Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36610 LG11 26848306 26852803 common plant regulatory factor 1-like isoform X2
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 26848474 5_prime_UTR_variant
C/A 26848484 5_prime_UTR_variant
C/T 26848493 5_prime_UTR_variant
A/T 26848496 5_prime_UTR_premature_start_codon_gain_variant
G/T 26848505 splice_donor_variant&intron_variant
T/C 26848515 intron_variant
G/A 26848619 intron_variant
T/G 26848646 intron_variant
G/A 26848682 intron_variant
C/T 26848753 intron_variant
A/G 26848849 intron_variant
G/T 26848866 intron_variant
T/C 26849014 intron_variant
T/A 26849025 intron_variant
G/A 26849067 intron_variant
T/C 26849164 intron_variant
C/A 26849177 intron_variant
T/A 26849296 intron_variant
A/T 26849305 intron_variant
G/A 26849317 intron_variant
A/G 26849405 5_prime_UTR_premature_start_codon_gain_variant
G/T 26849410 5_prime_UTR_premature_start_codon_gain_variant
C/A 26849466 missense_variant p.Gln11Lys
A/G 26849534 intron_variant
A/T 26849603 synonymous_variant p.Thr27Thr
A/G 26849689 intron_variant
A/C 26849693 intron_variant
G/A 26849695 intron_variant
A/T 26849701 intron_variant
T/C 26849702 intron_variant
T/A 26849727 intron_variant
T/C 26849738 intron_variant
G/T 26849752 intron_variant
A/T 26849786 intron_variant
G/A 26849835 intron_variant
C/T 26849876 intron_variant
A/T 26850066 intron_variant
T/C 26850087 intron_variant
T/G 26850268 intron_variant
C/T 26850307 intron_variant
G/T 26850349 intron_variant
C/A 26850473 missense_variant p.Pro110Thr
T/G 26850487 splice_region_variant&synonymous_variant p.Ala114Ala
T/G 26850514 intron_variant
A/C 26850534 intron_variant
A/G 26850540 intron_variant
T/A 26850665 stop_gained p.Leu139*
A/G 26850668 missense_variant p.Lys140Arg
C/A 26850790 intron_variant
G/C 26850851 intron_variant
G/C 26850858 intron_variant
G/A 26850863 intron_variant
G/T 26850944 missense_variant&splice_region_variant p.Gly184Val
A/G 26850952 splice_region_variant&intron_variant
T/C 26850956 intron_variant
T/C 26850976 intron_variant
C/T 26850983 intron_variant
C/G 26850984 intron_variant
G/C 26850987 intron_variant
C/T 26850992 intron_variant
C/G 26850996 intron_variant
A/T 26851009 intron_variant
A/C 26851045 intron_variant
G/A 26851049 intron_variant
