Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_36229 LG11 19576523 19577811 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   snoRNA splicing, snoRNA splicing
Cellular Component   is active in   U2-type spliceosomal complex
Cellular Component   located in   nucleus
Molecular Function   enables   molecular_function
Pathway   B 09182 Protein families: genetic information processing   C 03041 Spliceosome [BR:ko03041]
SNP Position Effect Amino acid change
T/A 19576524 stop_lost&splice_region_variant p.Ter329Leuext*?
G/T 19576665 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_36229.1
MEDSDQPAKSTENQQTEQVCSFFRKPINKKNIRKRTIDDEDNEEDSNKETSVLHVQKKTLKPDNKLFFSTGSSKSSVSAEPSEESGKPVFQFESSKEIQVQHDSKATATLETETEFSKDARAIRERALKQASESLKGKSARPEDEKLYKGMNSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGEDADEEEGANLNDEDDEDSLPFACFICRNPFADPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDK*


CDS Sequence:
>Vu_36229.1
ATGGAAGATTCTGACCAACCTGCCAAGTCAACTGAAAACCAGCAAACTGAACAAGTTTGTAGTTTTTTCAGAAAACCGATAAATAAAAAGAATATAAGAAAGCGGACTATCGATGATGAAGACAATGAGGAGGACTCAAACAAAGAAACTTCTGTGTTGCATGTTCAAAAGAAAACCTTAAAGCCTGACAATAAGTTGTTCTTTTCCACTGGCTCGTCAAAAAGTTCTGTATCTGCTGAACCAAGTGAAGAGTCAGGAAAACCAGTCTTTCAATTTGAGTCTTCAAAAGAGATTCAAGTTCAACACGATAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGAGTTTTCGAAAGATGCTCGTGCCATACGTGAAAGAGCTCTGAAGCAAGCATCAGAGAGTCTAAAAGGGAAAAGTGCAAGGCCCGAGGATGAAAAATTATATAAGGGGATGAACAGTTACAAGGACTACAAGGCTGGCTTTCGTAGAGAACAAACAATTGCTAGTGAAAAAGCTGGTGGAGCACATGGTCCTCTGAGGGCTTCAGCGCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGACTATAAAGAAACTGGTTACTGTGGATATGGCGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGTTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAAGACGCAGACGAGGAGGAGGGTGCTAACTTGAATGATGAAGATGACGAGGATTCGTTACCTTTTGCATGTTTCATCTGTAGAAACCCCTTTGCGGATCCTGTTGTAACCAAATGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCACCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATCTTTAATGTTGCTCACGAGATACGCAGGAAGATGGCCGAGGATAAATAA


