Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_35608 LG11 2180502 2184980 PREDICTED: myb-like DNA-binding protein BAS1
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 2180503 splice_region_variant&synonymous_variant p.???561???
A/G 2180551 synonymous_variant p.Leu545Leu
T/C 2180585 synonymous_variant p.Lys533Lys
T/A 2180621 stop_lost p.Ter521Cysext*?
T/C 2180651 stop_retained_variant p.Ter511Ter
T/C 2180661 missense_variant p.Tyr508Cys
A/T 2180682 missense_variant p.Met501Lys
A/C 2180724 missense_variant p.Val487Gly
A/C 2180763 missense_variant p.Met474Arg
G/A 2180838 missense_variant p.Ala449Val
T/C 2180949 missense_variant p.His412Arg
T/C 2180996 missense_variant p.Ile396Met
G/C 2181005 synonymous_variant p.Ala393Ala
C/A 2181053 missense_variant p.Leu377Phe
A/G 2181055 synonymous_variant p.Leu377Leu
T/C 2181133 missense_variant p.Thr351Ala
A/C 2181136 stop_lost p.Ter350Glyext*?
A/G 2181181 missense_variant p.Ser335Pro
C/T 2181231 missense_variant p.Arg318Gln
T/C 2181283 missense_variant p.Thr301Ala
T/A 2181423 missense_variant p.His254Leu
T/C 2181470 synonymous_variant p.Leu238Leu
G/A,* 2181475 stop_gained p.Gln237*
A/C 2181503 missense_variant p.Phe227Leu
T/C 2181509 stop_lost p.Ter225Trpext*?
T/C 2181518 stop_lost p.Ter222Trpext*?
A/T 2181520 stop_lost p.Ter222Argext*?
G/C 2181523 missense_variant p.Gln221Glu
G/C 2181524 missense_variant p.Phe220Leu
G/A 2181529 missense_variant p.Pro219Ser
G/A 2181532 missense_variant p.Arg218Cys
T/A 2181534 missense_variant p.Tyr217Phe
A/T 2181627 intron_variant
T/G 2181629 intron_variant
A/C 2181644 intron_variant
T/A 2181700 intron_variant
T/C 2181709 intron_variant
A/T 2181873 intron_variant
T/A 2181874 intron_variant
G/T 2181875 intron_variant
A/T 2181889 intron_variant
A/C,* 2181930 intron_variant
A/G 2181947 intron_variant
G/A 2181959 intron_variant
A/T,* 2181970 intron_variant
T/C 2182099 intron_variant
C/A 2182119 intron_variant
C/T 2182142 intron_variant
G/T 2182264 intron_variant
T/C 2182303 intron_variant
T/C 2182322 intron_variant
T/A 2182334 intron_variant