T/A 26851137 intron_variant
T/C 26851155 intron_variant
G/A 26851175 intron_variant
C/G 26851188 intron_variant
C/G 26851217 intron_variant
C/G 26851221 intron_variant
T/C 26851255 intron_variant
A/T 26851259 intron_variant
C/G 26851264 intron_variant
G/A 26851269 intron_variant
G/A 26851280 intron_variant
C/G 26851327 intron_variant
C/T 26851331 intron_variant
G/C 26851333 intron_variant
G/A 26851353 synonymous_variant p.Gly204Gly
G/T 26851393 missense_variant p.Ala218Ser
C/G 26851436 missense_variant p.Ala232Gly
G/A 26851438 missense_variant p.Gly233Arg
A/G 26851442 missense_variant p.Lys234Arg
G/A 26851443 synonymous_variant p.Lys234Lys
T/G 26851460 missense_variant p.Ile240Ser
C/A 26851478 missense_variant p.Thr246Lys
T/C 26851491 synonymous_variant p.Leu250Leu
C/T 26851497 synonymous_variant p.Asn252Asn
T/C 26851501 synonymous_variant p.Leu254Leu
G/T 26851507 missense_variant p.Val256Phe
G/A 26851530 synonymous_variant p.Thr263Thr
G/A 26851534 missense_variant p.Ala265Thr
C/T 26851536 synonymous_variant p.Ala265Ala
C/G 26851558 missense_variant p.Pro273Ala
C/G 26851581 splice_region_variant&intron_variant
G/T 26851584 splice_region_variant&intron_variant
C/T,* 26851602 intron_variant
C/G 26851673 intron_variant
G/A 26851685 intron_variant
T/A 26851687 intron_variant
G/A 26851743 synonymous_variant p.Arg289Arg
T/A 26851750 missense_variant p.Ser292Thr
A/C 26851804 intron_variant
C/A 26851845 intron_variant
C/T 26851878 intron_variant
C/A 26851915 intron_variant
A/T 26851924 intron_variant
G/T 26851965 intron_variant
T/G 26852045 synonymous_variant p.Thr319Thr
T/G 26852067 missense_variant p.Ser327Ala
T/C 26852148 intron_variant
T/A 26852172 intron_variant
A/C 26852178 intron_variant
C/T 26852239 synonymous_variant p.Leu355Leu
A/C 26852278 missense_variant p.Ser368Arg
T/A 26852292 synonymous_variant p.Thr372Thr
C/T 26852339 missense_variant p.Ser388Phe
C/T 26852343 synonymous_variant p.Asn389Asn
C/G 26852358 missense_variant p.Asp394Glu
G/A 26852366 missense_variant p.Ser397Asn
T/C 26852370 synonymous_variant p.Asp398Asp
A/C,G 26852373 missense_variant p.Leu399Phe
T/A 26852376 stop_gained p.Cys400*
C/G 26852399 missense_variant p.Ala408Gly
G/C 26852418 synonymous_variant p.Leu414Leu
G/C 26852419 missense_variant p.Asp415His
