Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36644 LG11 27268391 27271123 probable WRKY transcription factor 53
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 27268601 3_prime_UTR_variant
C/A 27268654 3_prime_UTR_variant
C/T 27268854 missense_variant p.Gly309Glu
C/T 27268991 synonymous_variant p.Gly263Gly
A/T 27269072 missense_variant p.Phe236Leu
G/A 27269078 synonymous_variant p.Phe234Phe
A/G 27269306 synonymous_variant p.Asn158Asn
C/A 27269368 intron_variant
G/A 27269375 intron_variant
G/T 27269538 intron_variant
C/T 27269614 intron_variant
A/T 27269809 intron_variant
T/A 27269881 intron_variant
G/T 27269979 intron_variant
G/A 27270049 intron_variant
G/T 27270080 intron_variant
A/C 27270135 intron_variant
A/T 27270139 intron_variant
A/T 27270144 intron_variant
A/G 27270188 synonymous_variant p.Tyr137Tyr
C/T 27270198 stop_gained p.Trp134*
C/A 27270251 missense_variant p.Glu116Asp
A/T 27270317 intron_variant
T/G 27270321 intron_variant
C/A 27270510 missense_variant p.Val66Leu
G/A 27270587 missense_variant p.Ser40Phe
A/T 27270601 synonymous_variant p.Ser35Ser
T/C 27270610 synonymous_variant p.Ser32Ser
T/A 27270753 5_prime_UTR_variant
G/C 27270756 5_prime_UTR_premature_start_codon_gain_variant
T/A 27271048 5_prime_UTR_variant
T/A 27271096 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36644.1
MEESAQCEQVSVIDELLLGKELTKKLCEQLFSSSSSSSSSSSSSCDTNEVLIEKIISTMEKALAKVNCMANVGESKAMMDSHCSFTNGSPKSEVVEPEVEHKHVSKKRKTMPRRREQVEVCLGTEGNKEDGYSWRKYGQKDILGAKFPRGYYRCTYRNIQGCLATKQVQKSDEDPMIYEITYIGRHTCTQASHLKKTAVPPSKTKVRIEENEHQTNEKNQPQQEKIEQPPETIFSFGSQGEVKVEDLDLEIFPSFCFSSPSVGSENEENNNIFPYSMIDNNLLENFSPSFMSTTTTSESDMFFNWESTGLGQSVHNSTSDITDIVSTPTSVTYSSIMDLDIFLDKNDFDTDFPMNTRELCI*


CDS Sequence:
>Vu_36644.1
ATGGAAGAGAGTGCGCAGTGCGAACAAGTTAGTGTCATTGATGAGTTGCTGCTAGGGAAGGAGCTCACAAAGAAGCTTTGTGAGCAACTATTCTCATCTTCCTCTTCCTCATCATCATCCTCCTCCTCTTCTTGTGACACAAATGAAGTCTTGATTGAGAAAATAATTTCCACCATGGAGAAGGCACTTGCCAAGGTGAATTGTATGGCTAATGTAGGAGAAAGTAAGGCCATGATGGATTCCCATTGCTCTTTCACAAATGGTAGTCCCAAAAGTGAGGTCGTGGAGCCTGAGGTTGAGCACAAACATGTCTCTAAGAAAAGAAAGACCATGCCAAGGCGGAGAGAGCAAGTGGAGGTGTGCTTGGGAACAGAAGGAAATAAGGAAGATGGCTATAGCTGGAGAAAGTATGGGCAGAAGGACATTCTTGGAGCAAAGTTTCCAAGGGGATATTACAGATGCACATATAGAAATATACAAGGATGTCTGGCCACTAAGCAAGTGCAAAAGTCAGATGAAGATCCAATGATATACGAGATAACATACATAGGAAGACACACATGCACCCAAGCAAGTCACTTGAAAAAGACAGCGGTGCCCCCATCAAAAACCAAGGTGAGAATCGAAGAAAACGAGCACCAAACCAATGAAAAGAATCAACCACAACAAGAGAAAATAGAGCAACCCCCAGAGACAATTTTCTCCTTTGGATCACAAGGTGAAGTTAAAGTAGAGGATTTGGACTTAGAAATTTTCCCATCATTTTGCTTCTCTTCTCCATCAGTAGGGTCTGAAAACGAGGAAAACAACAACATCTTCCCTTACTCCATGATCGACAACAACTTATTGGAAAACTTCTCTCCTTCATTCATGTCTACAACAACAACTTCAGAATCAGACATGTTCTTCAACTGGGAGAGCACTGGACTAGGCCAAAGCGTGCATAACTCCACTTCAGATATCACTGATATAGTTTCCACACCAACTTCAGTCACCTATTCATCAATAATGGACCTTGATATCTTCCTTGATAAGAACGATTTCGACACAGATTTTCCTATGAACACCAGAGAACTTTGCATTTGA