G/A 2182366 intron_variant
T/G 2182369 intron_variant
T/C 2182405 intron_variant
T/A 2182415 intron_variant
A/G 2182424 intron_variant
A/C 2182429 intron_variant
A/T 2182436 intron_variant
G/A 2182526 intron_variant
T/C 2182536 intron_variant
T/C 2182594 intron_variant
T/C 2182616 intron_variant
G/A 2182629 intron_variant
T/A 2182653 intron_variant
A/G 2182719 intron_variant
A/G 2182728 intron_variant
C/T 2182834 splice_region_variant&intron_variant
G/T 2182992 intron_variant
A/C 2182995 intron_variant
C/T 2183247 intron_variant
T/G 2183316 intron_variant
A/G 2183325 intron_variant
T/C 2183326 intron_variant
T/G 2183336 intron_variant
T/A 2183373 intron_variant
A/G 2183421 intron_variant
A/G 2183422 intron_variant
T/C 2183639 splice_region_variant&intron_variant
T/G,* 2183646 missense_variant p.Lys112Asn
G/A 2183649 synonymous_variant p.Asp111Asp
T/G 2183767 intron_variant
C/A 2183819 intron_variant
G/A 2183822 intron_variant
A/G 2183975 intron_variant
A/G 2183976 intron_variant
A/G 2184012 intron_variant
T/A 2184082 intron_variant
G/T 2184189 intron_variant
C/T 2184323 synonymous_variant p.Lys68Lys
G/T 2184385 intron_variant
A/G 2184439 intron_variant
G/C 2184473 intron_variant
G/T 2184557 intron_variant
A/T 2184611 missense_variant p.Val51Asp
C/G 2184952 missense_variant p.Cys10Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_35608.1
MTEEKSEQLCLKNKQIDAASSSSVSDGNGSAIPSSSRKTGSALPCNRRTTGPVRRVKDGWTEKEDETLKNAVEVFNGKNWKKIAEFFPDKSEVQCLHRWKKVLNPELVKGHWTKEEDDKIIELVSIHGPTKWSLIAQSLPGRIGKQCRERWCNHLSPDIKKDPWTLEEELALMKAHCTHGNKWAEIAKVLCGRTDNAIKNHWNGSLKKKKDFYLANGRLPPIPMSSMKVSVKDTVKHSTTNTIHVYSNKGLDATVASSSKATDITKLDNSDKNQLESSGIVGEVGDSSSVPPKKCADSDCVHYNRLFHKGLRCSNLESGSGDNFKINRGPKFVNPGLNANQRIDHCLNYSDMNGDRSTRIFYSKESRTFGSFCHESSRLDNPHPSESLNFNMSSGLQNKYISSPMKSSAGFVTPPHVKGIESCSESIESILRKAAKTFPTPSIIRKRRNGGELPATPRKLANAVNSHVCNEEVRTNDVSCSGVVGLSVSPASHGHGSNILQNNALNMTPLYRLRSKQTAVKSLTKQLDSAFYMEKSASEMEKSTESVVMTEDSLHKTKLAET*


CDS Sequence:
>Vu_35608.1
