Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_36041	LG11	10730478	10734224	PREDICTED: putative disease resistance protein At3g14460	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/C	10730498	synonymous_variant	p.Gly7Gly
G/A	10731171	missense_variant	p.Ala232Thr
A/C	10731463	missense_variant	p.Glu329Ala
G/A	10731505	missense_variant	p.Gly343Glu
C/T	10731508	missense_variant	p.Thr344Ile
A/G	10731636	missense_variant	p.Ile387Val
G/A	10731724	missense_variant	p.Cys416Tyr
T/C	10731823	missense_variant	p.Leu449Ser
G/A	10731899	synonymous_variant	p.Leu474Leu
G/T	10732049	synonymous_variant	p.Ser524Ser
G/A	10732103	synonymous_variant	p.Lys542Lys
T/A	10732105	missense_variant	p.Phe543Tyr
A/G	10732166	synonymous_variant	p.Pro563Pro
A/G	10732170	missense_variant	p.Ile565Val
G/A	10732213	missense_variant	p.Arg579His
C/T	10732425	missense_variant	p.Leu650Phe
T/A	10732544	synonymous_variant	p.Leu689Leu
G/T	10732767	stop_gained	p.Gly764*
T/C	10732804	missense_variant	p.Ile776Thr
T/C	10733142	missense_variant	p.Cys889Arg
A/C	10733214	missense_variant	p.Ile913Leu
C/T	10733300	synonymous_variant	p.Thr941Thr
G/A	10733302	missense_variant	p.Ser942Asn
C/A	10733354	synonymous_variant	p.Ala959Ala
G/A	10733823	missense_variant	p.Val1116Ile
A/G	10733863	missense_variant	p.Glu1129Gly
T/A	10733878	missense_variant	p.Val1134Asp
C/A	10734045	missense_variant	p.His1190Asn
A/T	10734054	missense_variant	p.Asn1193Tyr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_36041.1

MAAALVGGALLSSFLNVLFERLATREFVNFIRGKKADKWLQKMKNQLLVVKVVLDDAEKKQITDSNIKEWLDLLSDVVYEVDDILDEVSTKAATQKKVSYSFCDLFKKKKIVSKLEDIVGRLDDILKQKESLGLKLNEAENDQPPEPQPTSLEGRYGMYGRDEDKEAIMKLVSEDSSDSEAVSVISIVGMPGVGKTTLARSVYNDDKLTQIFDLKAWVRVSDRFDIVKVTKAMLEEITQKPCTLSDLNSIQHDLLDKLKGKRFLIVLDDVWIEDCDVWSSLTKPFLSGIRGSKVLVTTRNESVAAGVPFHSAKYDLKILLDEDCWLVFESIAFPLSEVSENRGTLENIGKKIVQKCDGLPLAAQSLGGMLRRKHDIRDWNNVLESDIWALPGSIIPALRISYNHLPPHLKRCFVYCSLYPKDFEFRKDELILLWMAEDLIKTPRKGKTLEEVGHDYFDDLVSRSFFQCSTYQALGKYFGNRYGNCFVMHDLMHDLATFLGGEFYFRANELGKETKIDIKTRHLSFRRFSDPVSDIEVFDTVKFLRTFLPINYEDSPFNNEKAPCIIVSMLKYLRVLSFRAFQSQLYLPDSIGELIHLRYLNLSSTSIAALPESLCNLYNLQTLKLYGCSNLTKLPRAMQNLVNLRHLIILNTPIEEMPHRMGKLNQLHNLDCYTVGKHKENSIKELGGLPNLHGWFCVQKLENVTTGEEALEARIMDKKHIYHLSLEWSERNDNSIDFQIELDVLGKLQPHQNLESLSINGYQGTRFPEWMRNFSIPNITNLYLTNCSNCSKLPSLGQLPSLKLLRISEMNSVKTIDASFYKEDCSSLTPFPALQSLHIVRMPYWEVWSSFVSEAFPVLNDLLISECPNLRGDFPDHLPALQTLVVTNCDLLVSSVQRAPTLRTLEIYKTNKIVFHEFPLLVETIEIEGRPMVESMMEVITSIQLPCLHYLSLQDCSLALSFPGDCLPASLKTLDISGLSNLKFPMLHKHKLLESLSINNSCDSLKSLPLVNFPNLISLQIRNCENLESLLILRSESLKSLNSFELGDCPNFASFPEEGFSAPNLTRFSVYGCVKLNSLPYQMETHLPKMEYLSISNCQQIEGFPEEGMPPNLTTVKIRNCEKLLSSLEWISMVMVTSLKVCGPCDGMNSFPKEGLLLPSLTSLHLCDFSSLETLDCKGILHLTLLQELHIENCQKLENIVGERLPVSLIKLRIEGCPLLQKLCHRKHRKIWPKICHVRGINIDGRWI*

