Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_35841 LG11 6214207 6217515 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 6214255 missense_variant p.Ser17Ala
G/A 6214311 synonymous_variant p.Val35Val
T/C 6214391 missense_variant p.Met62Thr
G/A 6214392 missense_variant p.Met62Ile
A/T 6214492 intron_variant
T/C 6214562 intron_variant
A/G 6214590 intron_variant
G/T 6214593 intron_variant
T/C 6214667 intron_variant
G/T 6214673 intron_variant
C/T 6214711 intron_variant
A/G 6214755 intron_variant
A/G 6214758 intron_variant
A/C 6214759 intron_variant
T/C 6214762 intron_variant
G/A 6214849 intron_variant
G/A 6214852 intron_variant
G/A 6214895 intron_variant
T/C 6214904 intron_variant
G/A 6214911 intron_variant
A/T 6214978 intron_variant
T/C 6214986 intron_variant
C/A 6214996 intron_variant
A/T 6215002 intron_variant
A/T 6215004 intron_variant
C/G 6215031 intron_variant
C/G 6215069 intron_variant
G/A 6215105 intron_variant
C/G 6215155 intron_variant
A/G 6215170 intron_variant
G/A 6215211 intron_variant
T/C 6215556 intron_variant
G/C 6215583 intron_variant
A/G 6215610 intron_variant
G/A,* 6215639 intron_variant
T/A 6215640 intron_variant
C/T,G 6215656 intron_variant
G/A 6215677 intron_variant
A/G 6215682 intron_variant
T/G 6215762 intron_variant
G/A 6215780 intron_variant
A/T 6215787 intron_variant
C/G 6215817 intron_variant
A/G 6216017 intron_variant
C/G 6216067 intron_variant
A/G 6216068 intron_variant
T/G 6216198 intron_variant
G/T 6216199 intron_variant
G/C 6216222 intron_variant
G/A 6216357 splice_acceptor_variant&intron_variant
A/G 6216409 missense_variant p.Asp137Gly
A/C 6216443 synonymous_variant p.Ala148Ala
G/A 6216498 intron_variant
T/A 6216509 intron_variant
A/G 6216574 intron_variant
C/T 6216607 intron_variant
C/T 6216610 intron_variant
C/A 6216680 intron_variant
A/T 6216816 intron_variant
C/G 6216817 intron_variant
T/C 6216832 intron_variant
A/G 6216859 intron_variant
G/A 6216874 intron_variant
C/T 6216933 intron_variant
T/C 6217023 intron_variant
G/C 6217077 intron_variant
T/G 6217091 intron_variant
T/C 6217159 intron_variant
T/A 6217168 intron_variant
T/C 6217215 intron_variant
A/G 6217245 intron_variant
T/A 6217247 intron_variant
C/T 6217321 missense_variant p.Ser169Leu
G/T 6217326 stop_gained p.Glu171*
A/G 6217327 missense_variant p.Glu171Gly
G/A 6217334 synonymous_variant p.Lys173Lys
C/T 6217344 synonymous_variant p.Leu177Leu
C/T 6217350 stop_gained p.Arg179*