Promoter Sequence:
>Vu_36229::LG11:19577811-19579811(-)
AGAGGGTCGCACCTCCCACAAAAGTTATGCATAAAAGAGTGCAGTATAGACTAGGAAGTGACTCCTAGGTCGTCTCTCAAGGACCAAATGTGGGTTCAGTCTCAGATCAAACACGAAGTGGGGGGGGGGGGTTTGAAATAGTTTTTGTGATTAGAAACGAACTAAATTAAAACTGGGACTCAAACACGACCGAACATAATTGAAAGCATTGAAAAAAACGAACAAAACATGAAGACCGAACGGTCCTATAGATGCCCGAACGGTTCTACATTTAGACCGAACGGTTTCTAAAACAGTTGAGGAAATTGGAAATGCAGGAAGATAAAAAAAAAACCGAAAATAATAGACAACATGAAAACATTAAATTGAATGGTCCTAAAGCAAGGTGTGTGAACTAATTAAAATGCAGCTAATAATAAAGGAACACGTGGTGTGATATTCAAATACAAAACTTAAGCTAACAAGAAAATGCTATTCATCACGGAATCAACACTAAAAGAAAAATAATAAAAGAAAAGCGTTCAACCAAAACGAAATTTTAATTCCACACAGGTGAAATGAAATTTCCCAAACTAGAATTTGCATCTTACGCTATTGAAATGCATCAGCTAATAAATGAGATAAACATTGCAGCGGGAATAAAATTTCTATGCTTAATTTAAGAAATGCAATGCATCTTAGAAGCACCGTGAAGCTGCTCCATGTGTCTCCCAATAATTGAAGCACCGTCCCCTAGCTCAAGCAAAGAAAACGAAAATAAATCCTCTCAAGGTGGCTGCTGCACCTCCAAGATTAATAACCGTGTGCTTCCAAAGATCCTCTCCACCGCTTCTCCCTCCTAATGAAACATGAATATATCCTCTTTTTCCTCCATCCAGGCCGTGACACCTTGTGCCTCTTTCCAGCCGTGACAAACACCTCACACACCTACGTGTTGCTGCTTCAAAAACGTAACACCACCGCCCTTCTTGAATCCCGTGCTTTATCTAAAATGCAAAGTGAATCAGCAACTCAATTTTGTTAAATTAGGGACTTAATTGATCACTTCTAAAATTGGAGGACCCAAGTGAAACAAACCCGCAAATATAGGGACTTCCAAACCTATTAAATCTTTTAAATAATTATTAAAATATCAGTTTTGATATTTCACATCCCCCTATTTTTCTTTTGGAACCCCTGCCTGCACCACCTAAAATCCCCTCAACTCAAAAAAGTGTCATGTGTCCTACCTTCTCTCTCTCCTAACCTACTCTCTCACACCACTCACCGCAAGCTCGCTGCCATTGGAGCTCTCATCTCCTCGCTGCCCTGCGACGTCGGAACCTTAGGCCGCCGCTGCCATTTCCGATGAGACGTAATCACATGATATCCGTCCTGTTCTCTCTCATGTTTTTCTGTGTGTGCGTATCATCCTCTCTCCCTCTTTCTCTGTATCGTTTCTTTCTCGATTTGGATTCGTTCTGAGGGTGATTGGTTGTCTTCTAATGGTTGTTGAAACCAAATGGAGATGGTGAAGCTGATAATTCCTCAGGACTATTCGCATCATTCCCGAACTTTGGAAATTTGTGTTTAATTGTTTGAGATGATTCTGTAATTTGTTAGATTTTTTGATGATTTATTCGATTGTGAAATTCGTTTGTTTTATTTGGTGATTTGAGTTGCTACCGAGTGATGTTGAAGAGGTTGAGTTGGGGTGGGGTTTATCTACACCGGTTATTTAAAATATGATTGTTATGTCCTGCAACCTAATTGGTGAGTTTATTCTGTGTTTGAGTGTTTAAAGATGCCTATTTTGTCTAATGTGGAAAAGGCAATTTGTCTAAGTTTACAGCTAAGTTTGATGCTTATGGTTTTTGGGTCATCATTAAGGAAATTATTTTATTTATTTTCATACATTGGTTTATACAATTTGTAAATATAGATTCATAAATATGATATAGTCTTATTACTAATTAGGATTTGGATGTTTATCTGTGTCAGGTGCATAAATCATTCTGATT


Gene Sequence:
>Vu_36229(-)
ATGGAAGATTCTGACCAACCTGCCAAGTCAACTGAAAACCAGCAAACTGAACAAGGTATGTCCGATTATTTTATCTATAATTTGTTAAAATCTGCCTCTGCATTGGACCCAAATGTCCAATCTTGTTTGCTTTTTGTTCTCTTGATCAGAGTTTGTTAGTTGTTACTAGTACTCTATCGTATTATTTGATGTTTTGTTTTCTTTCAGTTTGTAGTTTTTTCAGAAAACCGATAAATAAAAAGAATATAAGAAAGCGGACTATCGATGATGAAGACAATGAGGAGGACTCAAACAAAGAAACTTCTGTGTTGCATGTTCAAAAGAAAACCTTAAAGCCTGACAATAAGTTGTTCTTTTCCACTGGCTCGTCAAAAAGTTCTGTATCTGCTGAACCAAGTGAAGAGTCAGGAAAACCAGTCTTTCAATTTGAGTCTTCAAAAGAGATTCAAGTTCAACACGATAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGAGTTTTCGAAAGATGCTCGTGCCATACGTGAAAGAGCTCTGAAGCAAGCATCAGAGAGTCTAAAAGGGAAAAGTGCAAGGCCCGAGGATGAAAAATTATATAAGGGGATGAACAGTTACAAGGACTACAAGGCTGGCTTTCGTAGAGAACAAACAATTGCTAGTGAAAAAGCTGGTGGAGCACATGGTCCTCTGAGGGCTTCAGCGCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGACTATAAAGAAACTGGTTACTGTGGATATGGCGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGTTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAAGACGCAGACGAGGAGGAGGGTGCTAACTTGAATGATGAAGATGACGAGGATTCGTTACCTTTTGCATGTTTCATCTGTAGAAACCCCTTTGCGGATCCTGTTGTAACCAAATGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGGTATAATATAATAGATTTATGCATGTGTATCTGATTAAATATTTATAATTAAGATTTTATGTTTCTCATTTTAGCGTGATACATAAAAACACACTAAATATCTTGCCATTTAGTTATGTCTAACTTTCTGTTTGTTTTTATTTACAGCACCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATCTTTAATGTTGCTCACGAGATACGCAGGAAGATGGCCGAGGATAAATAA