Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_36724	LG11	28366554	28367936	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/A	28366597	missense_variant	p.Val15Asp
A/G	28366681	missense_variant	p.Tyr43Cys
C/T	28366682	synonymous_variant	p.Tyr43Tyr
G/A	28366694	stop_gained	p.Trp47*
T/C	28366718	synonymous_variant	p.Gly55Gly
A/G	28366775	synonymous_variant	p.Pro74Pro
A/G	28366797	missense_variant	p.Thr82Ala
G/C	28366822	missense_variant	p.Arg90Thr
G/A	28366972	missense_variant	p.Ser140Asn
G/T	28367015	missense_variant	p.Glu154Asp
T/G	28367039	synonymous_variant	p.Thr162Thr
T/C	28367085	missense_variant	p.Tyr178His
A/T	28367234	missense_variant	p.Lys227Asn
A/T	28367236	missense_variant	p.Lys228Met
G/C	28367237	missense_variant	p.Lys228Asn
C/T	28367326	missense_variant	p.Thr258Ile
T/C	28367477	synonymous_variant	p.Asn308Asn
G/A	28367564	synonymous_variant	p.Ser337Ser
G/T	28367580	missense_variant	p.Gly343Cys
G/C	28367693	missense_variant	p.Leu380Phe

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_36724.1

MEELIISPSSSSSLVTLPHQNPTPSIQQNLQFLLQTQPDWWVYAIFWQASHDDNGNLFLSFGEGHFQGTKETSPKFSTPVSTKKFPKTPRTENINDAEWFYVMSLTRTFPVNNSSSSTSTTPSSLLGKSFALGSVLWLNSKHELQFYKCERSNEAQLHGIQTLISIPTQNGVIEMGSYDSIKQNWNLVHHVKSLFQPLPDPLPVQLLNDHTISFADIGVVAGIQETKKRKQTQTPPKSQKDSYVDSEHSDSDCPTLPTTSTPTASEPKKRGRKPVLGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESQQQREGNKRVKTEMMDTMDNQSTATTSTIVDQGRPGPGGPCPLGLEIDVKIVGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPDGMRSEESLKSAILMRLDQ*

CDS Sequence:
>Vu_36724.1

ATGGAGGAACTCATCATCTCCCCTTCCTCATCCTCCTCTTTGGTCACTCTACCCCATCAAAACCCAACACCATCTATTCAACAAAACCTCCAATTTCTCCTTCAAACCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGTAACCTTTTCCTCTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACTTCTCCAAAATTCTCAACCCCCGTTTCCACCAAGAAGTTCCCCAAAACCCCCAGAACAGAAAACATCAACGATGCCGAGTGGTTCTACGTCATGTCGTTGACTCGAACGTTTCCCGTCAACAATTCTTCTTCTTCGACCTCTACCACTCCTTCCTCACTCCTTGGCAAATCTTTTGCTCTGGGCTCTGTGCTGTGGCTCAATAGCAAACACGAGCTCCAATTCTACAAGTGCGAGAGATCAAACGAGGCACAGTTGCACGGGATCCAAACTTTGATCTCCATCCCCACACAAAACGGCGTCATCGAAATGGGATCCTACGACAGCATCAAACAAAACTGGAACCTCGTCCATCACGTCAAGTCTCTCTTCCAACCCCTCCCAGATCCGCTTCCCGTTCAACTCCTCAACGACCACACCATCTCCTTCGCTGACATCGGCGTCGTCGCCGGAATCCAAGAAACCAAAAAGCGAAAACAAACCCAAACACCACCCAAAAGCCAAAAGGACAGCTACGTAGACTCCGAACACTCTGATTCGGATTGTCCAACGCTGCCAACCACCTCCACCCCGACAGCCTCGGAGCCCAAAAAACGTGGCAGAAAACCTGTTCTCGGCCGCGAGACACCAATGAACCACGTGGAGGCTGAGCGGCAACGGAGGGAGAAGCTGAACCATCGCTTCTACGCGCTACGCGCTGTGGTTCCGAATGTTTCGAGGATGGACAAGGCTTCGTTGTTGTCCGATGCTGTCGCTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAAAGAGAGGGTAATAAAAGAGTGAAGACAGAAATGATGGATACCATGGATAATCAGAGCACCGCCACTACGTCCACCATCGTAGACCAAGGGAGACCTGGTCCTGGAGGCCCATGCCCATTGGGTCTCGAGATCGATGTGAAGATCGTGGGGCCTGATGCCATGGTGAGGGTGCAATCCGAAAATGCGAACCACCCCGGGGCGAGGCTAATGGGTGCACTGAGAGACCTAGAGTTCCAGGTTCATCACGCTAGCATGTCGTGCGTCAACGATCTCATGCTTCAGGACGTGGTGATCAATGTCCCTGATGGAATGAGGAGCGAAGAGAGTCTTAAATCTGCCATTCTCATGAGGTTGGATCAGTGA