C/G 26852429 missense_variant p.Pro418Arg
G/T 26852454 synonymous_variant p.Gly426Gly
A/G 26852458 3_prime_UTR_variant
G/A 26852469 3_prime_UTR_variant
T/C 26852477 3_prime_UTR_variant
T/G 26852478 3_prime_UTR_variant
T/A 26852482 3_prime_UTR_variant
T/C 26852485 3_prime_UTR_variant
T/C 26852496 3_prime_UTR_variant
T/C 26852499 3_prime_UTR_variant
G/A 26852521 3_prime_UTR_variant
C/T 26852536 3_prime_UTR_variant
A/G 26852537 3_prime_UTR_variant
T/A,* 26852656 3_prime_UTR_variant
G/C 26852657 3_prime_UTR_variant
G/A 26852669 3_prime_UTR_variant
G/C 26852768 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36610.1
MGNSEEGKSVQTGSPSSPATTDQANQTYQPNIHVYPDWAAMQYYGPRVNIPPYFNSTVASGHAPHPFMWGPPQPMMPPYGPPYAAFYPPGGVYTHPAVAIGPHSHGQGVPSPPAAGTPSSVDSPTKLSGNTDQGLMKKLKGFDGLAMSIGNCNAESAELGAENRLSQSVDTEGSSDGSDGNTAGANQTKMKRSREETSTTDGEGKTETQDGPISKETASSKIIVPATPASIAGKFVGPVISSGMTTALELRNSLTVHSKENLTSAPQPCAAVPPEAWIQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITKLTEGSEQMRMENSAMREKLINTHLGQREEIILESIDSKRSTPVSTENLLSRVNNSSSNDRSADNESDLCENKPNSGAKLHQLLDTNPRADAVAAG*


CDS Sequence:
>Vu_36610.1
ATGGGAAACAGTGAGGAAGGGAAATCTGTTCAAACTGGAAGTCCTTCTTCACCAGCAACAACTGATCAGGCCAATCAGACATATCAGCCTAACATTCATGTCTATCCTGATTGGGCTGCCATGCAGTATTATGGGCCAAGAGTCAACATTCCTCCATACTTCAACTCAACTGTGGCTTCTGGTCATGCTCCACACCCATTCATGTGGGGTCCGCCACAGCCTATGATGCCACCTTATGGGCCACCATATGCAGCATTTTATCCTCCTGGTGGAGTTTATACTCACCCTGCAGTTGCTATTGGGCCACATTCACACGGCCAGGGAGTTCCATCTCCACCTGCTGCTGGGACTCCTTCAAGTGTAGATTCACCGACAAAATTATCCGGAAATACCGATCAGGGGTTAATGAAGAAATTGAAAGGATTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCAGAGAGTGCTGAGCTTGGAGCTGAAAACAGGCTGTCACAGAGTGTGGATACTGAGGGTTCTAGCGATGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAATGAAAAGAAGCCGAGAGGAAACATCAACCACTGATGGAGAAGGGAAAACTGAGACACAAGATGGCCCAATTTCCAAAGAGACTGCATCTTCGAAAATAATTGTGCCTGCTACTCCAGCTAGTATTGCAGGAAAGTTTGTAGGTCCTGTAATTTCTTCAGGTATGACCACAGCATTGGAGCTTAGGAACTCTTTGACTGTTCATTCTAAGGAAAATCTCACGAGTGCCCCACAACCTTGTGCAGCTGTGCCTCCTGAAGCTTGGATACAGAATGAGCGTGAGTTGAAACGGGAGAGGAGGAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGACTGAGGAAGCAGGCCGAGACTGAAGAATTGGCCCGAAAAGTTGAGATGTTAACTGCTGAAAATGTGTCACTGAAGTCAGAAATAACTAAATTGACTGAAGGTTCAGAGCAGATGAGGATGGAAAATTCTGCAATGAGGGAAAAACTGATAAATACTCACCTGGGACAAAGGGAAGAGATAATTTTGGAAAGCATTGACAGCAAGAGGTCTACTCCAGTAAGTACTGAGAACCTGCTATCAAGAGTTAATAATTCCAGTTCTAACGATAGAAGTGCAGACAATGAGAGTGATTTATGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTTGCTGCTGGGTGA


Promoter Sequence:
>Vu_36610::LG11:26846306-26848306(+)
ACGTACTGCTGGAAGAGACGCTGGAGGAAGAAAACCTAGTCGAGGTTGAAGTGAAGACCGAACAATAGGACGTTCGGTTAGTAGCTTAGTTGATTGTAAGGTGGTCGTTCGATCATCTTCCCTTTTTGTTTTAGTATGATCGTTCGGTATCTTCTTTTGTAAACCGTTCGGTGAGGAGTGTACCTTGTACAATTTTAATTTCTAGTAATGCTTTGTAAGGCCGTTCGGCCATAACTGTACGCTCTGTTTAATGTAAGACTGATTTGAGTTATTATTAGATGTGATTATTCAACTATATAGTTTTAAACTGTATTTTTGGGATGTTACAATTTTAATGTAATATATAATCAAATTGAATAATATTTTACAATTTAGTTTCGATTTGATCTTTTAATTTTATAACTATAAAATAATTAATATATTTATAAAATTATAAAATAAAAATATGGTGTTTTTTATAATTACTATGTTTGCCATCTAATTCGATAAATAAATTACTAATCTTGCCAAAAACTACTGTACATATTTCCATGTTTGCTACCATTGTTTCAAAATTATAGATATAATATAATTAAATATAAAAACAAATTTTGATAATCATATTTTTTTAAAGTAATTCTGAATATAATATTATATTTTAATATAGTAAGTAATTTAATTCGGTTTGCTTCAAAAAATATATAAATATAAAATTAAATGACAGATTTATTATAGCATATTATCAAAATGAAATCATAACTGAAGTATACCAAAAAAAAGTTAAAGTTAAGTATCTACATATATTAATTTTCCACTTTAGCACGTTTTATTTAGCATGTGTGAATTAATATATATATATATATATATATATATATATATATATATATATATATATATAACTATTATTCATAATTATTTATTTTACCAAAAGACTTAATTAATTATTATTCTTTCACTCAAATCTTTAACCTAATTTTTATATTGTTATGGTAAAAATATTCCATCAATATAAATATAAAAGCAATACATTTAAAAGGATTTCTACATTTATTTGCCAAATTTATCCTTACACAAAGTTTTTTAAATTTTAAAAAAATAACATATTATCAATTTTACCTTTTTCTAAATTTAATCGTATTTTTAGTTTCATCTTAAATTTAATAATTTTTCTAAGTATAAAACTATCTATAAAATAAATAAAAAATATTTATAATGAAGTTATAAATGATATTTATATTTAATTTTGTAAATATAATAATAATAAATTTATTATTATAAAAAATAATATTTGAAAGAAAAAGTTAATTCATACTTTTGTATGTCGTATTAAAGATTTGGATTGCAAAACACTTGTTAAATACGAGGAAAGAGTTATAAAAGTACATTTAACAAACAGTAAAACATATATCGAAAAGAATGAATTAAGAAACATTTAAATGCTAAAAGAATCTATAGCATATAAATTTCAAATGCAAACAAATTAATTAAATTTTATCTCATTTAATATGTTTATTCTTCTAAAATATTTTGTTTGTTATTCAATATATATTTATACTAATTTTTTTAATAACTATTTTATCATATACCTTCACAAGATAAATATGAACATTAATGGCTGTTTACAAATATTAACAGTACAATTACATTACATCAGCATTCATTTTAATAACATTTTTGAAAGAAAGATAATTTCAATCACGTAATATATCTATTAATTTTAGCGGTATAAATATCTTCTGATTAATTAATTAATAAAAAAGTATTTAAATCCAAAAGACACGTAAGCTCACATGACCGGATAAACTGGTGTGGACCCCACAAAAGATGACCACGTGTGCGATGTCAATGACACTGGAATAAATTAATGGCCACCTCAACAACCACCACACTCGCCCAACCTATCGTATATACGCGTAGGCATACGCAAGCTTCTGTATTAGACACGTGTGTGGTGACGTGGATATGGCCCCTTCTCTCTCCTCTCTTCCTTTTTCACCACCCCTTCCTTCTCTCTGAAACCC


Gene Sequence:
>Vu_36610(+)
CAAGCAAGCTCTTTCCCTCGTTTTTTAAGAGAGAGAAAGTAGATAGAGAACCACCGGAATTGTTTTTCCAAACCTTAATTTCAGGATATTTTCAACCCACCAGAACCAATTGTTGTTCTTTTTTTTCTTTTTCATTCTGGGATTTTCTTTTTCCTTGTTTTGGTTAAGAGTTTGATATCTTAATCCCCTCAGGTATCAGGTACGTAGAATTTCGGTGCTGTGATTCTAGCTCAGAAAGATTTGATTTTTATTTTTGGGTTTGAAGTTTTATGATTAGGGAAAAGGTGTTAGAAAATTTATAGAAACAAGGAACGCAAGCATAAGGTGGTTTTTGTTGATATACATATTTTTTTTCAAATATATGTTCTAGTTAATGGAGCAAAAGGATTAGAGTTTTGAATGCCCTGGATCTCGTGTTGTGTGAGCTAATTTATTTGAATTTGGTACCTTCTGCGCTTTGATTCTTGTTTTGCAATTTTTTGTTGTTGGGAATTTAGTTTTCTTCTATGAAATAGCTGGAAAAAAATAACAAGGGAAGAAGTGATGGTATTTTGGATCAGGGGTTAAGCCTGTAAATTGTAAAGTATGGAGGTTCAGGTAGCAAATTCTAGGAGTCTCAATACTCCTCTCTCAGCATGAGGGTGGAAAAAGATTTTTGATTTGGAGGGTTTTTTTGTCATTGTGCTCTCAGATTGTCCTTTTGGGTTTTATTTGTTATGTAATGCTTTGGTGGTTTGTGTTTATCGCTTTCTATCCATTGTGGGGTAACAAAAAGACATAGTTGACCCTATACCATTCTGTTATTGACTGAGTATTCATTCTGTCTGTGGTATTTTTTTGCAAGAAAAGAGCAATATTTGTTTGATGCTATCTGTATAATATTTACACCTGCATAATGTCAAACTGCAGTGGGTAATTTTGTAGTATGTGTTGTCTGAATGCTAACTATGTCATTAACAGAGTAAACCAACATTTTCAGTGATATTGTACTGTTGCTAGATAGAACCTTTTGTATGATATTTTAGTCTTTGCAACATTTTCTTGCTGACAACAACATAGCTTCTTTGAATGCAGCTGAATAACTTGTTGGGACATATTTAACTCGGTGCTTTTCTTCTGGTGATTGCCTCATGGGAAACAGTGAGGAAGGGAAATCTGTTCAAACTGGAAGTCCTTCTTCACCAGCAACAACTGTAAGCTGAGAACTGTTTATGCACTATGTGTGAGGACACATTTTATAAATAGTCTTCTTAAATACTTATTTCTAACCTTGTTGACAGGATCAGGCCAATCAGACATATCAGCCTAACATTCATGTCTATCCTGATTGGGCTGCCATGCAGGTTACCTACCTCTTGCCATCATTTCCTTTGTGCCTTAATTACACAAGTCTTCATGTCAAAGTCATTGTTTTAGCTAAATAACTTTAATGTAAATAAAATAACTGCTCTAAAAAATTTAGTAGTTCAAGTTTTATCCCAATAAAAGATTGTAGCACTGTAAATTCACTTGATCAATCAACAATTTTAGTTCATGTATTTCTATTTTTAGCTATTCTTAAACCAATGATCTGATGAAACCTATTATTTTTTTCCCACTTGCGAATTGCTAACCATTTTTGCCATATATTAGTATTATGGGCCAAGAGTCAACATTCCTCCATACTTCAACTCAACTGTGGCTTCTGGTCATGCTCCACACCCATTCATGTGGGGTCCGCCACAGGTAGTGCCCCCAAGAGACATTTATTTTGCTTTACCATTACCATTTCTATGCTTTTTTGGATGTTCCTGATATATATCTTAGATGGAAGGGATGAATAATTTGCCAACTTATTGTTTCTTGCAGCCTATGATGCCACCTTATGGGCCACCATATGCAGCATTTTATCCTCCTGGTGGAGTTTATACTCACCCTGCAGTTGCTATTGTAAGTGTACTTCTTATTTTAAATCTTTACTTTTAAGGGTTAGGAATATATGAAGACGGGATTCCTTTTTTCCTTGGTATTTTCATGTTATTCATATGTGGGTGCCTTTAAGCTGTTATTGACCTTTTGATTCTATGATCTTCTTAATGTAACAAACCTTCGTGATTGGAAAATTTCCTATGTACTCATAAATTATATTGGTATAATGTAGGGGCCACATTCACACGGCCAGGGAGTTCCATCTCCACCTGCTGTAAGTTTTTTATTTTCTCTTAATTGTCTTCTTAGTTTCTAATCTTATGCTTAATTCCCCGAATACTATGAATTATGATGAGTTGACATGGAAAAATGATGCAGGCTGGGACTCCTTCAAGTGTAGATTCACCGACAAAATTATCCGGAAATACCGATCAGGGGTTAATGAAGAAATTGAAAGGATTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCAGAGAGTGCTGAGCTTGGAGCTGAAAACAGGCTGTCACAGAGGTTTGTTGATCCAAATTCTTTCTATATGATTATTACCCGAATGAACTCTACTTCCCTCTTCTCCCGTGTAAGAGAATTTTGGTCCGAGAGTTATACTAGTAAGTCGATATGAGTAACTGAATAATTTTATGGTGATATGAACAGTGTGGATACTGAGGGTTCTAGCGATGGAAGTGATGGCAACACTGCAGGGGTGAGAACATTTTCACTATTAACATATTTTTTCTTGTCCTTGTGCACTAACAGTGTTTCATTTATAATGATTCTACAAATTGAAGAATTAAGTTTTATGATATGTTATAATTTTATGCTCAGGCTAATCAAACAAAAATGAAAAGAAGCCGAGAGGAAACATCAACCACTGGTATGACTCTAATAGTCCTATTCACTGTTGCATCTTGATGAATGATTGAGTTGTCTTGGATCACAATTATACTTTTGATGTCAACTAGATCATTGAGTATCGTACTAGGGTGTTGATAAGTTGATATTTGGATGGCCTTTTAAGCATCTTAAGCTATTCACTTGAGGAGTTAAGTTGTTTTTAATACGTGTTTTGACGGTTATATTTTATCACACTGTACAAGCAGATGGAGAAGGGAAAACTGAGACACAAGATGGCCCAATTTCCAAAGAGACTGCATCTTCGAAAATAATTGTGCCTGCTACTCCAGCTAGTATTGCAGGAAAGTTTGTAGGTCCTGTAATTTCTTCAGGTATGACCACAGCATTGGAGCTTAGGAACTCTTTGACTGTTCATTCTAAGGAAAATCTCACGAGTGCCCCACAACCTTGTGCAGCTGTGCCTCCTGAAGCTTGGATACAGGTCTGGTCAGATAATGGTTCATTCTAATGTTTTATCACGTTTAATACAGAGATGCTTGTGAAACATACTAGAATAATTATGCTGCACCCTCAATCTTTTACTGATGGTTAATTCTGTGTGTATCTAATTCCTTAGAATGAGCGTGAGTTGAAACGGGAGAGGAGGAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGACTGAGGAAGCAGGTATAAATTATTATATTGTTGACGTGCTAATCTTCCATAGTTTCTATTGTTGCCTGGTAAAAGACATGAATTGCTTGGTTTCTGTCCTATCTCATGCTTATTCAGTTCCGTGCATGTAGCCCTCAAAAATTGAAATTGAAAAACTAAATAGGAAAAGGGCTGATCTGACATGAGAAAAGTTGATGAATAATGCTCATATTTTCTCTGTTTAGGCCGAGACTGAAGAATTGGCCCGAAAAGTTGAGATGTTAACTGCTGAAAATGTGTCACTGAAGTCAGAAATAACTAAATTGACTGAAGGTTCAGAGCAGATGAGGATGGAAAATTCTGCAATGAGGGTATTGCTATAAATATTCTTTCATACTATTGTGACATTTCATTGGTATACTGTGATATTGATTGAGTTCTTCATTGATTTTGACTCAGGAAAAACTGATAAATACTCACCTGGGACAAAGGGAAGAGATAATTTTGGAAAGCATTGACAGCAAGAGGTCTACTCCAGTAAGTACTGAGAACCTGCTATCAAGAGTTAATAATTCCAGTTCTAACGATAGAAGTGCAGACAATGAGAGTGATTTATGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTTGCTGCTGGGTGAAACCAGTAATTGCACTGGCTTATTTTGTAATTTTGGCATATTACAAGTCCAAAATTACAGCTTGGTGCTAACAGTTTTCAGAGGGATGGATCAGCTGAGTTTTACAACCTAAATCCATCTATAGACCAGAACTAATTCTTTGCTTGTCAGTTTCTTAGGACATGAACTCTGTATTTTATTAGAATTGACAGAAATGGATGACAACTTTAAAGAAGTTTGTAAATTGATGAGTATTAGGGATCTAGCTTAGACTTTAAAGATAGGGTTCTCACACTCTGTATAATTGGTTGTGTATTAACTATATTGGTGTGAACTTTCCTATGGTATGAGTTGAGGTATTCTCACA