Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36400 LG11 23141688 23146409 PREDICTED: shaggy-related protein kinase theta
Map

Annotations  
category   relationship type   keyword
Pathway   B 09191 Unclassified: metabolism   C 99980 Enzymes with EC numbers
SNP Position Effect Amino acid change
T/C 23141812 5_prime_UTR_variant
G/T 23141832 5_prime_UTR_variant
A/G 23141855 5_prime_UTR_variant
T/A 23141915 5_prime_UTR_variant
G/A 23142047 intron_variant
G/T 23142053 intron_variant
T/A 23142070 intron_variant
T/C 23142082 intron_variant
G/T 23142083 intron_variant
G/T 23142084 intron_variant
A/T 23142085 intron_variant
T/C 23142166 intron_variant
A/T 23142196 intron_variant
T/G 23142645 intron_variant
A/T 23142762 intron_variant
G/T 23142983 missense_variant p.Glu78Asp
G/T 23143101 intron_variant
A/C 23143159 intron_variant
T/A 23143236 intron_variant
G/A 23144127 missense_variant p.Ala251Thr
C/T 23144171 synonymous_variant p.Asp265Asp
T/A 23144215 intron_variant
T/C 23144216 intron_variant
T/G 23144282 intron_variant
C/A 23144290 intron_variant
A/G 23144415 intron_variant
A/G 23144476 intron_variant
T/A 23144482 intron_variant
A/T 23144484 intron_variant
C/A 23144599 intron_variant
G/T 23144607 intron_variant
A/T 23144623 intron_variant
T/A 23144639 splice_region_variant&intron_variant
T/C 23144663 missense_variant p.Ile298Thr
T/C 23144673 synonymous_variant p.Ile301Ile
T/C 23144679 synonymous_variant p.Ser303Ser
C/T 23144680 stop_gained p.Arg304*
C/G 23144695 missense_variant p.Pro309Ala
G/T 23144710 missense_variant p.Gly314Trp
G/T 23144711 missense_variant p.Gly314Val
G/T 23144712 synonymous_variant p.Gly314Gly
C/T 23144714 missense_variant p.Ala315Val
G/A 23144731 missense_variant p.Ala321Thr
G/A 23144749 missense_variant p.Val327Ile
C/T 23144766 synonymous_variant p.Ala332Ala
G/A 23144767 missense_variant p.Glu333Lys
T/C 23144771 missense_variant p.Leu334Pro
T/A 23144777 missense_variant p.Leu336Gln
A/T 23144800 intron_variant
C/A 23144803 intron_variant
C/G 23144819 intron_variant
A/C 23144826 intron_variant
A/T 23144841 intron_variant
G/C 23144842 intron_variant
C/T 23144849 intron_variant
T/C 23144852 intron_variant
A/G 23144860 intron_variant
T/A 23144862 intron_variant
A/G 23144871 intron_variant
G/C 23144880 intron_variant
G/A 23144892 intron_variant
A/C 23145000 intron_variant
C/A 23145007 intron_variant
T/C 23145008 intron_variant