Promoter Sequence:
>Vu_36644::LG11:27271123-27273123(-)
ATATGCATGCAAATCAGTCACATGGGAACAACGATACAAAAAAGCTTAAAAAAAATTGATTGGATAAATATCTTATTTTTCTCAGCTTTACTAAAACAATTTCAAATTGAAAAGAACGAACAAGTAAATTATAAAGAGATGATTACTTCTATAAAGTAAAATTAAAATAGTTAAGTTCTTCTATCTGACTATTTTTTAATCTTAACTAATAAATTATACTTCATCCTATTAGTTTACTCTACTTTACTTTGTGATTACATATTTAAATTATAATTTTATAAAAATTACTCGTCTTTATATAATTCAATGCAAACTAATGAAAACCGTCATTATCCAAAAAGAAACTTACTTTAAGTGCGAATGTTTTTTTTTTTTTGGTAAGTGTAAATGCATATTGTTTTTAAGTTTTCAAATTATAAGTTCATTCAAAATATTAACACAGTAAAATTTGCAATTAGGATTTTTTTTTAATTTTCTTCATATTAATAGCAGCATTTTTCTTCTTATACATTTGTGTTAGGAAAAGATACTTATATGAGTGTTGATGTTTTTGTCTGAGTAAGTCATGCAGCTCATTGTTGACCATTGTATTATATAAGTATCAAATTGTCTATCAAATTGTGCAAATATATTTGTAATTTTGTGATATCAACTTGAATTTGTTGGTCAATATGCTGAAATGAATATTAGGTAGAAAATTAGTCACATGAATCATTATTTGCCTGCAACATCCAACTAGTGGTATTCTTTCATTTTGCAGCTGAATCTTCCAAAGTGTGCATAAAATAATTTTTAGACCTCTTGTCATTCAATGTTCAATTGTTTAAATTTTGAGTTGCCAATTTAATTATAGATATATTACTAAATGACACAACTATGTATAATTAATTATATATTAAGGACCAAGTTGGAGACTTATTTGTGCGAATAAAGTGTCCTATAATTATTTATATTAAAAAATTAATGTCATTTTTGACATGTCTTTGTGGGTACTTTTCATACCTTTTAAATTATTACAGCTTATAACTATAATAAGTTTTTTGCACTTGTAGAATTATTATAAATTTTTTACATAACAGAACGTAAATCTTGCATATTAAATCTTAAATCATACAATTTTTCCACCAGACATCACATGGCTTTCAATGTTTTCTTCTGCAGAGTCACACTGTATATAGATTCGTGTAGCACTCTATAAAAACATTTTCTTTCAGCCACCAATCTTTAAAAAAAAAATTCTCATTTTTAATTAAAAAAAATTGTATTAAGAAAACCAATTAACATCTTTAAATTGTATTATTCTCTTAATAATTTTTAATGTTTTTTTCATAAATGAAAAGTAGATAAAAATATCATTTTTAGCTAAAAATAAAGAGTATATTAGAGATAGTATTTAATATTCCTCAACTAAAAGCCATAAAAGTGGTCTTTATTTAAATACTTCCAAATTAAAAATTATATAAAAATGCTCTTTATTTAAATACTTCCAAATTAAAAAATTATATAAAAATGGGACGAGACTCTTTCCAGGAAAGACCACGTCATCACCCCACCATTACACTTTTGATGGCTCAACCAATGTAAGTTAATAAAATATGTCACGCCACCATATAACTATCAAAATCAACGTAAGCAAAATTTTACACGTTTTGCATTTTGCAATGATAATATAAATGAATTTAAATTTCTTAACTTATTGAATTTTGATTAAAGTCTGATAGTTTCTTTTTCGTTCCTTCAAAATTTTCAATATCTAATAGTAATATTATTTTTCAAGTAATCATTTAACTTATTCAATGTATCGGTATTAGAATTTCAAATTTTAGAAGCATTAAATTAAAATACAAGAAAAGTGTTAGAATATTTTAAAACAGAAGATACAACCAAGAATCTTCAACCCTTCTTCCGCGTTATTGTTCACTACCCCTGGGATGCGTACGTCACCGCGTTTGAGCTTTTTATAATTACCCATCGTAGGGTTCAAGAGATGAGGTCGATGT


Gene Sequence:
>Vu_36644(-)
