Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36720 LG11 28262282 28263733 PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to abscisic acid, response to abscisic acid, response to water deprivation, abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to water deprivation, positive regulation of transcription, DNA-templated, response to water deprivation, positive regulation of transcription, DNA-templated, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/G 28262320 3_prime_UTR_variant
G/A 28262504 3_prime_UTR_variant
T/G 28262567 missense_variant p.Gln235His
G/A 28262570 synonymous_variant p.Tyr234Tyr
A/T 28262572 missense_variant p.Tyr234Asn
T/C 28262574 missense_variant p.Asp233Gly
T/C 28262683 missense_variant p.Asn197Asp
T/G 28262835 missense_variant p.Glu146Ala
C/A 28263042 intron_variant
T/G 28263043 intron_variant
T/G 28263335 missense_variant p.Tyr45Ser
T/C 28263448 synonymous_variant p.Ala7Ala
A/T 28263509 5_prime_UTR_variant
G/A 28263653 5_prime_UTR_variant
C/A 28263682 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36720.1
MEYTYSAEGAEAETYTSSSTTPSSGIRSKKKSNNTRRFSDDQIKYLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEAGQSRTQVEAENRMDSESENGGTMKCELEEKPSPSIERSEHAHGVLSDDDASIKAEHFGLENEHGLLNFAEHADDSLTSPEDWSAFESDGLLGQTTSDYQWWDFWS*


CDS Sequence:
>Vu_36720.1
ATGGAATATACTTATTCAGCAGAGGGTGCAGAGGCTGAAACTTACACCAGTAGCAGCACCACCCCATCAAGTGGCATCAGATCAAAGAAGAAAAGCAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATATTTGGAAACCATGTTTGAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGACCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTCGAGAGAGACTATGGTATACTACAATCCAATTACAACAGTTTAGCCTCACGTTTTGAAGCTCTCAAGAAGGAAAAACAAACATTACTGATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTGGAGGCAGGTCAGAGTCGGACACAAGTTGAAGCAGAAAACAGAATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAGCTCGAGGAAAAGCCAAGCCCATCCATAGAAAGATCAGAACATGCACACGGCGTTCTGTCTGATGATGATGCTAGCATAAAGGCGGAACACTTTGGCCTAGAAAATGAACATGGTCTCTTGAACTTTGCTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATTGGAGTGCTTTTGAATCCGATGGTCTCTTAGGCCAAACGACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA


Promoter Sequence:
>Vu_36720::LG11:28263733-28265733(-)
ATGGAGGAGTGCACGCCAAAAAGCGCAGGCCAAAAACGCCGACCAACAACACGCGAGTAACTGCACCAAAACGCAACGAAAACACATTTTAATCAGTTCAAATGGAAAATATTTCATCAAAGAGTAATTTAATCGGAGTAAAAGTAAATTTAAACGGTCCAAAAGAGAGAAAACGCACATGGAAATGCAATGCCGCAGAGAGAAAACGCGAGGAGGAAGACGATGAAAAGTGAGGGTAACTCCCCGCGGGTTCACGTTTTCCTATATAATAGACTATAGACGTCGGATTCTGGGAGGGACCGACGTCTATAATAGTCTAGACGTCGGGGCCCTCACTAATATGACGTCTTTTCTGATTTAAAAATTAATATTAACGGTGCATAGAGACGTCGGTTAGAAGGGGGAAAGACGTCTAGGTTAACTTTTCACCTATCCTGTCAGCCATATAGACATCTGTTACAGGGGGCCGACGTTTATAATAGACTATAGACGTCGGGGTGGCGGGATCAGATGTCTATATGGCGAAAAAAATGACTTTTCACCTACCTGTCAGGCATATAGACGTCTGTTAAGGGGGGGGGGTCCCGACGTCTATAATATTGTAGACGTATGACCCCCCTTAATAGACGTCTATATGTCCAACTTATTTACGTAAATGACACCGGTCAATAATTTACGTTGATTATTTTGTGGTCCGGCGTCTAAGGGGTGACGTTAAAGGTCATTTCTGCACTAGTGCGAATGTCTAAAGAGGAAAAAAACAAATATTACGAATCGTTTTAACAATTTATTTAATTCATATTTTTATTAAAAGCATTTAATATGTCTGAAATATGAAATGTTTAAGGTTTATTATTTCGAGTTTTAAATTTTTGAATATTAATAAACACTGTGTTTAAATAAAAGTGTTATTACGACAGAGAATAGTTATATCTAAACTATCTCTAATCCCAATTTCTAATTAGCCTTAATTTTTTTTCTATGTATCGAACCGGTCCCAAACAAAATTAGTTTGTCACATAGACTAAAAAAACATAAAGATTCTTACATGCAAACACGGCTTGCTGATGAAAAGAAAAGAACAAAAAAACATTTGAGCATTAACTTTAATGTCTTAACCACGCAATGATCTTTTATGTGACAGTTCTAATTTCTTACTCAGATTTGGTGCATGTTTGGACACGCATTTTTAACTCACGTGTCTGGCAATTTTTATGTCAAATGTTAATAAAAAGACGCAAAAGATACACTCGAAAGTAGCCTTTCCAAAAATTTTCCACAACACGTTTTTATTCGTATCATATTGCTTCCTAAGTACAACTACAATTTTTTGCCACCAAAACATAATCTTTTGTTGCTTTTATCAAACATTATGCTTTAAGAGCCTCATAGAACAAGTCTATTGTGGTGCTTTTGAATCAAGACCACAAAAAGATAAAAAAAAAACACATGAATCATGCTAACAACAGAGGCTTCTCTTCAGCAATAATAAAAAAATCTTAAAAAAATCTTGACTAAATGTGTAGACGCAGAAGATTTCTTAAAGAAATACTAATATTGTAAGATAAAGTAAAGAAAAACAGTATCAATATAATAGTACTGATTTGATCAATAAGGTAGCGCAGCAGCTATTAAACTAGAATAAATAAAATTTTAATGAAGAAACGTGATTCATGAAACCGACACAACTCTAGGACAAAACGTTGAAGTTAAAATAATGATGACAGCGATAACGACCACACGAATATCAAATACTGCATTCTTACTCACATAAATCATTAAAATTGTGATTAAATAAACCAGAAATGATGAATCTGATGACAGAATATGATATATGAATATAGAAGTTATAATTGAAGCACTCAGCAAAAGCAAGCTTCAGAAGCCAAGCCAGCAAAGAAGGCTCGGAACCAAAAGTAGTGCACAAAGTTTATCTCAAAAGCTAGAGATAAAAAAACAAACAGATATAAGAATAAACGTCACTGACTTAGAAAAATAGG