ATGACTGAGGAGAAATCAGAGCAGCTTTGTTTGAAGAATAAGCAAATCGATGCTGCTTCTAGTTCTTCTGTATCAGATGGAAATGGCAGTGCTATTCCCTCATCATCAAGGAAAACGGGATCAGCATTGCCGTGTAATAGGAGGACCACTGGTCCTGTTAGACGGGTAAAGGATGGTTGGACGGAAAAGGAGGATGAAACATTAAAGAATGCTGTTGAAGTTTTTAATGGCAAGAATTGGAAGAAAATAGCTGAGTTTTTTCCGGATAAATCAGAAGTTCAATGTCTTCACAGATGGAAAAAAGTTCTTAATCCTGAACTTGTTAAAGGACATTGGACAAAGGAGGAGGATGATAAAATAATTGAACTGGTGTCTATACATGGACCTACAAAATGGTCTTTGATAGCCCAATCATTGCCCGGTAGAATAGGAAAACAGTGCCGAGAACGATGGTGCAATCATCTTAGTCCAGACATAAAGAAGGATCCCTGGACTTTGGAGGAGGAATTAGCCCTTATGAAAGCTCATTGTACACATGGCAACAAATGGGCTGAAATAGCCAAGGTTCTATGTGGAAGGACTGATAATGCAATAAAGAATCACTGGAATGGTTCTTTGAAGAAAAAGAAGGATTTCTATTTAGCTAATGGAAGACTACCGCCCATTCCAATGAGCAGTATGAAAGTTTCTGTCAAAGATACAGTTAAACATTCTACAACTAACACAATTCATGTTTATTCGAATAAAGGATTAGATGCCACTGTTGCATCATCATCTAAAGCTACAGACATTACTAAGCTTGATAACAGTGATAAGAATCAACTAGAATCCTCTGGAATAGTTGGAGAGGTTGGAGATTCTTCTAGTGTTCCACCAAAAAAATGTGCTGATTCTGATTGTGTACACTACAATAGATTATTCCACAAAGGTCTCCGCTGTAGTAACTTGGAATCAGGGTCGGGAGACAATTTTAAAATAAACAGGGGGCCAAAATTTGTGAATCCTGGACTCAATGCTAACCAGAGAATTGATCATTGTCTGAATTATAGTGATATGAACGGTGACAGATCAACTAGAATTTTTTATTCAAAGGAAAGTCGAACGTTTGGTTCTTTTTGTCATGAATCATCACGGCTTGATAATCCACATCCTTCAGAATCTCTTAATTTTAACATGTCTTCTGGCCTGCAGAATAAGTACATTTCTTCACCAATGAAGTCATCTGCTGGTTTCGTAACTCCACCTCATGTGAAGGGAATTGAATCATGCTCAGAATCTATTGAATCAATACTGAGAAAGGCAGCTAAAACATTCCCAACTCCTTCAATAATAAGGAAGAGAAGAAATGGAGGCGAATTACCTGCCACTCCCAGAAAGCTTGCAAATGCAGTTAATTCACATGTTTGTAATGAAGAAGTGAGAACAAATGATGTTTCTTGTTCTGGAGTTGTGGGGTTATCTGTCAGTCCAGCTAGCCATGGCCATGGGAGTAATATTCTTCAAAATAATGCTTTGAACATGACTCCTCTATACCGATTAAGATCCAAGCAAACAGCTGTTAAGTCTTTGACGAAACAACTTGATTCTGCATTTTACATGGAGAAAAGTGCTTCTGAGATGGAAAAGTCTACTGAGAGTGTTGTGATGACTGAAGATAGTCTTCATAAAACAAAATTGGCAGAGACATAG


Promoter Sequence:
>Vu_35608::LG11:2184980-2186980(-)
TGTATCTTGTTGTGTGTTTCATTATGGTTGATATAATCAATATATATGTATCTTGTTATTATGATTGTTTTATCGGTAGCTTACCCCATACATGTGTGTGTTTGTGGGTTTGTGAATGAAATTATCAGCGATTATTGTATAATATGTTATATGTGAGCAAATGATATTGTAGATGTTCTAGAGACATGATAGATTTGTGAGATGACAAAGAAAGATTTAGATTTCTTTAAAAAGTTATTTTTTGGTACAGACTTTTGAAACAAAGTAATTATAGTTGTTTTATTTCCTTAATATTTTAATTACTTTTGAAATAATGTAATTAAACCATACTTTTAAAACTATAATGTTTTGAATAAATTATGCATATTAAAAAGTTACATTTTTTAAAAATACATTTCCACGTTAAGTTTTAAAATTTATCCGCTTTTATAATATCGTGGCTTTCCAGAATTCGGGTGTTACATAGTATATAGCAAAAATTTCATGCTTATTAAGTATGAATACGAGAATCTGTTTAAAAGATAAAAACGAAGATAATCATAATTGATGTCTCAACTTATTTCATCTTAATTCAAATATAAATGATGACATGGCATTCAGAAAACACTTTAAATTTTCAGTATGATATCGTTATTCGTAATACTTTAATCTTTTATCTCTTTTAATATATTATTTGAATTTAAATCGAATTAAAATGTATTTAAAATAAATTATGAATAACTAAAAAAAAATAGTATATCACACTGTAAATTAGTTTTAATAAATTTAAAATGTGTTTGATATGCTTGAACATATCATTTATTATAAATTTTAATTTTCAAAATTTAAAATTTATTATTATAATTTTTATTTATACAGAATTAATATTAATATTTATACTTATTCTGTACAAAGGCAAAAATATTTGATACCTATTAAATTAAAAATAAAACATAAAAGTCACACCGAGTTAGTTAATATACAAAGAAAAAGAAGATATAATTTCATTCAGTAATAGATAAAGTAAGAGTACCTAAATCTAAGGTGCGTATTTTATAAGATATATACAAATTCTGATAAAAGAAAAATATAAATGTGAAACGGTAACTAAAGTCGTGGCTTGATTCTGTTTTCAATCTTTGAATGGTAATTGAATCCTTAATTAATTTTTCAAATTAGAAAATGTTGTATTTTAAAATAAGTATTATTTTTATCATTTGGAAACTAACAATGATTTTAATTTTGTTTATCTCAAGAATAATATCTGGATACTATAAATATATATTTTTAAAAGGCTAAAATATTTGAGAAAATAAAAGCAGATTCATTCTCATTGGTTAATTAATAAAAACAGCCTAAATTAGTTATGCACTATTATTTTATTGTTTTTAAACTTAATTTGATTTTTTCTTTTTCCTTTTCTTACGTGTTTCCAACGGGTTACCAGTTTTCGAAAGCCATTGTTACTCTTTTCGGTAGCTCTTCGTAGTTTCTACCTCCTTTCTTCTCTCTATTCCCGCCACTTTTCTGCTAATAGTGGAGGTATCTCTTCTCTTTCACGTAAATTCACGGTTTTGTTTCATTTTGTTTTTCTTTGTCAACTTCTGTGCACTCTCAGTCTCTCTTTCTCTATCAAGGTAACTTGTATGTCTTGAAGGAGTTTTTGCGTTTTTTTTTTTTGTTTCCACTGTAGGTTTCGACTTTTGGGTCACAGAACTTACTATCATGATTTGATTATTACTATTTGTGAGTGTGGTTAAGGCCTTGGTTTTTTATAACGGGCTTTTTTGTTTTGGAGTTTTTTTCACGTTGGTAGTGCTATTATTTAATAACGGCTTCTGGGAATTGAAGTTTTTGTCGTTTACCTTTAAAGATTGAAACTTGTTGTGTTTTAGAGGGATTTTGATATTTTCATGCGAAATTCAATAGATGTATACAGTTTTCCGTGCCATTTTTTAGGAAGTTATCTGCAATGGTTTATTGATTGTGATTTTGGGTTTTGGTGATGATTTTAGAAGGAG


Gene Sequence:
>Vu_35608(-)
ATGACTGAGGAGAAATCAGAGCAGCTTTGTTTGAAGAATAAGCAAATCGATGCTGCTTCTAGTTCTTCTGTATCAGATGGAAATGGCAGTGCTATTCCCTCATCATCAAGGAAAACGGGATCAGCATTGCCGTGTAATAGGTAACTTTGTTTTAAGTTCTTTAATTGTTCTCCTGTATTGATCATAGTGTTGCAGTTTGCTGTTTATATGTTGTTGCTTAATTTTACATGTTGTAGCAATACCTGATTTTACTTTTTTCTTTGGAGAATTCTTTGTTGGTTTACTTCCTTTTTCATTGTTTTTTCTACAATCTTTCTGCACTGGATTTCATTTTGTGAATGCTTTAATTGTATGTAGGAGGACCACTGGTCCTGTTAGACGGGTAAAGGATGGTTGGACGGAAAAGGAGGTTAGTCTCTGGGACGTTTGTTCAGTTGCCAAATCTTTTTGTTTTAGTTTTTTAATTTTCACGTGCTTGCTTCTTAGGAATTGATTACCTGGTGAATTCGGGTTACTAGATTTAATGACTGCTATATATTTGTATATTTATGGTTTAGCTCATTGTATATTGAATTCAACATATTTGTATTCATTGCTACTCCTACTTGGAATTGAATTTAGTGCTTTCTTTAACTTGCTGCAGGATGAAACATTAAAGAATGCTGTTGAAGTTTTTAATGGCAAGAATTGGAAGAAAATAGGTATATACTTCTATTTGCTATGTAGTGACGACCTTTGATATTGAGTTAAAAGTTTATTTGCTGTTGCATGTTGGTAAAATCAGCGTGAGTCGAGTGACTTTGTTGCGGTGTATTGAGTGTTTGAACTTGAGATATTAGAATTGAAGGACTAAGATTGTTGGTTTCTAAAATAAATTGCGCAATGACCCAATAAATATAGTTTTGCAGAGCTCCTGTTTACAGTTTTCCATTTGCAGAGCATACTCATCGGAGCGTAAAAAACTAGAATATATCTTAAAAAGCCTTGACGATGAACTTATTAGCTTAAGTAAAAAGTCAGAATTAAACCAAGGAAACTAAAGTTCTTAAATCTCTATTTTCATCTTTCCTTAATGTTTGAATGCTTTATTTTTTGTGAAGGAGAATTCATATATGGGTGAACCAATGGAATTATTTTGTGTGATGTGACCATAATCATCATGTATGCAAGATCTTTTGTATTGAGTGCTTTCTGAAAGCATTATGGTCATTTCATTAAATTGATTTATCAAATGTTGAATCCAGCTGAGTTTTTTCCGGATAAATCAGAAGTTCAATGTCTTCACAGATGGAAAAAAGTTCTTAATCCTGAACTTGTTAAAGGACATTGGACAAAGGAGGTAAAACCTAGTCCTTTCCTTTTCTATTTTTGTTATTTTCTAACAATCCTATTTTCTAACTTCTCCTAGTTGACATGCAGGAGGATGATAAAATAATTGAACTGGTGTCTATACATGGACCTACAAAATGGTCTTTGATAGCCCAATCATTGCCCGGTAGAATAGGAAAACAGTGCCGAGAACGGTAAGGGTAACTGAATTTTGCGTGAAATTTTTCTCTTTTTTTAATTAATTCTTTGTATTGATAAATCCTAAACTTCATTGTATTATTTAATTAGAATGTTTAGCCTCTGAAGTTCTAAAACATCTCATCAGATTGTACTTAAATTTAAAGAATAACTTTCTTCAGAATATTATAAGATTTTACTACAACTCGTAGCTTTGTTTGTGTATGGGCTACTCAAAAGATTAAGTTGTACGAGCTTTGTTATTTTTGCTTTACATTGTACGAACTTTTTTCAGAATATTATAAGATTTGACTACAACTCGTATCTTTGTTTGTGTATGGGCTACTCAAAAGATTAAGTTGTACGAGCTTTGTCAGTTTTGCTTTAGATTTTTCCTGGTATTATTATATACTCTGTTGGTTAATAAATCCTTCATGAACACCAAATACATGCGCATTGGCTTTGGTATATATGTTCATTATCATGAAGTTAGTTTCAAACATTTACAGATGGTGCAATCATCTTAGTCCAGACATAAAGAAGGATCCCTGGACTTTGGAGGAGGAATTAGCCCTTATGAAAGCTCATTGTACACATGGCAACAAATGGGCTGAAATAGCCAAGGTTCTATGTGGAAGGTGTATTTTCCAATTAATTCTTTAGCTGTCATAAATGAAATTAAAGTCATAATTAACATCTAACAAGTTTCATTGAATGCTAGTTGTGGAGTTTGATTTATTATATTATTATTCTTTTTCTCTTTTTAAATAATGAAAATCATTGGAGGATGTACTGTCATAGACTCCTTTTGAAGGAAATTTAGTTTTCAACCCACACACGTTCCACACAAAGGAAAAAAACAGGGAAAAAGAATAATGCAATGAAGAAAAATGCTATAGTAGTCAGTAGTTGCTACTTTATCCATTGAAGACAATATTAATCTTACTTCAATAGTTATTAAAATATGCTTTTAGTCCTCATAAATATGGTCCAATTTGGTCTGAGTTTTTTAACTTTTTTTCTTATAAGTTTTAAGTATTTTATATGGTGTGTATCACCATGCTCACTGATGATGTAGCAATGATATGCCAAAATGTTGCTATTTAACCAAATGATGATTCAGACCATTTCAAATATCTTAAACTCTACAAGACTCAAACATACAAATAATATTACGGAGCTTAAACCAAATTTAACCATATTAGCAAGACCCGAAGAATATTTAAGTCAATTTTAAATGACAGTTCTTCCAGTTGAGTTTTCCCTTGAATATACGTAAAACTTTTTATTTTTTTATATTCTTGTCATGGTTTCTGACAGAAACTGGTTTAGGAAATGCCCTCTGACCCCTAACAGCGTGATGAGAAGGCCAGACATCATCATAATGTAAAAGGAATTCTTTCTCTACTCCCAATGTGTTCAAGAGACGTGTTTTTCCCTTCTGATTTCCGTCTAAAACCAAAGAAGCTCTTTGTTCTTTCCTTTCTATTATTTATTCCCTATCTTACTTCCTTTCTATCTAACTAATACAACTAACAATCTTCTTTTTCTTTATAACCAAAGATTGGACAATCTTTAGCTGGAGTATGCAAACAGTTTCATTCCATGGAGAATTTATTTCTGTTGAAACAATGATAGATCAATCTGCCCAATTTCATTAAAAAGTATTTTTGTGAAAGTACTTAGGATTCCTTTTTTTGGTACAAAATTATATAGTTCATATGTAGAATGTATCACTGTACAATAATAAATACTCATGTGTACCAGTTTCTATATATTCTTTTGTATTGCTTTCAATTGTATCATACATTGAATATATATGTTACAAATTTTCATACCCTTTACATTATTTTTTTCTGCAGGACTGATAATGCAATAAAGAATCACTGGAATGGTTCTTTGAAGAAAAAGAAGGATTTCTATTTAGCTAATGGAAGACTACCGCCCATTCCAATGAGCAGTATGAAAGTTTCTGTCAAAGATACAGTTAAACATTCTACAACTAACACAATTCATGTTTATTCGAATAAAGGATTAGATGCCACTGTTGCATCATCATCTAAAGCTACAGACATTACTAAGCTTGATAACAGTGATAAGAATCAACTAGAATCCTCTGGAATAGTTGGAGAGGTTGGAGATTCTTCTAGTGTTCCACCAAAAAAATGTGCTGATTCTGATTGTGTACACTACAATAGATTATTCCACAAAGGTCTCCGCTGTAGTAACTTGGAATCAGGGTCGGGAGACAATTTTAAAATAAACAGGGGGCCAAAATTTGTGAATCCTGGACTCAATGCTAACCAGAGAATTGATCATTGTCTGAATTATAGTGATATGAACGGTGACAGATCAACTAGAATTTTTTATTCAAAGGAAAGTCGAACGTTTGGTTCTTTTTGTCATGAATCATCACGGCTTGATAATCCACATCCTTCAGAATCTCTTAATTTTAACATGTCTTCTGGCCTGCAGAATAAGTACATTTCTTCACCAATGAAGTCATCTGCTGGTTTCGTAACTCCACCTCATGTGAAGGGAATTGAATCATGCTCAGAATCTATTGAATCAATACTGAGAAAGGCAGCTAAAACATTCCCAACTCCTTCAATAATAAGGAAGAGAAGAAATGGAGGCGAATTACCTGCCACTCCCAGAAAGCTTGCAAATGCAGTTAATTCACATGTTTGTAATGAAGAAGTGAGAACAAATGATGTTTCTTGTTCTGGAGTTGTGGGGTTATCTGTCAGTCCAGCTAGCCATGGCCATGGGAGTAATATTCTTCAAAATAATGCTTTGAACATGACTCCTCTATACCGATTAAGATCCAAGCAAACAGCTGTTAAGTCTTTGACGAAACAACTTGATTCTGCATTTTACATGGAGAAAAGTGCTTCTGAGATGGAAAAGTCTACTGAGAGTGTTGTGATGACTGAAGATAGTCTTCATAAAACAAAATTGGCAGAGACATAG