GGGACATTCTTATTTTTTGAAGTGGTCAATAATTCAATCAGGATATTCATGGATAACTCTTCCGTTCACTTTTTTAAACTTACATTTGTTTGAGCAGTCAAATCTACCTCTTTTTCCTTCTCCTTTCTCACCCTTAAAACCCCCCTTCCTCTCACCTTCTTTGTTAAGAAAGCCTCCTCTTTTTCCTATTTGATTCACACTTTCACACTCTCTAAGACCAATCCCTTATATCCCCTCCACTCAGCACAACATAACTCGCCACTTCACCAACAATTTTTCACTCCAATATCCCACTTTTGTAACTTTTATGAATGATCCATTTGGCATCCTTTTTGGATATAACTTCCTTCCCCTACTCATTTTCTTTCAGAGTTTCTCTGCAAAACTTTAATTTCTTGTTATTGGTTCTTCTCAACAAATGGAAGAGAGTGCGCAGTGCGAACAAGTTAGTGTCATTGATGAGTTGCTGCTAGGGAAGGAGCTCACAAAGAAGCTTTGTGAGCAACTATTCTCATCTTCCTCTTCCTCATCATCATCCTCCTCCTCTTCTTGTGACACAAATGAAGTCTTGATTGAGAAAATAATTTCCACCATGGAGAAGGCACTTGCCAAGGTGAATTGTATGGCTAATGTAGGAGAAAGTAAGGCCATGATGGATTCCCATTGCTCTTTCACAAATGGTAGTCCCAAAAGTGAGGTCGTGGAGCCTGAGGTTGAGCACAAACATGTCTCTAAGAAAAGGTAATGTCAAAAGTGCTTTTTGAAAATTATTGTTTCTTTTGGACATGGGGTGAAAAGGTTCATGGTCTGATTTCAAAAGGGGTGTTCTTTGAATCTGTGGAATGCAGAAAGACCATGCCAAGGCGGAGAGAGCAAGTGGAGGTGTGCTTGGGAACAGAAGGAAATAAGGAAGATGGCTATAGCTGGAGAAAGTATGGGCAGAAGGACATTCTTGGAGCAAAGTTTCCAAGGTAAAAAATTGTTTTTTTCTCTTCAAACATGCATAATTGAAGTGTTCTTTTTTACCATAATGAAAATTTGCACAATTTCTAATTTGAATATGACATGTTTAATCAGAGAAAGTTCACCTGTTTAACCTTTTGATATTACTATTATTTTGGTAGGTACCCTCTAACCAAAAGAACAAATATCATTGGCCAGTTAGCCAATGAAGTCTAAAGAGGAAATAAAAAACCAAATTTTAGCACGCCTAGGCCCTTGTTCCCTCTTTCTAACGTTTTCACTTTACAGCCACTTAATGAGTAGGACAAAGTGATTTTAAAAAGACAACAAAAACTTACCCAAAGGACAATATTAGCTAGATTGAATTCACTACAATAGCAGCTTTTTAATAAATGCAGTCTTTTGTGGCCGAGGCTTCACCATGTGAGGTGCAAGAAACTGTTGATCCAGTCATAAATTAGAAAAATCTGACAATCTTATCAAGTTGCCGAGCTTCTAGCTTTATTATGGTCTTAAAAACTTGGCAGGTACTTTTTTTTAAGCATTGAAAACAGTACTCATATTCAAGCCGAATTCACAATTGTACAATAGGAGGCAGATAAAAAATATGTCCTGAACACCCCTTTTTGGTATAAGCTAAAAGTTTAATGCTTTTACCAAAAAGACCACAAAACCAGTTCAAAATTGTTAGTTTTGATGTTACCTGTATCATCAGCATGCAAAAAAGTGCACTGTCACGTTAATTCTTCCACTTACTGAAGTGTTTTTTACATTGAAGCGATCCTCGGTCATGTTTTTTTCTGACAAAACAGTGGTTTTTGTTGCAGGGGATATTACAGATGCACATATAGAAATATACAAGGATGTCTGGCCACTAAGCAAGTGCAAAAGTCAGATGAAGATCCAATGATATACGAGATAACATACATAGGAAGACACACATGCACCCAAGCAAGTCACTTGAAAAAGACAGCGGTGCCCCCATCAAAAACCAAGGTGAGAATCGAAGAAAACGAGCACCAAACCAATGAAAAGAATCAACCACAACAAGAGAAAATAGAGCAACCCCCAGAGACAATTTTCTCCTTTGGATCACAAGGTGAAGTTAAAGTAGAGGATTTGGACTTAGAAATTTTCCCATCATTTTGCTTCTCTTCTCCATCAGTAGGGTCTGAAAACGAGGAAAACAACAACATCTTCCCTTACTCCATGATCGACAACAACTTATTGGAAAACTTCTCTCCTTCATTCATGTCTACAACAACAACTTCAGAATCAGACATGTTCTTCAACTGGGAGAGCACTGGACTAGGCCAAAGCGTGCATAACTCCACTTCAGATATCACTGATATAGTTTCCACACCAACTTCAGTCACCTATTCATCAATAATGGACCTTGATATCTTCCTTGATAAGAACGATTTCGACACAGATTTTCCTATGAACACCAGAGAACTTTGCATTTGATCAATTGTCTCACAAGTTAACAGCATATATAATTTATATGCAGATTAACAGCGAGCTTTGTAGATCCTGACTACCATCATAACCGAGGAAGCCGGTCTTTGAAAATCATAGTGTCCAGAAGACAGTAAAATTTCCCTCTCTTGCTGGTTAAGAAGAATTTTGGTGTAAATGTGAAAATAGTTTGCAGGTTGTAGCTAGCTGTAGTCTTTTGTTGTTTCTCTCTTCAGTGGTAGCATGATCAAGTATCTTCTTCTGGTTCATACAGCCAAAAATTTTTAAATAAATGAATTTTTACCTCCATAC