Promoter Sequence:
>Vu_36724::LG11:28364554-28366554(+)

ATTAATAGGAGAAACAAAGATTACGAGTGCTTTCCTTAATTATTCTTTTGGTAACGTTTATTGAATTGATGAGAGGAATAGGAATTCTTATTTTGTAATATATAAAACTTTTCGTTTACTTGTTCATCAAATTTCTAAGTTGGTCTTCCATATTATCTTTTTTCTAGAGTCTCAAACGATCTTGTATAAAGAAGATAGTTAGAATCATTACATAAATATAAGATAATTTTGTATCAAAAATCCAATTTTACACATCAATAATAATCTTTACATATATATATATATATATATATATATAATTATTCAAAAAAAATAATTATATACATGTTCTTGATCCATCTAGATCTAAAAAAAAAATCAATCATATCTTTAATAATCAAATTTATATTTTTATCCTTTATGAAGATTTAGGAACCTCACATGTTTCTAACTTTTACAAAAGTCTAAGAAGCTTCATATACAATTCTAATATCTACGAAAGTTGAAAATAATTAAGAGATATTTCGAAAAGCTTGTGTTAAATATGATCGTCATCTAAGTACTAACATACTAATATACAAATCCCAATATTACACAATCATAGTAATCCATTACATATACTTCATAAAGTATGATGCAAAAATCTCCGTTATCTTCCTAATATTTTAATCTGTTTAATTTAATCTATTAGTGAAGTTAATATTAGATTATCATCTCAAATAATCATCAATTTCTCAACCAAATCACATAATTCAATTTATATTCATATCATTAAAATTAACTTATCATTTGAAACCTATCAAATAATAAATAAATATCTTATATTAATTTTTCAGTTTTCGATTATAACAGTTTGTTTTGAATTTTGATTATATTGTTCTGAATTATCAGTTATTAGTTGAAACTAAATCTATCATTTAATTTTTTTATTCCATTGAATAGATATAAATCTCGAAATATAAAAGACAACGTTTCTGTCGCTATCGCATTATTTATCATACCTATATTTATATTTATATAGTAAATAAATAACTCTCAGCAAAATTTCCAAAACTTAAATTTTCATCTGAAGTGATGAATACTTTTGTAATGTTGTATGTGGAGGACATAATTGTAAAAGAAAAAGTGGTACCTTATGTAATTATTGCACTGAGCTAAAAGTCATAAGAAAACAACGACAAGACAGTTGACGAGCCAATGGGACTAATTGTCTAATTTAATAATCAAATTATTGATTTAATCTATATTTTAACATTCTGTTTATCGATATATTTTAGTCTTTATTCATGCAAGGATTACAAAAAGTGAAAAAGTCAGATATATAGTTAAGATAAATTAAAATAAAATATAAAAATTGAAAACTTTAATATTAAACATATAAATAATAGTTCAATTATCGTCATTTTGCATGATGAAACTTATAGAATTATATAATATTATAGAATTACGATTTTTTACTGAATTTGATTAGTAATATAGATATTAAAAGAAACCTGTTAGTATATTTTGAAGAGAAAGGAGGAAAATCGAAATTGGTTCTTGTATGAAGGTAGTTCTCCGTGCAGCAGTGCAACTTTCGCTTTCGCGTCACGTGCTTGGTCTTGGGGCTCAACATCGACTGCATCTCAACCTCACTGATTTTGAACCAAATTTTCTAAGGCATTCCCACCAAATTGCAGAGTTTTTCCCCCACCATCTTCTCCCAGTATAACCCCCCTTCCCCCACCCAAATCTTAATGCATTATTTTTCCGGATTCCTGTTGTAAAAAATATTGTCAAAAAGAAAAAGTAGTTAAAAAAATATTTTTCCTTTTTTTCCTTTATATTTCACACTCTTACACCCTTTCCTCACGCTAAAAGGACTGTTCATCCGTACATCATTTATACCTTATCTTCATTCTATTAATGCCCAAACCTTCTCACCCACTTCTTTCATTCTTCCATTTTCTTCCACACCTAAAAAATATTTCCTTCTACCTCTCATACTACATCTTCTCACGCAACACAACACCACACCACTA

Gene Sequence:

>Vu_36724(+)