Gene Sequence:
>Vu_36720(-)
TAATATTCACAACATACAGGTGGAAGAACATCGTGTGTTAAGGTGTCAACAGGACCAATGAGTTTTGGATATAAAGCCAGCAATTGGGGACTTCACTCTGACCACCATGATAGGAACTCCAATAAGCAAAAGCCAATTGATACTTGCATATCAAAACATACACACACAAACATTCTCTAAAAAATCCTCTATCACCTAACTCACCTATCTTCAACTCAAGGCCCTTTAGTCTCAGCTAGCAGCAAGTGTGAGAGTGTTACACAACATGGAATATACTTATTCAGCAGAGGGTGCAGAGGCTGAAACTTACACCAGTAGCAGCACCACCCCATCAAGTGGCATCAGATCAAAGAAGAAAAGCAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATATTTGGAAACCATGTTTGAGACAGAGTCAAGGCTAGAGCCTAGAAAGAAGTTGCAGCTGGCAAGAGACCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTCGAGAGAGACTATGGTATACTACAATCCAATTACAACAGTTTAGCCTCACGTTTTGAAGCTCTCAAGAAGGAAAAACAAACATTACTGATTCAGGTACTTTATTCAATACAGATTAACATATTCTTTAGTGTTTTTAGTATTGTTCTTCAATTAGAATTGAAGTTTTACTTCATTAATTGGGTTATGGGTAGGAAGATTCTTGAAATGAATGAAAGTACAGTTCTGAGTTTTGTCCAAGATATGTATCAATTTCTGTAAAGTAAAATTGTTTTTGTATCTGTTGTCATCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTGGAGGCAGGTCAGAGTCGGACACAAGTTGAAGCAGAAAACAGAATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAGCTCGAGGAAAAGCCAAGCCCATCCATAGAAAGATCAGAACATGCACACGGCGTTCTGTCTGATGATGATGCTAGCATAAAGGCGGAACACTTTGGCCTAGAAAATGAACATGGTCTCTTGAACTTTGCTGAGCATGCTGATGACTCCTTGACTTCACCGGAAGATTGGAGTGCTTTTGAATCCGATGGTCTCTTAGGCCAAACGACCAGTGATTACCAATGGTGGGACTTCTGGTCCTGAATGAAACAGAACAACCAAAATTTTGTGAAGGAATATGTATGCATACATATTAATGCTTCATGTTTGGTTCCATATTTTGCATGCAAATCTTCACATCAACCCAGATGCAGCTAGTTATAGCTTCTACATTTTTTTAGCAAAATTGGCGTATTTCTTTCTCTATCTTTTGAACAAGTTTCCAAATACAAACCAAATTAATAAACAAGGAAACATCATGAAACGCGAGCTAAGACAAAAAGCAGAATAAAACAGGTTTCTTACATC