T/C 6217356 missense_variant p.Ser181Pro
G/A 6217361 synonymous_variant p.Leu182Leu
G/A 6217364 stop_gained p.Trp183*
C/T 6217367 synonymous_variant p.Asn184Asn
G/A 6217369 missense_variant p.Arg185Gln
C/T 6217376 synonymous_variant p.Cys187Cys
C/T 6217381 missense_variant p.Ser189Leu
T/C 6217387 missense_variant p.Phe191Ser
C/G 6217409 missense_variant p.Asp198Glu
T/A 6217416 missense_variant p.Ser201Thr
C/A,* 6217433 synonymous_variant p.Ile206Ile
G/A,T 6217434 stop_gained p.Glu207*
C/T 6217442 synonymous_variant p.Phe209Phe
G/T 6217455 missense_variant p.Ala214Ser
C/A 6217462 missense_variant p.Ser216Tyr
C/T 6217465 missense_variant p.Ser217Phe
T/C,* 6217484 synonymous_variant p.Ser223Ser
C/T,* 6217493 synonymous_variant p.Leu226Leu
G/A 6217507 missense_variant p.Ser231Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_35841.1
MANQTFTSLLTNDKQFSSLQLPPKAPTSNKNKSIVNEGGEILFQARNVLKTHENPSLMYLGMEHVHGPPNDDVEDLDRDSGSKLEAQMKRKQANRVYSARYRLRKQARAQNLKNQAEALEAEVSMFQSQLLYWKSLHDGLAEENTVMRAQCDTACKLIAEKEVIRSGYNFQLNQSHQDYDDFHCGTELAFRASPLLSSLTSSPPSSTSSSSLSSLHDLLSFVSYLSTSLSYPVV*


CDS Sequence:
>Vu_35841.1
ATGGCCAACCAAACATTCACAAGCTTGCTCACCAATGACAAGCAATTTTCCTCTCTTCAATTGCCTCCTAAGGCCCCAACTAGCAATAAAAACAAGTCCATTGTGAATGAAGGTGGCGAAATCTTATTTCAAGCAAGAAATGTGTTGAAAACACATGAGAATCCTTCTCTTATGTATCTTGGGATGGAACATGTTCATGGTCCTCCAAACGATGATGTCGAGGATTTGGATCGTGACTCAGGCTCCAAATTGGAAGCTCAAATGAAAAGAAAGCAGGCTAACAGGGTGTATTCTGCGAGATATCGACTCCGCAAGCAAGCCAGAGCACAAAATTTGAAAAACCAAGCTGAGGCACTTGAAGCTGAAGTTTCAATGTTTCAATCTCAACTGTTATACTGGAAAAGTCTCCATGACGGACTAGCTGAAGAGAATACTGTGATGAGAGCACAATGCGACACTGCTTGTAAGCTCATTGCTGAAAAGGAAGTCATTAGGAGTGGTTACAACTTTCAATTGAACCAAAGTCATCAAGACTATGACGACTTTCATTGTGGAACCGAGCTTGCTTTTCGAGCTTCTCCTCTATTGTCGAGCTTGACGAGCTCTCCACCAAGCTCTACATCGAGCTCTTCATTGAGTTCTTTGCATGATCTTCTAAGCTTTGTGAGCTATCTAAGCACCTCCCTTAGTTATCCAGTTGTCTAG


Promoter Sequence:
>Vu_35841::LG11:6212207-6214207(+)
AGGTTTTAAAAGGGACATAAAACTTAATTAAGTCTTATTTTTAATAAATAAGTGAAATTCACATTATTATGTTTTTTAAAGATTAAAATTATTTTTAAGCATAATTATAAAAATACTTTAATTAATTTATTTAGTAGAATTAATTTCTTTCTAAAATGTAAATTGTGTTACGTTTGTTAATTTCTTTTTAAATGTGATGTTCATATATTTTTTTCTTATTTTTATATTTTAATCTAGGATACCCTTTCTTTCTTTTGGTTTAGGTTTTTGTTTTCATATTTTGTTTGGTAGCCTAGAAATGATTCAATTTTCAAGTTCATTGAAATTTAAATATAATAAACAATGAATACATGAATACAGGTTAAATGTTCAAACAGTTGTAATTAATGCTTAAATATCTTATTATTTTCGTAAAATAGATTATATTAAATGGTCGAGCTATGATCATCTTGACATGTAAACAATGTAAAGACTCGTATAGTAAAATTAATTTAAAAACTAACTTTGTAACTTATATAGTATAATTCATTAAATAATAACTTTATAACTATAAAAATATAGTTTCAATTTTCTAGTTGATAAGACAAGGCATGTATTACTTTTTCATTCACCTGGTGAGGAGTTTTCAACCATAAAGGATTGAATTAATAATAGTTGTTTATACTATTTAACATATTTTAATAATTCAAACGTGAGTCTCAAACATTGTTTAGTATATGAAAAAAAATTAATAAATTGAATTAAAAAGACTATATCAATTCAGTTTAAAGTTAAAGACTAAAATGTACAAAATTTTAAATAAAAACAAATTTTAATTTCATATTTAAATTTAGAAACTAAAAATATATTTAACCTTTATTTTAAAAAAAGTTTAGATATTTAATTTCTTTAAAAAATTGTATATTTTGAGACGGGCTGAGTCAAATATTATCTTAAACTCAACAAAATTAGAGATAATTGGAAATTGATAAGAAAAATGTGAAAATATAATTAATTTTATTGAATAAAAAAATAAATATTTGGAAGCTCAATCACTTTTGGATAGATGTTATGGTTTTGGTTTATAAGTTGGATAGATATTATATAGATGTAGTCTCTTTTTTTTTAATTACGTTTGAATCATAAACCAACTGTATTTTTATCGAAAATAAATGTATAAATCATATTTACCGAAATTATGAAGATTATTTAATCATAACATAAGTATCTCTTTGAGATTTTCAGTCAAATATTTATATTTTTATTGAATATTGAATAAAAAAATGTATTTAAAGAATTTCAATCATTAATTAAACAAAATTAAGGTTTTAATAGATGCACTGTATCTTAAGTAAGAACTTATTATACCAAGTTTCCTCTGTTATAAATGAGGTTTTTTTATTTTTCTTCCCATAAATTAAATCTCTAATTTTAGTACAATGAAAGCCAAAATTGTCATTTCCCTACTAAGAGTTACACAAAATTTCTTTTGTTGAAACATAATTATTAACATATTTGTTTAGATTTTTCTATAAATTGATTGAACCCAATGTGGTTACCAAGCAAAGCACGAGTATGATCCTCTACAGTAGTGCATTTGTTCTAGCAAAATATACATTTTTTTGACCAATCATAAAATTATTTTATTTTATATTCTCAATTTTTATAACCATTGAAATATAATCAAACGGTCAATAACTCTACTACAAAGATAGATCAACAGTGGTCAATTTAAGTGTAACTGAGCACCCAAAACCTAATGTTGTATAAAAGGACACCCAAACTTTACAATTCTCTTTCAACTTTCATATTGGATCACACTACCATAGGTATGTAACTCTGCTTCAATAAATGTTTTGAGAATAACTTTCTCAAAAATTTTGCAATTTTAATTTCTCTAACAATTTGTGTTTTAAAGTGTTCTAGTTATTGTTTTGGATTCTTTTATTGAACTATGTTTGACAAGTGTTCCATAAATTGCAATTTGTTTCTCAAATACAAGAGCATTTCCTTCAAGACCA


Gene Sequence:
>Vu_35841(+)
ATGGCCAACCAAACATTCACAAGCTTGCTCACCAATGACAAGCAATTTTCCTCTCTTCAATTGCCTCCTAAGGCCCCAACTAGCAATAAAAACAAGTCCATTGTGAATGAAGGTGGCGAAATCTTATTTCAAGCAAGAAATGTGTTGAAAACACATGAGAATCCTTCTCTTATGTATCTTGGGATGGAACATGTTCATGGTCCTCCAAACGATGATGTCGAGGATTTGGATCGTGACTCAGGCTCCAAATTGGAAGCTCAAATGAAAAGGTAAATAAGTTTTTTTATCTCTAGCAATTACAACTCGTCTACTTCGTTTTTCTATTATCAAGTTTTTTTGAGTTTGAGTATTATTATCCATGTTGAGTACAAACATTGGATTAGAATGAACTCGATTTAAGATTTCGATAGTACACAATTTGATATCTTAGAACTCAATCTTTTAAGATTTTGAGTTTGAATAGTGAGGATATTGGAAAAAAAATTAAAAGAATAAAATAATAAACTTGATTTTTATAGATAAATTATTAAGTTTGAATCTTAAAGAGAAAAAAAATTCAAAGAGGTTATTGATTTATTCCAACCTTTATTGAAATATTATTTGTTCAATAAATACTAATATTAGTATGTTCAATAATTTCACGTCGAAGTGAATAATAATTTAAATACATTTTAATATTATGTGATGTGTTTAAAAATAAAGTTGTGATAAAATTTTAACTTTCGAAAAAAATACTTAGAAAAACAAATCATAATCATATTATTCTAATGTAGGCAAAATCGATAGTAACATTTTATAATAAAATTTAGTTATCAATAAAATTGCAAAGTAATTTTCAGTTGTTTTAAACTCTTATGTATAGCTAGAAAAAATAATTTTAATATAATAAACTATTAAAGGTATGTAATAATTATAAATAAATAAATGTTTAAATTATAGTTCATTGCCCATACTAAAATAGTAAAAAATTAATAAATATATTAGCATTGTGTCAGTGATATTTAGTCAAAACACGTTTTGTATAGAAAGCAGGCTAACAGGGTGTATTCTGCGAGATATCGACTCCGCAAGCAAGCCAGAGCACAAAATTTGAAAAACCAAGCTGAGGCACTTGAAGTGAGTATTCTTCTATATATAATTAATTATTTTTTATTAACATTAAATTTATGAATAGTTTAATCTTCTTTCTACATTATCCTTAATGTTTCAGATTATTCGTTTCTCTAATTCGCATTTAATTAGGTCTGATCTAATTAATTAATGTTAGAAGAAAAAATAATAATTACGTAATTTATGATATCGGTATTTTTCAACCATACTAAGATAGAGAATCAATTATATCATTAATGTGTGACATTTATTATTTTTCACTAAGAGATTAACTAATACAAAAAGATTATATGAAAAAACAAATATTTTTCTAGAAATAATAGTTTTTTATAGGAATTACGAGAGTAAAAGCTTGTCCAGGCCTAACTTGTTGTTTGTTTATAAATTATTCATATGGTTAACTTTGTTTAAATAAATATTTCTATCAATATCCATGAAACCACACTCAAAAATAATGTAGCATGAAGATAAATTGGCTGTCACCATAGTAAGGACTTTACCAACCTTAATACAATCTTGAAGTAAAAAGAAGGATAATTTCTGATGTGAAATAAAATTTATAATAATTGTTTTACTTTGATAAAAAAAGGGAATTTAACATAGTAGAAATGGTACAAAAATAGGTCATAGATTTTGATGTTAGAAGGTTTTATAAATTTATACTGTAATTTTGAAAAAAGGGTTAAATTTTTCTAAAAGAACTATACATGTTAATCTTAAATTATGCTTCTTTGATTATTTTTTATAGAACAGAAGGTTATGAAACATTTTATATATTAATTCTCCTTATATAATTATAGGTTTTGTAGACGGATTAGAGCACTTTAAGTACATCATTCTTTTATTTATTTTTTAATAAAAAATAATTTCTTACATGAATTTGAATGAAGGAACTTCTTAAAAGTGAATTAAGAGTATTTTTTTTATTGGCAATAACTTAATTATTTTAATTAAGTTAATTAAGTGTATTATTTATCACATAATGATTATTAGGAAGAACTTACATAAAAAAATTTACATGTGTGTTATTTATGACATAGGCTGAAGTTTCAATGTTTCAATCTCAACTGTTATACTGGAAAAGTCTCCATGACGGACTAGCTGAAGAGAATACTGTGATGAGAGCACAATGCGACACTGCTTGTAAGCTCATTGCTGAAAAGGAAGGTAAATAGAATAATGTGTATGAAAGTAGTTGTACTTTTAATAGTAAAATTTAGAGCATTAGTATAAAATTAATAATGAGGTGAAACTTATACTTCTATCATATAATAAAACTGCTTTTGTTAACGTCAAAATTGTTATATAAGTTATAATATATATATATATATATATATATATATATATATATATATATGTTTTACAAATGTAGTTTCATATTTAAAATATTTCTTTAATACATGTTTTATGTTTAAAATCATTTGAATTGAGTTATAATTCTTGATTTTTTTTTTCACGAAACATGTTTCTTTTATCATTAGTTATAACTAGAATGAAAAACACATTAACTTAATGTATTTCAAATAATCATTTTATGTTAACAGAAATAACGAAAGTGATAAAGATATTGATAATAAAATACATCTCACTTAACGAATTTATGTTAAAGGAAATAGCCTCCTAGATACTATTCTCACAATATTATAAATTTCATAAATTAAGATTGTTTTAAGGATAAAAAATTGGAGAGTACGAATATAATAATGTTAGATTTGAGGAGGTTTCTAGTGCATCTCAAAGAAGAGAATTTAAAAATGTTTGTATGTTTTCTTTATGTTTAACCCATGCATGCATAGGGTTCTCTCTACCAATACCAGGAAAATTAAAAAAAAAAAGAGGTAATTTACATTTTAAGGATAAGTTGTATGAAGTCATGATGACTTTCAAATTAAAATCATTGTGAAGATAACTTCATAAAATTTTAAAAAAGTGAAATTGTCAAGACTGATAACGACTTCTTTGTAAATATGTTGAACGAAAGTCATTAGGAGTGGTTACAACTTTCAATTGAACCAAAGTCATCAAGACTATGACGACTTTCATTGTGGAACCGAGCTTGCTTTTCGAGCTTCTCCTCTATTGTCGAGCTTGACGAGCTCTCCACCAAGCTCTACATCGAGCTCTTCATTGAGTTCTTTGCATGATCTTCTAAGCTTTGTGAGCTATCTAAGCACCTCCCTTAGTTATCCAGTTGTCTAG