C/A 23145012 intron_variant
G/A,* 23145120 intron_variant
T/A 23145137 intron_variant
G/A 23145145 intron_variant
A/G 23145151 intron_variant
G/T,A 23145177 intron_variant
T/C 23145182 intron_variant
G/C 23145195 splice_region_variant&intron_variant
T/C 23145205 missense_variant p.Leu357Ser
C/T 23145244 missense_variant p.Pro370Leu
T/A 23145266 missense_variant p.Phe377Leu
A/C 23145328 intron_variant
T/G 23145398 missense_variant p.Phe389Leu
A/G 23145460 missense_variant p.Asn410Ser
C/T 23145507 intron_variant
A/T 23145654 intron_variant
C/A 23145775 synonymous_variant p.Pro439Pro
C/G 23145818 intron_variant
A/T 23145848 intron_variant
A/T 23145882 splice_acceptor_variant&intron_variant
C/T 23146008 3_prime_UTR_variant
A/T 23146118 3_prime_UTR_variant
A/G 23146219 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36400.1
MNMMRRLKSIASGRTSISSDPGGDSNSKRAKFEQETEVKPVEKSNIVETIITDQDQPVDAPKETTVGLSDVSTVARTEKSGYDELPKELNEMKIRDEKSKNNNDKDIEATVVSGNGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVMRTVDHPNVVKLKHCFFSTTEKDELYLNLVQEYVPETVYKVSKHYVRMHQHMPMIYVQLYTYQICRALNYLHQVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIRCMNPNYNEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDDLRDPNACLPNGRPLPPLFNFTSHELANAPEELRRRLIPEHARS*


CDS Sequence:
>Vu_36400.1
ATGAATATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCCATTTCTTCAGATCCTGGAGGGGATTCTAACTCGAAAAGAGCCAAGTTTGAACAAGAAACTGAAGTGAAGCCTGTTGAGAAATCAAATATTGTTGAGACAATCATCACAGACCAGGATCAGCCTGTTGATGCACCAAAAGAAACTACAGTTGGCTTATCCGATGTATCTACAGTAGCTAGAACTGAGAAGTCAGGCTATGATGAACTTCCCAAAGAATTAAATGAAATGAAAATTAGAGATGAGAAAAGCAAGAACAACAATGACAAGGATATAGAAGCAACTGTTGTGAGTGGTAATGGAACAGAAACAGGTCAAATAATAACAACTGCCATTGGTGGTCGGGATGGACAACCAAAGCAGACAATCTCATACATGGCTGAACGTGTTGTTGGCACTGGTTCTTTTGGTGTCGTTTTTCAGGCTAAATGCCTTGAGACTGGTGAAGCAGTTGCCATAAAGAAAGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACCATCCAAACGTTGTTAAACTAAAGCACTGCTTCTTTTCAACCACCGAGAAAGATGAATTATACCTTAACTTAGTTCAGGAGTATGTACCTGAAACTGTCTACAAAGTTTCAAAACACTATGTTAGGATGCACCAACATATGCCCATGATTTATGTGCAACTGTATACATACCAGATATGCCGTGCATTGAATTATTTACATCAAGTTATCGGTGTCTGTCACCGTGACATCAAACCCCAGAATCTATTGGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCCAACATATCATACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACTACCGCCATTGATATGTGGTCTGTTGGTTGTGTTTTAGCCGAGCTACTTCTAGGACAGCCATTGTTTCCTGGTGAAAGTGGGGTTGATCAGTTAGTAGAGATAATCAAGATCTTGGGAACTCCAACCAGAGAAGAAATAAGGTGCATGAATCCCAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCATCCATGGCACAAGGTTTTTCACAAGAGAATGCCACCTGAAGCTGTGGATCTGGTGTCAAGGCTGCTTCAGTATTCTCCAAATCTACGTTGCACTGCTTTGGCTGCTTGTGCACATCCATTTTTTGATGATCTGCGGGATCCAAATGCATGCTTGCCAAATGGGCGACCCCTACCTCCTTTGTTCAACTTCACATCTCATGAACTGGCAAATGCACCTGAAGAGTTGCGGCGCCGCCTCATTCCTGAACATGCAAGGAGCTGA


