Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36635 LG11 27126457 27129385 PREDICTED: probable serine/threonine-protein kinase gdt4
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 27126613 synonymous_variant p.Leu53Leu
T/A 27126792 missense_variant p.Asn112Lys
T/G 27126799 missense_variant p.Cys115Gly
C/T 27126804 synonymous_variant p.Cys116Cys
C/T 27126981 synonymous_variant p.Asn175Asn
A/G 27127029 synonymous_variant p.Lys191Lys
C/T 27127326 synonymous_variant p.His290His
G/T 27127711 missense_variant p.Gly419Cys
G/T 27127835 missense_variant p.Arg460Ile
A/G 27128003 missense_variant p.Tyr516Cys
T/A 27128004 stop_gained p.Tyr516*
A/G 27128357 splice_region_variant&intron_variant
A/G 27128401 downstream_gene_variant
C/T 27128439 downstream_gene_variant
A/C 27128469 downstream_gene_variant
A/G 27128562 downstream_gene_variant
G/A 27128570 downstream_gene_variant
A/G 27128594 downstream_gene_variant
A/G 27128597 downstream_gene_variant
C/T 27128819 downstream_gene_variant
G/C 27128826 downstream_gene_variant
T/G 27128921 downstream_gene_variant
G/A 27128936 downstream_gene_variant
T/A 27128941 downstream_gene_variant
C/T 27129013 downstream_gene_variant
C/A 27129157 downstream_gene_variant
G/T 27129166 downstream_gene_variant
A/T 27129204 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36635.1
MEQFRQIGEALGALKSVMVFRENIQINQRQCSLLFDVFNSAYECIADEITQNLQFEEKNVKWKILEQPLREIHKIFREGETYIRQCMETKDWWAKAITLCHNTDCVEFHIHNLLCCMPVVIEAIESAGETSGLDQEEMQRKKYINSNKYKKEYRDMKLFQWKFGKQYLVTQDLCNRYDSVWKEDRWFLYNKLLEKKVEGVTKYEKKLIDLLLRNLEIAESVAGRLLPSSILVGSKDFQVRRRMGNASQYKEISWLGESFVIRHFTGDIEALQPEIIELLSLSHPNIMDCHGGFTDEEKKECFLLMELMSKTLSTHIKEIHGPRRRIPFLLHVAVDIMLQISRGMEYLHSKKVYHGELNPSSILVKPRGASPEGYLHAKVTGFGLTSVKDLNQKGNTNQNGTPPFIWYSPEVLEQENSGGTPNSKYTEKSDVYSFGMVCFELLTGKVPFEDSHLQGEKMSRNIRAGERPLFPLNSPKYVINLTKRCWHIDPHQRPSFSTICRVLRHIKRFLIMNPGYSSQPEQPVPPIDYCDIESLLLKKYPSWGSSEPAPVSIIPFQMFSYQVIEREKITSCCKDNSESGSDASACGDELVTSGDEPFPSTAERKSLLGNDIMNRKIIMPRKSLDLKLIKQPGTSKWRSARPPQMSPRARSMRITSENNISSPRAMRRVSSGHVSDSELS*


CDS Sequence:
>Vu_36635.1