CDS Sequence:
>Vu_36041.1

ATGGCAGCAGCCCTAGTAGGTGGTGCACTCCTTTCTTCCTTCCTTAACGTTCTTTTTGAGAGGCTGGCTACCCGTGAATTTGTAAACTTCATCCGTGGAAAGAAAGCTGACAAGTGGCTTCAAAAGATGAAGAACCAGCTGCTAGTCGTTAAAGTTGTGCTTGATGATGCTGAGAAGAAACAAATCACAGACTCCAATATCAAAGAGTGGCTCGATCTTCTCAGTGATGTTGTCTACGAGGTGGACGACATACTTGATGAAGTTTCTACTAAAGCTGCTACTCAAAAGAAGGTAAGTTATTCCTTTTGTGACCTTTTTAAAAAGAAAAAAATTGTTAGTAAGTTGGAAGACATTGTTGGAAGATTAGATGACATTTTAAAACAAAAGGAGAGTCTCGGTTTGAAGCTGAATGAAGCGGAGAACGATCAGCCACCGGAACCTCAGCCAACATCACTGGAAGGTAGATATGGTATGTACGGTAGGGATGAAGACAAGGAGGCCATAATGAAGTTGGTGTCAGAGGATAGCAGTGATAGTGAAGCAGTGTCTGTGATCTCTATTGTAGGCATGCCTGGGGTTGGAAAAACAACTTTGGCACGATCTGTGTATAACGATGACAAATTGACTCAGATATTTGATTTAAAGGCATGGGTTCGTGTTTCTGATAGATTTGACATTGTGAAGGTCACAAAAGCTATGCTAGAGGAAATTACTCAAAAGCCTTGTACATTGAGTGATCTGAACTCAATTCAACATGACTTGTTGGACAAACTGAAGGGTAAGAGATTCTTGATTGTCTTAGATGATGTTTGGATCGAGGATTGTGATGTCTGGAGTAGTCTTACAAAACCATTTCTAAGTGGGATTAGGGGAAGCAAAGTTCTTGTCACAACTCGCAATGAAAGTGTAGCGGCTGGAGTCCCTTTTCATAGTGCTAAATATGATCTAAAGATATTGTTAGATGAAGATTGTTGGTTGGTGTTTGAAAGCATTGCATTTCCTCTGTCAGAAGTCAGTGAGAATAGAGGAACTCTAGAAAATATTGGAAAAAAGATTGTTCAAAAGTGCGATGGGTTGCCGTTAGCTGCACAATCACTTGGAGGAATGTTGAGAAGAAAGCACGATATTAGGGATTGGAATAATGTACTTGAAAGTGACATTTGGGCACTTCCTGGAAGTATCATTCCAGCTCTCAGAATCAGTTATAATCATCTCCCTCCACATTTAAAACGGTGTTTTGTGTATTGCTCCCTTTACCCCAAAGATTTTGAATTTAGAAAAGATGAACTGATCCTGCTGTGGATGGCTGAAGATCTTATAAAAACACCAAGAAAAGGAAAGACTTTAGAAGAAGTTGGCCACGACTATTTTGACGATTTGGTTTCAAGATCGTTTTTCCAATGTTCAACTTATCAGGCTTTGGGTAAATATTTTGGTAATCGTTATGGTAATTGTTTTGTGATGCATGACCTCATGCATGATCTAGCAACTTTCCTTGGCGGGGAATTCTATTTCAGAGCAAATGAACTTGGAAAAGAAACCAAAATAGATATAAAGACTCGTCATTTGTCGTTTAGAAGATTCAGTGATCCTGTCTCGGATATTGAGGTTTTTGATACAGTCAAGTTTCTAAGAACTTTCTTGCCGATCAATTATGAAGATTCTCCATTCAACAACGAGAAGGCACCATGTATTATAGTGTCCATGCTTAAGTACTTGAGAGTTTTATCATTTCGTGCATTCCAAAGTCAGCTTTATCTGCCTGATTCAATAGGTGAATTGATCCATTTGCGTTATTTAAATCTCTCTAGTACAAGCATAGCAGCACTTCCGGAGTCATTGTGTAATTTGTACAATCTACAGACTTTAAAGTTGTATGGTTGCTCAAATCTGACTAAGTTGCCAAGAGCCATGCAAAATCTGGTAAACTTGCGTCATCTTATAATTCTTAATACTCCCATAGAAGAGATGCCTCATAGAATGGGGAAACTAAATCAATTACACAACTTGGATTGCTATACTGTGGGCAAGCATAAAGAGAATAGCATCAAAGAACTGGGAGGACTTCCAAATCTCCATGGTTGGTTTTGTGTTCAGAAATTAGAGAATGTCACTACAGGTGAAGAAGCACTAGAGGCAAGGATAATGGATAAGAAGCATATTTACCATTTATCCTTGGAATGGTCTGAGCGTAATGACAATAGCATCGACTTCCAAATTGAATTAGATGTACTCGGCAAGTTACAACCTCACCAAAACCTGGAATCGCTTTCAATAAACGGTTATCAAGGAACACGATTTCCCGAATGGATGAGAAACTTTTCCATCCCAAATATAACCAATCTATATTTAACAAATTGTAGCAATTGTTCCAAGCTTCCTTCACTTGGCCAACTACCATCTCTCAAGCTCCTCCGTATTTCAGAGATGAATTCAGTGAAGACTATTGATGCATCCTTTTATAAGGAAGATTGTTCATCTCTGACGCCCTTTCCCGCCCTTCAATCTCTACACATTGTTCGCATGCCTTATTGGGAGGTGTGGAGTTCCTTTGTTTCAGAAGCTTTTCCTGTGCTTAATGATCTTCTTATAAGTGAGTGCCCCAATCTAAGGGGAGATTTTCCAGATCACCTTCCTGCTCTGCAGACACTCGTCGTTACAAATTGCGACCTTCTTGTCTCTTCTGTACAAAGGGCTCCCACCCTTCGAACATTAGAGATATATAAAACCAACAAAATAGTGTTTCATGAGTTTCCTCTTTTGGTAGAGACCATAGAGATAGAAGGAAGGCCAATGGTGGAGTCCATGATGGAGGTAATCACCAGCATCCAACTTCCTTGCCTCCATTACTTGTCATTACAGGATTGTTCGTTAGCCCTGTCTTTTCCTGGTGATTGTCTTCCAGCATCGTTGAAAACTCTTGATATCAGTGGTTTAAGCAATCTCAAGTTCCCGATGTTACACAAACACAAATTACTGGAATCACTGTCAATAAATAACAGTTGTGATTCGCTCAAGTCTCTTCCACTGGTTAACTTTCCAAATCTTATTAGTCTTCAAATCAGAAACTGTGAAAATTTGGAATCTCTTCTGATCTTAAGGTCAGAGTCGTTGAAGAGTCTTAATTCTTTTGAGCTTGGGGACTGCCCCAACTTTGCGTCATTCCCAGAAGAAGGATTTTCTGCGCCCAATTTGACTCGTTTCAGTGTTTATGGTTGTGTTAAGTTGAATTCATTGCCCTACCAGATGGAAACTCATCTCCCAAAGATGGAATATCTTAGCATATCCAACTGCCAACAAATTGAGGGGTTTCCTGAAGAGGGTATGCCACCTAACTTGACAACAGTTAAGATAAGGAATTGTGAGAAACTACTTAGCAGCCTAGAATGGATATCGATGGTCATGGTTACCTCTCTCAAAGTCTGTGGTCCATGTGATGGCATGAACTCCTTCCCAAAGGAGGGTTTGCTACTTCCCTCCCTCACCTCTCTGCATCTATGTGATTTCTCAAGTCTAGAGACATTGGACTGCAAGGGCATTCTCCATCTCACGTTGCTACAAGAATTGCACATTGAAAATTGTCAAAAGTTAGAGAATATCGTGGGAGAAAGGCTGCCTGTCTCTCTGATAAAATTAAGAATAGAGGGATGTCCCTTGCTGCAAAAACTATGCCACAGAAAGCACCGTAAAATTTGGCCTAAAATCTGCCATGTTCGTGGGATAAACATTGACGGTAGATGGATTTAG