Promoter Sequence:
>Vu_36400::LG11:23139688-23141688(+)
AACGATCCTTCACCCATCCCTCCGTCATCCATGTGGAAAGCAACACGTATTTCGGCCAAATCACGATCTTCCTTTCTTACATACCACTCCAGATTTAACTGCACCAAACACACACAAGAAAATTTCGCAGATACGACAATCAATATTGACATAAAACATATAACGAAGGTTGAAAGACTTACATCTTCGGTCTGAAATATATGTTCAATTTTTTTAGTCCTTGAATTATACGGGAACCATCGCATTATGCACGGGAACATCCTGTGAGAAGCATGACCATGCAAAGAAAGTCTTTCAACCGCCCAAGCCTACAATATCATAATATTATTTAATGACACCTATTAAATAATGTTCTTCATTCCATTAACATAATAAACTATAAATCATGTTACCTGCAACGGCCACATTGCCACTAAGAGTGAGTGACTGTGCGATACCTCCTCTCATAATTTTCTTCATACATTTATTTAAATTCTGTACAATATGTTTATGTACACCAGTGCACCAATCGTATAGACACAAACTGTCTAAGTCATCTAACACTACAAAAGGCATGTTACAAACATGCCTTGAATTCCTAGGAAAATAAAAAGCAACCAAACAGACTAATATATATAATCTACATACTACATCAACCTCAATGTTTTTATCATGCACAATCACATTAAACATGTCCGTCAAATCCTTCAAACTGATGATTTTTGAATTAAACATTTCACCAACCAATCCAACTACTGATTCATCAAAGGGAATCTCTAAACCACCTATTTCTAAACCTGTGCTCATGAACACATCAATAACAGAAAATGGCACCAATTGTTGACTTACTCTAAAACTATTATCATGCCCGACCCACCGGCACACTATCACCTTCAATAATTTTAAATTGACATCCAAAGGGCTTAGAATGTTCAAACACCACCTAAATGGAGTCATCCTAATGCGCTCTACATGACCCTTTCCTAGTAAGCGATTCATTTCAATAATGATCGATGAGTCCATTGAGGTAAGAAGCCGCCACTACACAAAATTATGATTACTTTATTAATTACAAAACTTATGAGGATAAAACATAATCTATAAAAACAAAATTAAATTTTATCTCACACTTCGTTTTTGGGCTTCCATTGCACCTGCACCGACAAAACAACATTCCATACATGTTAAATCATTATGCTTAATGAAACACTATAACACAAATGTACAAAATACAGTTAGGGTTCGCGTAGTTTGACTTATAATAAAAACACAACCACAACAACAAAGGAAAAGAACAATGTGCCACGAAAACCAAAACGACACGAGCCTTCGAACGACAAAGAAGATAGAAGAATAGATGACACAACGACGGAGATGAAAGAAGTCATGCGGAAGTCCACAAAACTGTCACCACCCCAAATCGACACTAGGGTTCCAACGACGGACAAGATAGAAATGTTGGATGACACAATGAGAGTTTTCAACGAAATATAGAGACAACGATTGGTGGACAGAGCGTTGTTAAAAATTTCAAAAGCACGAAAACAATTTCGTAATCTTTCCTTTCCTATTTTGCCCTTCCACTCAACATTTTTTATTTTTTTTTATTATTTTTGGCCAATACAAAACCGCCACCTAACGTTGTCAAAACGTTGACAAATATATCTTCTCAAATAAACATTTTCGTTTTCCAAATATGCTTGGTTTATATTAGAATTTGAACACAGTTTTTGAGTCACAGGATATTCCGTTTAAGCATTGAAACTGTGGTCCCCTTTTCGTAAATAAACGCCAAAACTAAGGGCATTTTCATATCCGCAAGCCACCAAACCCAACCTTTACTTTATCTCGAATCAGAAGATCACTGCCGTTCATCTTCCATCAATGACTAACTGACGGCCACGATTCCGCGTTTGACTGAGGTACGCACTTTGAAGGTGGAATGATTGGGTTTGACCATAGGAATTTGAGAAAATTTTTCCATTAACATAAATAAACTGAAGAGACTACCTGGGAAGTTC


Gene Sequence:
