Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_35993 LG11 9784486 9789937 serine/threonine-protein kinase HT1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 9784512 intron_variant
T/G 9784544 intron_variant
G/A 9784551 intron_variant
C/T 9784560 intron_variant
A/G 9784597 missense_variant&splice_region_variant p.Thr5Ala
C/T 9784598 missense_variant&splice_region_variant p.Thr5Ile
G/T 9784600 stop_gained p.Glu6*
C/T 9784605 synonymous_variant p.Asn7Asn
G/A 9784606 missense_variant p.Gly8Arg
C/T 9784662 synonymous_variant p.His26His
G/A 9784681 missense_variant p.Ala33Thr
C/A 9784682 missense_variant p.Ala33Glu
G/A 9784683 synonymous_variant p.Ala33Ala
G/C,* 9784697 missense_variant p.Cys38Ser
C/T,* 9784701 synonymous_variant p.Leu39Leu
G/T,* 9784792 intron_variant
A/C,* 9784799 intron_variant
T/C,* 9784810 intron_variant
C/A,* 9784822 intron_variant
G/C,* 9784831 intron_variant
G/A,* 9784833 intron_variant
G/A,* 9784869 intron_variant
G/A 9784891 missense_variant p.Val50Ile
C/T,A 9784895 missense_variant p.Ser51Tyr
G/T 9784915 missense_variant p.Gly58Cys
T/C 9784958 missense_variant p.Val72Ala
T/C 9784961 missense_variant p.Ile73Thr
A/G 9784977 synonymous_variant p.Leu78Leu
C/T 9784979 missense_variant p.Pro79Leu
C/T,* 9785002 synonymous_variant p.Leu87Leu
C/T 9785014 missense_variant p.Arg91Cys
T/A 9785033 missense_variant p.Leu97His
G/A 9785041 missense_variant p.Ala100Thr
C/T 9785054 missense_variant p.Ala104Val
A/T 9785060 missense_variant p.Asp106Val
C/T 9785086 missense_variant p.His115Tyr
G/T 9785089 missense_variant p.Ala116Ser
A/G 9785105 missense_variant p.His121Arg
A/G 9785216 intron_variant
T/A 9785382 intron_variant
T/C 9786025 intron_variant
G/A,* 9786063 intron_variant
T/A 9786089 intron_variant
G/A 9786500 intron_variant
T/G 9786813 intron_variant
T/A 9786815 intron_variant
G/A 9786992 intron_variant
G/A 9787061 intron_variant
C/T 9787235 intron_variant
G/A 9787257 intron_variant
T/A 9787439 intron_variant
A/G 9787493 intron_variant
T/C 9787602 synonymous_variant p.Val194Val
C/T 9787620 synonymous_variant p.Arg200Arg
C/G 9787628 missense_variant p.Thr203Ser
T/A,* 9787728 synonymous_variant p.Leu236Leu
C/T 9787935 intron_variant
T/A 9788235 intron_variant
G/A,T 9788268 intron_variant
G/A 9788375 intron_variant
G/T 9788396 intron_variant
G/A 9788420 intron_variant
C/A 9788518 intron_variant
T/C 9788588 intron_variant
G/A 9788620 intron_variant
T/G 9788850 intron_variant
T/C 9788867 intron_variant
C/G 9788997 intron_variant
A/T 9789301 intron_variant
G/A 9789412 intron_variant
A/T 9789413 intron_variant
A/T 9789446 intron_variant
T/A 9789492 intron_variant
A/G 9789730 synonymous_variant p.Pro295Pro
T/A 9789739 missense_variant p.Phe298Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_35993.1
MLLWYRERIVAIKVLHRGSTLEERVSRENRFAREVNMMSRVHHENLVKMPVSEDNAFLGFFQFIGACKDPLMVIVTEMLPGLSLRRYLITIRPKQLELYVAIKFALDIALAMDWLHANGIIHRDLKPGSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKPCHVRLQVYNPCPITSVAFSASRDCTTSCCIFSIFLLFTASSLRKLSSFAISFLISSFLVASCSPIHRPCQERPNLPEDISPDLAFIIQSCWVEDPNMRPSFSQIIRMLNKFILTLQPPPFSAPPEPDDEPEAVTSNGTITDFSTRNKIKEFFS*


CDS Sequence:
>Vu_35993.1
ATGTTGCTATGGTACAGAGAACGGATTGTTGCTATCAAAGTTCTGCATCGTGGGAGTACTTTAGAAGAAAGAGTTTCACGGGAGAATCGTTTTGCTCGCGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTGAAGATGCCTGTTTCTGAAGATAATGCATTTCTTGGTTTCTTCCAGTTTATTGGAGCTTGTAAGGATCCTCTGATGGTTATTGTTACAGAGATGTTACCTGGTTTGTCACTGCGAAGATATCTGATCACTATACGCCCTAAACAATTAGAGCTTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCTGGCCATGGATTGGTTACATGCCAATGGAATCATACATAGAGATCTGAAGCCTGGTAGTACAGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCCGCATTTAAGCCTTGCCACGTCCGTCTCCAGGTCTATAACCCTTGTCCGATAACCTCGGTTGCCTTCTCCGCCTCACGCGATTGCACCACCTCTTGTTGCATCTTCTCAATCTTCTTGCTATTCACTGCATCGTCACTTCGCAAACTGTCAAGCTTTGCCATCAGCTTCTTGATCTCCTCCTTCCTTGTGGCATCTTGTTCACCAATTCATCGCCCTTGCCAAGAGAGGCCTAACCTTCCTGAAGACATATCTCCTGATCTTGCCTTCATCATTCAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCATGCTTAATAAGTTCATCCTCACTCTCCAACCACCACCATTTTCAGCACCACCTGAACCGGACGACGAACCTGAGGCCGTGACAAGTAATGGCACAATAACTGACTTTTCTACGCGAAATAAAATAAAAGAGTTCTTCTCATAG


Promoter Sequence:
>Vu_35993::LG11:9782486-9784486(+)
CATAAGCTAATATTATATCTAAAATTTGAGAACAACCAATTTGAATTATTTTAAGCTATAACTATAGGGAGTTTGAAAAGCACGTGAGACGAATAATAATTATTAAAGAAAATATTAAAAAGTGTAGTCCCAGTTTCTAGAAGAGTGAAATGTAAAAGGTGCACGTGGCAAAATGTTATGGATAAGAAGCGGGGAGCCGCGTAAGCCGAGCCGGCGTAACGGTGATATCTGTCCACACTGATTCCACCAATAACGTCCACATCGGCAACATCGTTCTCCTAAATCCACGTGGTTTTCTTTCATACGACAATGCCTCATTTTTTATCACATTTTTCATTTCAGGTTTGGTTTTTTCGTCTTCCCAAACATCACCTGTCACCGAACACTACATTTTTGGATACACTTTCAACCCTCCCTCGTCCAAACCAACATGTCTTCTTCCCACTTCCAACTTGGGGGTAGAGAGAGAAGACTCACGACCAAAACCACCCCTTTTTAGAGAGAGAAAGTTAACTCGAATATTCCTACTTACTCTTCACTTGCAGCTAACTTGGGGTGTTTTGAGACAGTTTTAGAACATAAACTTGGAGGGATTTTGTTGGGTGTGGTTAATTTTGGCTGAAAAATTTGTTTTTCGTCTGTTGTAAGTTACTTTCTCTTTTTTTTTTTTCTTTTTTTCATTCAATATACTTTTTTGTGTGATTTTTTTTATTTTTATTTGATGGGTTTCTTTGAATGAACTGCAAACGGTGGCGAGCTTCTCATTGAAGCAAAGGTTTGAAAGAGGGCGAACGTGCTACATGGGTGAACACAACCTATGAGAAAGATTCGGTTTTTACTATTTTTTTGAGGTGGGGTGGCAGTAGATGATTGATTTTGGATGGAGGGGATTGTGAGCTGTTAGAGGAATTTTGTTTATTTATATTTTCCATTTACTTTGGAGGTGTGTTTATGTTGGAACGATTATTCAGGGGAGGTGGGTTTGTTGTTGGATTTAGAGAGTCTTTATTTCTTATTCTTGGTATGTATTGAAATGAGGGCTTGGTTATAGTTTAAGGTTGCAGCATGAGTTGCAGAGAAAGGAACAAAGGGGAAAGAGAAGAGAAGGAATATGAAAATAGTTCTGTTGCATTGAAATCAAAATCAGCGAGGCAAAACATTGGTTCAATAGAAGATGAACCGCTAACAATTGATGAAAGTCTTCTGATTGACCCCAAGCTATTGTTTATTGGGTCAGAAATTGGCGAGGGAGCTCATGGAAGAGTTTATGAAGGAAGGTCAGTGTGGCAAAGCCTTGAATGTGTTGCCTGCCTAAATTTTTCAATTTTTTGTAGTAACTTTTTTTCCCATTTATTGATTATTTTTAGTTTGTTAATTCGTGTGAAGAATTGGTCAGAAGACCAGTTAAAGGTGATAATTTTTCTTACATGTAAGACCTAGTAGTAGTGTGACTATTGTGTATTAACCTTCAATCAGCTAAGCTAACTCTCAATCATGACTGTATGGTGATATCTACTGGAATTATGTGCAATTGTGTTTTTCTTTTTATCGGCAAATGCTAGTTTTTCGTATTTTGTTAGTGGGGGAGTTGAGCTCACCATCTCTCCCACCCTCTCTTCCAAACCCACCAAATCAACCTTATAACTCCCTATGTGCAATTGTGTATTAACCTGCAATCAGTTAAGCTAACACTCAATCATAACTGTATTGTAATGTCTACTGGAATTGTGTTCGGATGGTGGATATCACTTAAAAGTAAATGTTTACTATGGTTTAAGATAAAAAAGAACTTCAGATATGGTTTTTCACATCTAATGAGAAGCAAGTAGTTACAGCTTCCACATTCTGTAGCATAACTGACGTGATTTCTAGTTTTGTAACGGGTTTCCCAACACGTGTGAAGTTCCATATAAAGATGGAGATTTTAATGGATAGCTTCCAACTCTTAATTTGACTTTTATTCCAATGTTAATAATTGTGGATGCGTTAGAAAAAGACAA


Gene Sequence:
>Vu_35993(+)
ATGTTGCTATGGTATGGTGGATTCAAATGTACAATTATGTGTATACTTCAAGTGGTTTTCTGGCAGCTGGAGTGCTGGTTTATGTAGGTGTAGGTTAATAATTTTCCAGGTACAGAGAACGGATTGTTGCTATCAAAGTTCTGCATCGTGGGAGTACTTTAGAAGAAAGAGTTTCACGGGAGAATCGTTTTGCTCGCGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTGAAGGTGAGTAGTGTGTTTTGTATGTGGGATATATCAGCATATCTTCAAATGTTATAACTGTATCTGCGTTGTATAGTTTGTTTCATTGAAGACTTATCTATGTATAGTGTAAAGTGTATATTATGGTCTTTTGATCTTTATGCTGCTGTAGGACTAATAGATGCCTGTTTCTGAAGATAATGCATTTCTTGGTTTCTTCCAGTTTATTGGAGCTTGTAAGGATCCTCTGATGGTTATTGTTACAGAGATGTTACCTGGTTTGTCACTGCGAAGATATCTGATCACTATACGCCCTAAACAATTAGAGCTTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCTGGCCATGGATTGGTTACATGCCAATGGAATCATACATAGAGATCTGAAGCCTGGTAGGTACCCTTTAATTTAAAACATGTTACTCTTGGTACTGTAGAGTGTTAGTCATATATATCATTGAAGGAACTAAAGAAAATTTCTTTCTTATTTAAAAATTAGAATATCATTTGGGAGCTCTGGTACCTTAGATTTGTTATTTCTTATGGTGCTCTCGGTGTGCACCATACATTTATCTAGTTGCAGAATCTGTTCTGTACTGCTATTTTCAGTAGCCAAATTTCCTTCGTGATTATAATTTTTGTTGAAGCTTCTTTGCTATCTTATTGGAAGCTAAATCTAAGCTACTGTAAAATACCTAAAAGCTACCATTAAAGCTAAAGAGAAGCTATAACATGAGCATTCATATTCTTCATTCATGATTGATAGATATAAAGAATACAGTTATATCGCCTTAAAAATACCAACAAGTATAAGATAACTCTACAAGTGTGATCTAACATGAAGGAATTACAATATAAACTAAATAATATTTTGACTTTAGCCTATAAAATCCTTTAACCACTTAATCTTATTTCTTTTGAGCCTCTTTAAGGTCACCCTATGAGTATCTCTCTGGAAATCATAAAGAGGAAACTGTTCATTTGGTAGAGTACCTTGTATTTCTGGATTGGAACTTTTGCTTTTATGGTAGCTAATCATTGTAGTTTTTGACATTAATGATTAAGTTTGAAATAGATTTATATAATTTCTAGTATTCATAGTCTGACTCACTTGAACTATTGTTTTCAAATTGCTACCATGTAGACAATCTGCTGCTCACGGCAAACCAGAAGTCGGTTAAACTTGCTGATTTTGGCCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCACCCGAGGTGCGTTGTGCCTTATGAACAAGATGTTATCATTCTGCTGCAATTAATGGAAAAAAAATTCACTGAAGTGTTCAGAAAAGCTTGTACTTATTTGGTGTTCATCATCTTATTCTGTCATCACTGTCAGTGTAAACATGATACTTTATTATATACTAATGTGATATAAGACAGATGAGTGGCAGACTGACTTGATATGAACACTCATCAGGTTGTACAGTCCTAAACCAATACGCAGTGCACTACACACTGGCAATGCACAAGGAGTATTTGAGTTTAGATTTGTTGGGGTTTTCAAGCAAGATAAACAAAGCTGTTTATCAGTCATGATCTGATACAGTTCGTGTATTTCTTCATGGATTCTGTGTAATCGTTACATTGAATCATGGTGGATGTTGGCAGTAACCTGTAGGGTGATTATAGTTGTTTCGTTTTTTTAGTTGAGTAAGGTTCCATTCCGCTGACATTATAGTTGTAACACTGACCTTCATGTATTTTTTTTGTGAAGATATTTTTTATGATTGCTTGTGTTTTTCCAGTTGTACAGTACAGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCCGCATTTAAGGTATTAAATTTCGCTTAAGATTGGTCATCCATAACTGGTTATCATGTTATGCAAATTACAAATGCTTGTATGTAGACAACAAATTTACTTTGTGAAAAAACTGATTCACCTTTGTTGTTTTTCATAACAATACAATTGATAGACTAACATATTCCTGACCGTTATACTCAACAAACAAAAATTGTTAAAAACGACCACACATTAACTATCCATAAGACTCCAATGGCTTATATATTTAAGTTTATTTCAAACCCAACAAACTCCTCCTTAAACTTAAATGTTTTTTTTCCTTCATCTTGACTTACACGTGCACTAACTCCTTTTCCAATTGTTGATTGTTCACTCTTTGACCCTATGAAATCCCACAGCAAACATAGATAGTTATAGCCACCACAACAATAACTCCTGTAGACCTTGTTGCCACCGCTAGCCATTGCAACTTTCAACCCTTTTCTTATCTGTTTCTTCTTCCTTACAATGATTGTCCCCAAACTCTTTGCACATCCTTCTTCCCACAAGGCCATCATATTGGTTTCTATTTCTGCACACTTCTTCTACATGTCGCTGTTGTTGCTCACCCAACTTGACTCCTCCAACTCAGTTCTCAATAGTAACCTTCTCCAATTTTCCTCTCCATATTTTATTCTCCTCATTGAGACTCTTCACTCTTTCTTGAAGCACCTAATTGAACTTCCCTGGGAATTGAATCTCTTGGTCTTTTTACTTAAGTTTCTTCGCTACTACCTCTTGTATCGCATTCACCAACATTCTCACTTGTTGCTCCTTGAGCTCCATCCACACTCTCTATGTGTGTTGCACAATGAAACGATTGATCTCTAATATCATATCGTGTTATAGCCTTGCCACGTCCGTCTCCAGGTCTATAACCCTTGTCCGATAACCTCGGTTGCCTTCTCCGCCTCACGCGATTGCACCACCTCTTGTTGCATCTTCTCAATCTTCTTGCTATTCACTGCATCGTCACTTCGCAAACTGTCAAGCTTTGCCATCAGCTTCTTGATCTCCTCCTTCCTTGTGGCATCTTGTTCACCAATTCATCGCCCTTGCGTTGCAACACTACAATCTTGTCCTTGATTCCTGACTATGTTGATCATCTTGAATTATCTGAACTATCCAGTACCCCCACCAAGCTATGTGAGCTTTCCAAATGCCCCATTGAGCTATCCAATTTGCTCAGATGTCTTGCAAAGTTGTTCAATTTCATGTGCTCGGCACCGAAGCTGTGTCATCATCAGTAAAACATCTTCCTCTTTGACATCTGTGAGAAGGTAGGTCATCTCTTCCCTTCTATCCTAAGATCGATAATTTTTACCAAAATGCCTGACCTTACCATAGTTGTAACACCTATTCAAGTTACAATCCTTTGCATAGTTACCATATTTTCCACATAAAGCATTCAACATTTGAGTTGGTCAACCGACCTCCTCTCCACCAATCTCGACCTTGCCCTCATCCGCACCAATTGTGTTGGTGGTTTTTTCTTTCAATTCTTTTTGTCCTCCACAGCCTCCACCACCATGTCCGTTTCCTCTACCACCTTGACATCTTCCTTTGCCTTGAGTGTTTTTAATATAGACCATTTTCCCTTCTTTGATTATTGCTTTTGTTTGGAGTACTTGATCAAGTGGTTGCGCCTTCTTCTTCTTCTTCCGTTGCTCGTGCGCCCTAAGAGACCCAACAAGCTCTTCAACCGAGAGCATTGACAGGTCCTTGGACTCCTCTCCATTTTTGTTGAGCTAGTTCACCACAGTTTCTACTTGAGTAATGTACTCGAAAACTCCTTTTGTCTCTTTCATCTTCATGCTTTCCAACTAGCCCCTTAGTGTTTGAAGTTGGACCTCCTTTACTCGGTCATCCCCCTTATATGCTTTCTTCAATCTATCCCATGCTTCTTTTGAAGATTTGGCACTTGCAATCTTCTCAAAGTCAAACTCATCAATAGCTTGATACAATACGTACAAGGTTGCCTTGTCCTTCGAGCGCGTTGATTTCAATGCATTCATATGGGCATTTGAAAAATTTGTGGTGTGTGTTGGTTCTTTGTGACCATTTTCCACCACCTCCCACTTATCTTGGGACTCCACTCCATTTTTGTTGAGCTAGTTCACCACAGTTTCTACTTGTGTAATGTACTCTAAAACTCCTTCTGTCTTTTTCATCTTCATGCTTTCTAGCTCGCCCCTTAGTGTTTGAAGTTGGACCTTTTTTACTCGTCATCCCCCTTATATGCTTTCTCCAATATGTTCCATGCTTCTTTTGAAGATTTGACACTTAAATCTTCTCAAAGTTAGAGTCATTAGCTTGATACAATACTTACAAGGCTGCCTTGTCCTTTGAGCACCATGCATTCATATGGGCATTTGAAAAATTTGTGGTGTGTGTTGGTTCTTTGTGACCATTTTCCACCACCTCCCAATTGTCTTGGGACCTAAGAAGAGTTTTCATTTAAATAGTCCAATTGTTATAGTTGTTAGATATATTAGCTTATCTTATCTTTATCTTTTTTTTAATTAGTTTCTTATTATTCATTATTTGTATTTTGGGTTTAGACCATATTTCTTCTATTATAAATAGAGTATCATGTGTATATATATTCAACATAAGGGAGATTAATATCATATATAGTTTTCACTATATTGGGTTTAGTTGAAATATTGGAGTAATATTTATGACAAGAATTACCCAAATGTAAATACCGACAAGATATTCATCAAGATGGAAAAAAATGTCCATATTTTTTTGCACAAAATCCTCAAAATTTGTTCTTTAATTGTCCATATTTATATAAATAATACCTTTTTCTTTTGTAACTCACCTTACATGGCATTGAATTTCTTGCTAAGCATAACATGGTTTCCATTTGACATTGCAGCAAGAGAGGCCTAACCTTCCTGAAGACATATCTCCTGATCTTGCCTTCATCATTCAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCATGCTTAATAAGTTCATCCTCACTCTCCAACCACCACCATTTTCAGCACCACCTGAACCGGACGACGAACCTGAGGCCGTGACAAGTAATGGCACAATAACTGACTTTTCTACGCGAAATAAAGTAAAGTTTTCATTTATTCGCCACCTTTTTTCTTCGAAGAGGACCAAAAGCTGATAGTGTGAGTTGTAAATTTGAAGAACCTTCCTTTTGTTGTAGATAAAAGAGTTCTTCTCATAG