Promoter Sequence:
>Vu_36041::LG11:10728478-10730478(+)

ACATTTGAGCCAACTATATAAGGGATAGACGCCACTTTCTTCCCAAAACCTTAAGGCAATGGGTTAATGGGTCTTTCACCTTTATATACTGCTCTACTTTCTCATTTCTATCCAATGTGGGACTTGGACTCACACTTGGATTCCCAACAATCTCCTTCTCTAGGGTGAGTCCCTTCTACATAGGTACACTCCCCCTCCAGCGGAAGCATTCCCAACCAACCACAACCACGAGTAGCCCTTTCCAACTGTCGTTCATCTTAACGGAACTCGCTTACCTGAATAACCTTTGCCAGGAAGACTTTCGGTATAAGGATCATTATACTCGTCCGAGCCAGTCACCAAGAGAAACCATCGGTTCTGATACCACGGTTAAGAAAATCTCACAATACACACACTCAATTTTAAGAAAATATCTGAGTGTGTGTATTTTGAGATTTTCTTAACACTAACCTCTAAGTCCACAATTGTAAAATCAAAAAAAAAAATATAAATTAAAATTTTTTTGGTCTTGTGTTATGATTTTTTTCGGTAAATTACTTTATTGTTTTATTAATTTATTATTTTATTTATACATGATGTGATTTGTATTATTTATATAAGTATTTTTGTGTATAACTATGAATGGAAAACTTGTCTTTTGGTGATTAAGGCTTGACCCTTTAGCCAAATAGCATGGGTTCGAACCTTCATGGGTCACTTATGTGAGTCTTATTGGAATTTAAGAGTATTGGAGTTACGACCAGTGGCTAGAATCTCCAAGGCTATTGATTGCTCTTGCAGAGAATTAGAAGAAGAAGTTTATATGACACAACCAGAAGGTTGTAATTCATCAAATGGATGTTCCAACAAGTCTGTCTGTGAGTGCATCGAGAGAAAACAAAAGCTTAAGACATGAGTATATGTGGGTTGGTTTGAGTTTGGCATTGTTTTGCATGTGTGATACTTCTGCTGCTGCGTTTCACGTAGTCAGTGCAGGGGAGTGTTTGTATTGAGTAAACTGAATCTTCGGAAGCAAAGTTCAGGTAGTGTAGTTGATCAAGAGAAACATGAGATTACATAAAGAATCTTACGAGATTACATATCTAACTAACACATTTAATTGTCCAAAGCTTCAGATTCTGTAAGAGCTTCCCCTGTCTCTTGTAATTCTATGTGCTTCTAATAGCATCTATCGGTCTCAGAAAATGACTCATTTGAAAATTGTGTCCATTACGATGGTATGTTAGACACATGACAATCTGCCCTGAAAATTCTAAGCAACAATCACAACAAAAGGGTCTACAAACACCAATTTGTAAACAGTCATGGCATGGTGTTGTACACGCATTGGGGATCACAAACACACCATGAAAATTAAGAACGTTGAGATTCATGAATTTTGTCGAGGGTCCATAATATTATGTCTAATATTACGTCTACAAGGGCCATGCATCTAATATTATGTCTAAAAGTGAATGTGCACTGTGAGCGCATAATGAACCTTATGGATGCAACTTTTCCATCTCCATAATTCTGTCTTTTCCATATCATATTTAATTTGCTATATCTTTCACATCATTAGTCAGTCACGGCCACGCTAACAATACTTGGAGTTGGCTCAATTACAAACAATTTCACTATGTTTCATATTTTTTTTCAGACACTAAAAAAGTAGATATGCTGAATGTCTTTAATTAACTTAAATATTGGGACACGAACCTTCTCTTTTGAGAAGCATCAATACATAAACCTTCTCTTTGGAAAAGCATCGATACTTGAAACTTCTCTTTTGAACAACGGCACCCACCATTACTAAACTTTCAAGATAGGCATCTTCAATCTCTACCATCGAATATTTATCTAATATGTTATATGTCTAAAGGTTAATTTTGAGACAAGTATTTTACAGAGCTCTCTCAAAATCCTTTCCTTTCTGATCCATTTGTCAAGAACCAACTCAGTTCACTGCAACCAATTCCTTTCCTTTCTCATAAAGAATCACTTGTTTGTTGTTTTGATCA

Gene Sequence:

>Vu_36041(+)