Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_35748	LG11	4095290	4095769	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	signal transduction, defense response to other organism, defense response to other organism, defense response to other organism, positive regulation of cell death, cellular component biogenesis, positive regulation of cell death, defense response
Cellular Component	located in	chloroplast, cytoplasm, cytoplasm, chloroplast, chloroplast
Molecular Function	enables	ADP binding, ADP binding

SNP	Position	Effect	Amino acid change
A/G	4095328	missense_variant	p.Phe148Leu
A/G	4095524	synonymous_variant	p.Ser82Ser
G/T	4095525	missense_variant	p.Ser82Tyr
A/T	4095648	missense_variant	p.Val41Asp
G/C	4095651	missense_variant	p.Pro40Arg
G/T	4095713	missense_variant	p.Ser19Arg

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_35748.1

MKNSEIDNSVLRAEMTKLSSRLWSLRFYDVFLSFRGEDTPVSFVSHLYASLQNAGIIVFKDDESLPRGDHISYSLLQAIEQSRVFVVVFSRNYAESQWCLNELVSIMQRHRTTGHVVLPVFYGVDPSEVRHQTGEFGKAFQSLSNRTFTEVLDFQPLSF*

CDS Sequence:
>Vu_35748.1

ATGAAGAATTCTGAAATTGATAACTCAGTTCTGAGAGCAGAAATGACTAAGTTGAGCTCTAGGCTTTGGAGCTTAAGATTCTATGATGTGTTTTTGAGTTTCAGAGGGGAAGATACGCCTGTTTCTTTCGTTTCACATCTCTATGCCTCTCTTCAAAATGCTGGAATCATTGTTTTCAAGGATGATGAGTCACTTCCAAGGGGAGATCACATCTCATACTCTCTGTTGCAAGCAATTGAACAGTCTCGAGTTTTTGTTGTTGTCTTCTCTAGGAACTATGCAGAGTCACAATGGTGTCTGAATGAGTTAGTGAGCATAATGCAGCGTCACAGAACCACAGGGCATGTGGTACTTCCAGTGTTCTATGGTGTTGATCCTTCTGAGGTTCGACATCAAACAGGCGAGTTTGGTAAAGCTTTTCAAAGCCTTTCGAACAGAACTTTTACAGAGGTATTGGACTTCCAACCTTTATCTTTTTGA

Promoter Sequence:
>Vu_35748::LG11:4095769-4097769(-)

TCTCAAAGCCGAACGGTAAAGCCCGTTCCCTAGGAAGCACTCCTAGGTCGAAGACCGAGCGGTAAATCCCCCTCGGGAGAGAGGTAAAGCCCTCTCAAAGACGAACGGTAAATCCCGTTCACTAGGAAACAATCCTAGCTCAAAACAGAGGTAAAACCCTCTCAAAGCCGAACGGTAAAGCCCGTTCCCTAGGAAGCACTCCTAGGTCGAAGACCGAGCGATAAATCCCCCTCGGGAGAGAGGTAAAGCCCTCTCGGTTCATGTTGAAGAACGAGCGGTAAATTCCTCTCGCTTAATGTCTAAGGACGAGCGGTAAAGCCCGCTCGGTTAAAGTCGAAGGCCGAGAGGTAAATCCCTCTCGGTTCATGTTGAAGGACGAGCGGTAAATCCCGCTTGGTTAAAGTCGAAGGCCGAGAGGTAAATCCCTCTCGGTTCATGTTGAAGGACGAGCGGTAAATCCCGCTCGGTTAATATCGAAGGCCGAGAGGTAAATCCCTCTCGGTTCATGTTGAAGAACGAGCGGTAAATTCCTCTCGCTTAATGTCTAAGGACGAGCGGTAAATCCCGCTCGGTTAAAGTCGAAGGCCGAGAGGTAAATCCCTCTCGGTTCATGTTGAAGGACGAGCGGTAAATCCCGCTCGGTTAAAGTCGAAGGCCGAGAGGTAAATCCCTCTCGGTTCATGTTGAAGGACGAGCGGTAAATCCCGCTCGGTTAATGTCGAAGGCCGAGCGGTAAATCCCTCTCGGTTCATGTTGAAAGACGAGCGGTAAATCCCGCTCGGTTAATGTTGAAGGTCGAGAGGTAAAACCCTCTCGATTAATGTTGAAGACCGAGAGGTAAATTCCTCTCGGTTCATGTTGAAGGACGAGCGGTAAATCCCGCTCGGTTAATGTCGAAGGCCGAGAGGTAAATCCCTCTCGGTTCATGTTGAAGGACGAGCGGTAAATCCCGCTCGGTTAATGTTGAAGGTCGAGAGGTAAAACCCTCTCGATTAATGTTGAAGACCGAGAGGTAAATTCCTCTCGGTTCATGTTGAAGGACGAGCGGTAAATCCCGCTCGGTTAAAGTCGAAGGCCGAGAGGTAAATTCCTCTCGGTTCATGTTGAAGGATGAGCGGTAAATCCCGCTCGGTTAAAGTCGAAGGCCGAGAGGTAAATCCCTCTCGGTTCATGTTGAAGGACGAGCGGTAAATCCCGCTCGGTTAATGTCGAGGGTCGAGAGGTAAAGCCCTCTCGGTTAACGTAGAAGACCGAGAGGTAAATTCCTCTCGGTTCCTATTGAAGGACGAGCGGTAAATCCCGCTCGGTTAATGTTGAAAGTCGAGCGGTAAAACGCTTTCAATTCCGCCAACACAGCCTCCCTCAAACTCATCAGTCCTATAGTTAACCACGGCTAAAGCCAACCGCTTAACTCGGACTTGGGGGGCATAATGTATAGTATAAAATATTAACCGAGTGGTTACAAACAACCAACCGGATATTCAGGTAATCTGTTTATATCTTATTCTGTTTATATTTTATTGGGCTTATATTAGCTCAGGATCCATGAGGTAAATTATAAATACAAAGCCAGGGCCAAAAGCCAGGTACCTTCCACTTACGCATTATTTACTCTACATGACTCTAAAATACTCAAGAGTGATAACCACTCACTAAATATTCAACCAAGAGCCGAGGCTCTTCAAATCTCACGCCTAACTTGAGCGTCGGAGTATCTTTTGCAGGTACATCCACCCCCGTCCAAAAGGAGACCGATCGGCTTGCGCCAACACCGATCGGCCAACAGCTGGAGTTTGGAAGCGAGCGAGCGGCCCAGACGCGTCAACAGGTTAGTCTCTCGGTCCCCAAAAGTATCCACCGAAACAACATCGAACCGGGAATCAGCGAGGAAGTATCGAATGAGGAAACAGAGGCACTTGGAAGGTCTGGTTGCAACGGTGGCCCAGCTCAAGAATGAGAATCAGCGTATTATCCAATCAATCAATATCGCTAACCAACGT

Gene Sequence:

>Vu_35748(-)