Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_36691	LG11	27939798	27940658	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/G	27939947	missense_variant	p.Phe50Leu
T/C	27939950	synonymous_variant	p.Cys51Cys
G/A	27939953	synonymous_variant	p.Lys52Lys
T/C	27939959	synonymous_variant	p.Cys54Cys
G/A	27939961	missense_variant	p.Arg55Lys
G/C	27939975	missense_variant	p.Glu60Gln
A/T	27939980	synonymous_variant	p.Gly61Gly
G/T	27939983	synonymous_variant	p.Gly62Gly
T/A	27939986	synonymous_variant	p.Ser63Ser
G/C	27939989	synonymous_variant	p.Leu64Leu
G/A	27939996	missense_variant	p.Val67Ile
G/T	27940001	synonymous_variant	p.Pro68Pro
G/A	27940011	missense_variant	p.Gly72Ser
A/T	27940016	synonymous_variant	p.Ser73Ser
A/G	27940067	synonymous_variant	p.Ser90Ser
T/A	27940343	synonymous_variant	p.Gly182Gly
T/C	27940457	synonymous_variant	p.Val220Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_36691.1

MEGMAPNSCARPGLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSGGAGASASSSSSSSSKIPDLNPPNLSALSSQNPKILHGGQDLNLAFPAMDKYHHHHGISPYVEMQNSDSTTHHHQNSPSCSAAPTSLSALELLRSSMASRGLNPYAPSSLMPNSANNNALYPSGFPMQEVKPSLSFSSVDGMGNRSYDHQVQERGGRVLFPFGDVNKQLSAAGSAEVEHGKEQQQQHQQGNSTGYWTGMIGEGTW*

CDS Sequence:
>Vu_36691.1

ATGGAGGGGATGGCTCCAAATTCATGTGCAAGGCCAGGTTTAGAGAAGAAAGCAAGACCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACTAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGTAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCGGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCACTTCAGGAGGAGCAGGAGCCTCGGCTTCATCATCTTCATCGTCATCATCAAAGATTCCTGACCTAAATCCCCCAAACCTCTCAGCTCTCTCTTCACAAAACCCTAAAATATTACATGGTGGCCAGGATCTCAACCTGGCTTTCCCAGCCATGGACAAGTATCATCATCATCATGGCATCTCCCCTTATGTCGAGATGCAAAACAGTGACAGCACCACTCATCATCACCAAAACTCTCCTTCTTGTTCTGCTGCTCCAACCTCTCTTTCGGCTCTTGAGCTGCTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTTCTTCCTTGATGCCAAACTCAGCAAACAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTCAAACCAAGCCTCAGCTTTTCCTCAGTTGATGGGATGGGAAATAGATCATACGATCATCAGGTCCAAGAGAGGGGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAATAAGCAGCTTTCTGCTGCAGGATCAGCTGAAGTGGAACACGGTAAAGAACAACAGCAACAGCATCAACAAGGAAACTCAACTGGATATTGGACTGGAATGATTGGTGAAGGGACATGGTAA

Promoter Sequence:
>Vu_36691::LG11:27937798-27939798(+)

TGAAATAAATGTTTCTTGAAAAATACTAATTATATTTATAGAATAATGTGTATTTATATTTTATTGAAATAATACTTATTTTAAATATATAATAATAATGTAATGAATAATATAATATATGTTCAAATATGATGTATTTGTCAGAGGAAATAATATAATATATGCTTAAACATGCTTTTACACAAAATAAACATTGATTTACATTTATATGTAACATTAAGCTATAAAGAGAATTAATTAGTTATATCAAAAGCATACGGTTTAGCACATTTTAGTTAGCTGCTTAGTCAGGTTTTGAGTTGTCATGTTGGTAAAATCCTTGTTTACGATTAATTCATAGCATGAGCACACAGATCAAATTTTACTTTTGAAATAACCATTTAATTGAAGAATCGAACGTGTTCATAACTTTGAAAGCAATATGGTGCAACCGTTGAAAACACACGCATGTAGGGAAGTTTATTGAACATATTGAAACATTATGAATTAATTTAAAAAAAACATTATGAATTCAAACAAACCGAACCCTGTATTACGCATAAAGGAAATAAAATCGAACATATTTTTCCGATAAGAGATAAGTTAATTGAATAAATAATGCTTAAGATTAAGAATATAGTCTTTGATTCTGGCCCAAAATAAAGAGTACTTGATTACAGAAAAAGTAAGTTTGACTATTTGAACCGCCAATAAGAGTCTATGTTTTTTGAAAAGTTGAAACACTCCACAGTACATACTCATTATTCTGAAAAAAAAAAAGAAAAAAGAATGGATAAATATTAAAACCATTTTTAGATTATAAAATAGTCTTTTCAAGAACTGTGTCTTTCACAAAGTTAAATTAATTTTGTATTACAATTCGTAAAAGATAAAGTAATTTGAAAATGGACAATCGCATTTTGATACTAGAATTGTTTTTAAATCTATAGGACATTATCTTTCACTTTCTTTTAAATAGAAAAGTTAATTTTTTTAATACCATTTTATCCTTCTAAAAATGGTCAGATAATTAAACGGTGTCAATAACTTTAAAAGAAAGAGAAGATAAAATAATAATAATAAATAATATGATATACGTGACGAAATATAAAATTTAAAAGGAAATGAAAAGAGAGTGTGTATATGTTGATTATAGAGATTATAAAAAAAAAAGAAAGAGTGAGTCCCTTAAAGGCTAAAAGATGGATGATTGGTGAAGAGAGATATTGATAGTGTAGTCAAACGAAAGAAAACACTTGTGTTATCTCTTCTCGCTTTCTCCTTTTCCTTTGTTGCATTCATAAAGTAAGCCTACGCATAAAGCCACCCCACAAACCAACCAAAACATTCTTTCTTGCACTAAGGAGCAGTTCCAGACAAACAAGGTGAATTTCTTTCTATCTCTCTCTCAAATCACCCTTTGCTTTTCTTTCAATTTCATGGCTCTACCATGTCTTTTCTCTCAACCACAATACTCAGTTATTTATTCTGGGTTTCGCCTTCTTCAAAAGCTGACACAAAATATCAACTTCCACTAGATTTCATACTTGTTTCTATCTTTCATTTAATTCATTTTCTACCAAGATATATATAAATATATATATACCAGACGATTCTTGCTACACATTCCACCTTCTATCTTTTTCTACCAAACCAAGTTTTTCATCAAATCCCATAAACAAAAGCACTGCTTTTTCTTTTCCTTTCCTTTTCCTTTTTGCTCTCGTGTGCGATCATTTGTTAAACCAAACAAAAATTTATAAAAGTATTGATTATTGATTCCTTTACATTTTCTAAAACTTTGTATTTATCTTAGTACTATGTCTTTGATTTTCTTGTTGACTATATATCTTCAAAATTCTTCTGTGTAAACTTCAAATCTCTGAACCATGTAGTTTTATTTGGTTGGGTAAAGCTGAGTTTTTGTGGCTGTGGAGTGTAGATTGTTGTCACATATGAGCACTTGTAACTGTAGGTGTTCGTTCTGTCTCTTCTGGGGTTTATTGGAGTTGTGAGAGTCA

Gene Sequence:

>Vu_36691(+)