGGAATCAAGTCAGTGTACTATTATTTTCTGACTTGCAATCTAAGCAAAACCTGCCTTCCCTATTTCCAACATTGTCTACAATTATAATTATAATTACAGGAAGAATTTATTTTCGGACCTTTAGTAAATCACTATTCATTTAACATTAGTATATTCTTTGACTGTACTACACTCGAATTTTTTCCTTTCTTTAATTTTGAGTGACAAATAATGGATTTTGGCGTGGTGTGGTAATAATGCAGATTGAAGAAGGCTGTAGCCTACTTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGTAGCTAGACACCACTAGCTCTCCAGCCTTAGGGAGTGGTTGCAGAGGAATAAAGGACGAATCATTGCAAGGAAGATGGGGAAACGGGGAACACAGGGCATTCATTTCTTGTCTTCATATCAATATGATGTGTATAATGTTAGGTGGTAGCTGA