>Vu_36400(+)
CTGTATTTGAGTAAGAGAGAGAGAGAATCTAGAGAGAGATAGAGACTGAGAGAGGGTTATTTTTAACAGGGTTGTGTTGTGTTGGTTTTTCATTTGTTTGTTGGTTTGGTGCTGGGAAGCGGGGTGTGGGGGAAAGAAAGTTGGGGTTCTCTTTCTTCTAACTTGAAAAAGTTTTGATTTTTTCTTGTGGGGTTTGAGGGATTTAGGGTTTGGATTGGTGGGTTGTGTGTGGAGTCAGCAACCATGAATATGATGCGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCCATTTCTTCAGATCCTGTAAGATATGCTTTTTCTTGGGTCAAAAAGTTTTTGTTTTAATTATTATGTTGGTAGGGGAACTGTTTTTGTTTGGTTGCTCGGAAAATGGAAGCCGTTAGGTTTTGAGAGAGAGGATCATGTTAATTGTTTTAGGTTTCTGGGATTTTTTGGAACTATTGAGGATGCTGCTTTGGAAGGTTTCCTCTATTTCTTAAAATATATTGTTTTTTCCTTTTCTTTTAGATTTGTTTGTTGTGATATATCTTTTATTTACCATTCTTTTTGTTATTATCTTAGATGTATGTGAATGTTTGCCCCTTTTTTCTGAGTACTGGTGATTGTTGATATTTTCTTTCCTATTTTGGAAGATTTAGGTGTTGGGATTAACGAGTTTTATGATCTTACTATATATAGTCTGCATCTGATGCATATCCTCATGCTGTTTTTCTATGTAAACATGATCTTGACACAGGTCAGTTACGTGTGCCTATTAAAAGGGAAGTTTTGCCTTCATTGCAAAATACATTACGTAATTAAATGATAAATTGAACTTAAAGATAGGTTACATTACCTGTTGGTGTTTCACCTCGAAGAAGAATTTATTTGGGATGCGTACTAGTTGTTTGATTACTTAATCTGTTTTTGTTATTAAGCTCTTTAATTAATTATTGTGAAACCTAAAGATAATAAACCTGAATAAGTGGTTGAGTAAAGAAATTTATTTGACTGTGTCATATCAAATGTGGAATGTGAATCTTTTTTCCTCCCTCCACTAACACTCTTGGAATAACTCATGTCTTGAATATTTTAAGTGAAGTGCAAGCTGTTTCTTTTCAGGGAGGGGATTCTAACTCGAAAAGAGCCAAGTTTGAACAAGAAACTGAAGTGAAGCCTGTTGAGAAATCAAATATTGTTGAGACAATCATCACAGACCAGGATCAGCCTGTTGATGCACCAAAAGAAACTACAGTTGGCTTATCCGATGTATCTACAGTAGCTAGAACTGAGAAGTCAGGCTATGATGAACTTCCCAAAGAATTAAATGAAATGAAAATTAGAGATGAGAAAAGCAAGAACAACAATGACAAGGTATTTAATGCCATTCATCTTTCCTTAATCTTCCAAGTTGTGCTTATTTTGGTCACCTCCGTGTTAATCTATATATGTGATATCATATCTAGATATTTCTTGTTCATTACAAGTGAATACACAGCAACTTCATCTCATAACTACTTTTGTGTTTAGCAATTTCATTACAAGTGAATACACAGCAAATTACTTTTGTGTTTAACAATTTCATTTGTCTTTTTAAATGCCATCAGTTGTTGATTTTACTGAAATTGTTGCGTGCAGGATATAGAAGCAACTGTTGTGAGTGGTAATGGAACAGAAACAGGTCAAATAATAACAACTGCCATTGGTGGTCGGGATGGACAACCAAAGCAGGTGATTACTTTATGTTTGTTGCATCTGTACGCTTTATTTGCACTGGTAAATGATAATTTATAAACCTTAACAATGGTTTGTTACTTTATTCACTTATATAATTATATTTTATTGGTTTCAGACAATCTCATACATGGCTGAACGTGTTGTTGGCACTGGTTCTTTTGGTGTCGTTTTTCAGGTATTTATATTATTTTGCAGTCATTTTATTATGTAGTTTTCCTCTACTTCATTGTGCGCTTCGGGCTTGTCATATACTTGTTGGCTTACAGTATTCTTTATTTGTTGTAGGCTAAATGCCTTGAGACTGGTGAAGCAGTTGCCATAAAGAAAGTGCTGCAAGACAAGAGATATAAGAATAGGGAACTCCAGGTTATGCGCACAGTTGACCATCCAAACGTTGTTAAACTAAAGCACTGCTTCTTTTCAACCACCGAGAAAGATGAATTATACCTTAACTTAGTTCAGGAGTATGTACCTGAAACTGTCTACAAAGTTTCAAAACACTATGTTAGGATGCACCAACATATGCCCATGATTTATGTGCAACTGTATACATACCAGGTAAGTTTTGTAATGGAGTTGATAACAGTTTGATCTGTTCTGACTTTTCTGCAGGATTTCTAATTGTGTTAATTGCTTGAGATTTTTGTTTTTGTGTCTATATTGATTTGCCCCGATACTCCCATCTTGTAGATATGCCGTGCATTGAATTATTTACATCAAGTTATCGGTGTCTGTCACCGTGACATCAAACCCCAGAATCTATTGGTAAGTTCATTTCAACAGTTGGTTCTGAGTGATACTTCTTCTGTCCGCTTTTATGTTTTAAAAGTTTCCTTTATTTCTGCAATATTTTTTTTACATGCAAAGGTTTATCCTTTGGACTTTCCAGATTATTCTGATGTATGGATTGCTCAACTTCATTAAATTTTTTGGGGGGAGCGGGTGGTAAACAATTTTTGAGATGTAGATAATGTATTTTTTAGAAGGAGAACAAGAGCCTGCAAACGAAACAGTGTTGCATGCTTGTTTAACATGTGATGTGATTCATACTTCTTAAAACTTGTCTTGACATGTGATTCATATGATAGGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTAAGTTTCTTTACCTTCTGACTGAGCTTTTGATGCTATACTCCGGGTTTATGACACTATTTCTTTTTCAGGTGCCTGGTGAACCCAACATATCATACATTTGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACTACCGCCATTGATATGTGGTCTGTTGGTTGTGTTTTAGCCGAGCTACTTCTAGGACAGGTGAGCATATGCAAGACTCTGTTATTTTTCTTCTCTCTCACACTTGATGGACTTCCAGTGGATTCGGTCCATTACAGTATACAATGAGATCATTTGATTCTTGTAACGATGTTGGAAAAGGCCTTTTTGTTATTTCTCTCGCATGTTGAGGAGCTTTTATAACAGTTGTCAAAATTTTAAATTTCCATTAGTTTGTTTATTGTGAGAAAGTTTCCAATTAAACTGATCTATGTTGTATTATTTGCAGCCATTGTTTCCTGGTGAAAGTGGGGTTGATCAGTTAGTAGAGATAATCAAGGTACATTTTCTTTTGCTCTTTAATATCTGGTCCCCTTGTTTTGCCTTATGAGCTTACTTTTCGAAGTTACAGTCTGTCTATTTCTTCAATCTCAGCTTTTTTATTTTATACTGAATAGATCTTGGGAACTCCAACCAGAGAAGAAATAAGGTGCATGAATCCCAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCATCCATGGCACAAGGTTAACAATTTTTTCTCCGCTGCTGCCTGCTAAAGTACAATGTAATCCATAAATGATGAGTACTTCCATTCAAACCTGACTGAAAAGTGCTTGCAGGTTTTTCACAAGAGAATGCCACCTGAAGCTGTGGATCTGGTGTCAAGGCTGCTTCAGTATTCTCCAAATCTACGTTGCACTGCTGTAAGTTGATTTGTTTTAAAAAATGTTACCCACTGTATCTAGATTGCATAATGTGTATTCAATCACACTACATTTTTATGCTACACTAAAAGAAAGATGGGCCATTCTTACATGTGATAGTAATTGTTTATGATTTAGATTGTCCATTACCTACCCAAGTATATAGTAGCTGTGAGAAAATATTTAGCACTGCTGTTAATCTGTGTCCTAATGGTTTCTTTTTACAGTTGGCTGCTTGTGCACATCCATTTTTTGATGATCTGCGGGATCCAAATGCATGCTTGCCAAATGGGCGACCCCTACCTCCTTTGTTCAACTTCACATCTCATGGTAATATAGTTCTGAACTCTTTAACTTACGTGGTACTTTTAATGTGTATGGCTGCTAATGTAAGGAAAAAAATGCAGAACTGGCAAATGCACCTGAAGAGTTGCGGCGCCGCCTCATTCCTGAACATGCAAGGAGCTGAATCAACCTGAAAGATTAAACATATCCAGGGCATTGTAAATGTGTTTTGAATGAATAGAGATACCCTCACCGGCATCACAACCAGGTCTGTTCTTCAGCCTCTTCTGCACAAGTCACAACTGTGACTACACAAGTGAGAAACCTGAACAAACCCTTGAAAGTTTTATCAAGGAACATGTATAAAAGACCTGCAGGTGACTCAAAATGGATAAAATGTCACTGCCTGGTTTACAGGGTAGCAACCCTTTTAAGTAGTTTATAATTTGGTGCCTCTATTGTGAAAGATAATGATTTCTAACTGTTCTGTAATCATATTTCCATATAGTTCAAGTTCGTTTATTACTTTATTCCTTGAAGTGGACTAAGTGGAATCCTCAATTGAAAAGGCTCAGCTTTTCCACTACCCTTTATTCTATATTTTTCTTCATTTACTAGTTTAAGAAAAAAAAAGACATTTCCTTTTCC