ATGGAACAATTTAGGCAAATTGGGGAGGCACTGGGGGCTTTGAAATCTGTGATGGTATTCCGGGAGAACATTCAAATAAATCAGAGGCAATGTTCTCTGCTTTTTGATGTGTTCAATTCTGCCTATGAGTGTATTGCAGATGAGATTACACAGAACTTGCAATTTGAAGAGAAGAATGTGAAGTGGAAGATTTTAGAGCAACCCCTGAGAGAGATCCATAAAATTTTCAGAGAAGGTGAAACTTACATTAGGCAATGCATGGAAACAAAGGACTGGTGGGCGAAAGCCATTACCTTATGCCACAACACTGATTGTGTTGAGTTTCATATACACAATCTGCTTTGTTGCATGCCAGTAGTAATTGAAGCCATAGAGTCTGCAGGAGAAACATCAGGGTTGGATCAAGAGGAGATGCAAAGGAAGAAGTACATAAACTCTAACAAATACAAGAAAGAGTATAGAGACATGAAGCTTTTCCAGTGGAAATTTGGGAAGCAGTACCTCGTCACTCAGGACTTATGCAACCGTTATGATAGTGTTTGGAAGGAAGATAGATGGTTTCTTTACAACAAACTCCTAGAAAAGAAAGTGGAAGGTGTGACAAAGTATGAGAAGAAATTGATAGATTTGCTTCTGAGAAATTTGGAAATAGCAGAATCAGTAGCAGGGAGGCTCCTTCCAAGCTCAATATTAGTTGGGTCTAAGGACTTTCAGGTGAGGAGAAGAATGGGGAATGCGAGTCAGTACAAGGAGATTTCATGGTTAGGTGAAAGCTTTGTGATAAGACATTTTACTGGGGACATTGAAGCTTTGCAACCTGAGATCATAGAACTTTTATCTCTTTCCCATCCAAATATAATGGACTGCCACGGTGGTTTTACCGATGAGGAGAAGAAAGAATGCTTTTTGCTAATGGAACTCATGAGCAAAACCCTTTCCACCCACATCAAAGAGATTCACGGTCCAAGAAGGCGAATACCGTTCTTGCTTCATGTAGCAGTTGATATCATGCTTCAGATTTCCAGGGGAATGGAGTATTTGCATTCAAAAAAAGTATATCATGGAGAACTAAACCCTTCAAGCATTCTTGTTAAGCCTAGAGGTGCATCCCCAGAGGGTTACTTGCATGCCAAGGTAACTGGATTTGGACTAACTTCTGTCAAGGATTTGAATCAGAAAGGGAACACAAATCAGAATGGAACTCCCCCATTCATCTGGTACTCTCCTGAAGTACTTGAGCAGGAAAACTCAGGAGGCACACCAAACTCCAAGTACACAGAGAAATCTGATGTGTACAGTTTTGGAATGGTTTGCTTTGAGCTTCTAACTGGCAAAGTCCCTTTTGAAGATAGTCATCTCCAAGGGGAGAAAATGAGCAGAAACATAAGGGCAGGAGAGAGGCCACTTTTCCCACTCAATTCACCCAAATATGTCATTAACTTGACAAAGAGATGTTGGCATATTGATCCACATCAACGTCCAAGCTTTTCTACCATATGTAGAGTTCTTCGTCATATAAAAAGATTTCTTATTATGAATCCTGGTTATAGTAGTCAGCCAGAACAACCAGTGCCACCAATAGATTATTGTGATATAGAGTCACTGCTTCTGAAGAAGTATCCTTCTTGGGGAAGTTCTGAACCAGCACCAGTATCAATAATCCCATTTCAAATGTTTTCCTATCAAGTTATAGAACGAGAAAAAATAACTTCATGCTGTAAGGATAATTCTGAGTCTGGAAGTGATGCTTCAGCCTGTGGTGATGAACTTGTTACCTCAGGGGATGAACCGTTTCCATCCACAGCTGAAAGGAAGTCTTTGCTTGGAAATGATATTATGAACAGAAAAATTATTATGCCCAGGAAATCTCTTGATTTGAAGCTCATCAAACAACCAGGCACATCGAAATGGAGATCAGCAAGACCTCCACAAATGTCCCCTCGTGCAAGAAGTATGAGAATTACATCAGAGAACAATATATCAAGTCCAAGGGCAATGAGAAGAGTATCTTCTGGTCATGTCTCAGACTCTGAGCTTTCTTAG


Promoter Sequence:
>Vu_36635::LG11:27124457-27126457(+)
TTATAATATATAAGTGAGATGAATAGGGTGCAACCATGGTTGAAGCATATGGTTTTATGAGATTGAATTAGGTTTAAAGTTAATTTCTTAACATGATATCAGAGTCATGTTTAAAGTCTATCTTAACGAGATCTATGTGAACATTTTGTTTCACCCGCTATCGAGCCGTTATCGGGCCACCCATTAATTTGTACTCTTACGCTCGAGATGTCTATACCTCGACTTGAAAGGGGTGTGTTGGAAGTCTCATCATGAAATTTACACCCCACTTATATATATTATAATTTGAGATTATCTCTAGTCGATGTGTGACTTCCAAGATGTGATTTCTATATAAATTTTCTCAAAATAATGCACAATATAATTTAAAAGATTGTGTTTATGTAATCATACTAATATTCTCCAGAAACTTGTATCAATGCACATATCGAATTTGTAACGTTAATTCTGAAACCAATTAGATCAAATATTTACCAATAGACTAAAAGATACATTGGATAGTCAAAATATAATTTTTTTAAGAATGTAATAGTTCAAATATCACAATTTGATTGTGACAATTGTGACTTAGTTTACTTGTGTCACGGAACAATGTATCTTAAAAAAATTTAATTATCATTAGATCACAATAATAAATTGAAATATTTAAAGTTAAATTATTCATAAATATGTGATCTAAACTATTTTACATTTTATTAAAAACATGGTTTAAACTATTCATGTTTTAATAATTTTTGCCTTTAATTATTTACGTTTTCAATAAAAAAAACATTTTTTCTATACAATATGGACTAAAGGGCAAATAAAATTCAGCATATAACGAACAATAGATAACCACAACTTATTTCTGTTTTAAATAATGATTTTTTATTCTTTTTCGTGTTACCTAATCTATAAAATAGTATAATATATATTATAGTTTGTTGTAAAATTATGTGTCACATAATAAATATTCCACAAGTCTGAAATATTTTTTACATCATTTTCATTATGTGAGAATGTTTTGGATCAGTTATATTAAAAATACATAAAATGTTAGACGAAATATTTTATAATTTACTTTTATGAGCAAAATACATTTTTTTTAAAGTTTAAGAATTGAAAAACATATTTAATCTTGAAAAATATATTTCATATTTTCTTTAACTCTAATATTTAACTAGCCCTGACCAATGAAAAATCTCTAATTTTTGTCATACCTGTTTATCTTTTACACATTGTTTTTTATCTCGTTTTCTTTTTCCTATAAATTTACTTCCATCATCCTCAGTTTACAACAGTTCATATAATTTTTTAGACAATGTAAAAATCAATATGTGTTGAGGCACTCTAAACAGATCCACTACTACTTGCATGGCTAAGATCGAAGCTTTAGGTTGATTTGTCATTTGGATGTTGGCATGGTTGAAAGAAAGAATCGGTCATTTCAAACAAACCAGACAGATCCTTTAAACTCGCAAGGAATACTGTCACCCCACATAATCTATCACAATCAATGTTTGAGAGGTCAAGCTCAAGCTCATCAACATTCTAATCTTGTACCATAACTCATGGTTAATATTACAAACTTAAACATTTTACCAATTTTTTTCATTTTTCACTTTTAGGTTTTGCTTCCTTACAATTTTCATTCTTATGCCAAGATTGTTTGATTCTCTAGGAAAGTTGGTGGCATCACCTCTTGCATAGAAAACGCATAATTCATTTTTTGTTTCTATTTTCTTTTTAATCAAATCTTGAAAGGAAAGAATTCTGCTTTAGTTTATGTACAATTTTGATGGTGCTTGAATCTGCATAAGCTTTACTCGAGAAGGAGCTTGTGATCTCAATCTCCTTCTTTGTTTTCATTTTGTATTGCTCTCCACCGTTCTTATCTGGTTAGAATCTAAAAACTCATTGATGAATTACATTGGTTTCTGACTTGAATGAATTGAATTCATATTTCAAATTCGTCTCTCCTCTTTCTTTTCAGGGTTTATTTTAGATCAAAACCAGAGTTA


Gene Sequence:
>Vu_36635(+)
ATGGAACAATTTAGGCAAATTGGGGAGGCACTGGGGGCTTTGAAATCTGTGATGGTATTCCGGGAGAACATTCAAATAAATCAGAGGCAATGTTCTCTGCTTTTTGATGTGTTCAATTCTGCCTATGAGTGTATTGCAGATGAGATTACACAGAACTTGCAATTTGAAGAGAAGAATGTGAAGTGGAAGATTTTAGAGCAACCCCTGAGAGAGATCCATAAAATTTTCAGAGAAGGTGAAACTTACATTAGGCAATGCATGGAAACAAAGGACTGGTGGGCGAAAGCCATTACCTTATGCCACAACACTGATTGTGTTGAGTTTCATATACACAATCTGCTTTGTTGCATGCCAGTAGTAATTGAAGCCATAGAGTCTGCAGGAGAAACATCAGGGTTGGATCAAGAGGAGATGCAAAGGAAGAAGTACATAAACTCTAACAAATACAAGAAAGAGTATAGAGACATGAAGCTTTTCCAGTGGAAATTTGGGAAGCAGTACCTCGTCACTCAGGACTTATGCAACCGTTATGATAGTGTTTGGAAGGAAGATAGATGGTTTCTTTACAACAAACTCCTAGAAAAGAAAGTGGAAGGTGTGACAAAGTATGAGAAGAAATTGATAGATTTGCTTCTGAGAAATTTGGAAATAGCAGAATCAGTAGCAGGGAGGCTCCTTCCAAGCTCAATATTAGTTGGGTCTAAGGACTTTCAGGTGAGGAGAAGAATGGGGAATGCGAGTCAGTACAAGGAGATTTCATGGTTAGGTGAAAGCTTTGTGATAAGACATTTTACTGGGGACATTGAAGCTTTGCAACCTGAGATCATAGAACTTTTATCTCTTTCCCATCCAAATATAATGGACTGCCACGGTGGTTTTACCGATGAGGAGAAGAAAGAATGCTTTTTGCTAATGGAACTCATGAGCAAAACCCTTTCCACCCACATCAAAGAGATTCACGGTCCAAGAAGGCGAATACCGTTCTTGCTTCATGTAGCAGTTGATATCATGCTTCAGATTTCCAGGGGAATGGAGTATTTGCATTCAAAAAAAGTATATCATGGAGAACTAAACCCTTCAAGCATTCTTGTTAAGCCTAGAGGTGCATCCCCAGAGGGTTACTTGCATGCCAAGGTAACTGGATTTGGACTAACTTCTGTCAAGGATTTGAATCAGAAAGGGAACACAAATCAGAATGGAACTCCCCCATTCATCTGGTACTCTCCTGAAGTACTTGAGCAGGAAAACTCAGGAGGCACACCAAACTCCAAGTACACAGAGAAATCTGATGTGTACAGTTTTGGAATGGTTTGCTTTGAGCTTCTAACTGGCAAAGTCCCTTTTGAAGATAGTCATCTCCAAGGGGAGAAAATGAGCAGAAACATAAGGGCAGGAGAGAGGCCACTTTTCCCACTCAATTCACCCAAATATGTCATTAACTTGACAAAGAGATGTTGGCATATTGATCCACATCAACGTCCAAGCTTTTCTACCATATGTAGAGTTCTTCGTCATATAAAAAGATTTCTTATTATGAATCCTGGTTATAGTAGTCAGCCAGAACAACCAGTGCCACCAATAGATTATTGTGATATAGAGTCACTGCTTCTGAAGAAGTATCCTTCTTGGGGAAGTTCTGAACCAGCACCAGTATCAATAATCCCATTTCAAATGTTTTCCTATCAAGTTATAGAACGAGAAAAAATAACTTCATGCTGTAAGGATAATTCTGAGTCTGGAAGTGATGCTTCAGCCTGTGGTGATGAACTTGTTACCTCAGGGGATGAACCGTTTCCATCCACAGCTGAAAGGAAGTCTTTGCTTGGAAATGATATTATGAACAGAAAAATTATTATGCCCAGGAAATCTCTTGATTTGAAGCTCATCAAACAACCAGGTTACCTTCTGAACCTTTTGCTGTTATTCATGCAATTATAAAATACGACAGTTGATGATTTTAAGGAGCTAATTAAACTTCCTGCCATTATCAACAATGTTTTCTGCTGTTATGGAAAGTTTGTGAATTTCTTTTTCATTAATCAAAAGTTGCATACTCCTGCACGCTAAGGATACAAAAATACCTGCTTATTTGGAAGAAACCAAGGAAATTTCAGAAGTATTCTAGCCATAATAGATTATTATTTCTAACATATGTACATTGTTTGAGAAAATTTTCATGTCAGAACGATTTAGAAATGTTGTAATTGAGTTGCATATAGAAATTTTCGTGTCAGAACGAGTACCAAGAACTTTGAAAGCCCAAAAATCCACTTTCACAAACTGTCATTACATGACTCTAATTGTCCTCATTTTACCAATTTTTTTATAGTACAAAAGAGGACTACTGCTATGGCACACTTTTCAATAAAGTTTATTAAGAAACTGAAATACAAATTAAGGGTGAGTTTGGTTTTTCATTTTGAAACTGCAACTAAACAAGTTTGATCACACAAGTGGTAGAGAGTGCGAACTTGGGAGAGAGGTTGAATAAGATGTGAATTCTTTTCAAGTACTCTTGGAAAATATCTAAACAAAATAAATTTGGAGTGAGAAATTCTTTGTTGAAAATGTGAAATTATTTTTAGAAAACAGTTTTTAGAACTAAAAGGTAGGAAGAAAATCAAACAGAAGTAAATGATGGGAATCCTACTTCCTATGTATTGAAAACATTTCTCAAACATAAACCTGTCTTCAACAGGACAAAGAGGGGGTGTTAAGGAAGAGGAGCTTCACTTTTATATAATTGCAAATTGTTTCTGAACTTGATGTGTTTTTTAATGTAGGCACATCGAAATGGAGATCAGCAAGACCTCCACAAATGTCCCCTCGTGCAAGAAGTATGAGAATTACATCAGAGAACAATATATCAAGTCCAAGGGCAATGAGAAGAGTATCTTCTGGTCATGTCTCAGACTCTGAGCTTTCTTAG