Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_35310 LG10 20369153 20369803 PREDICTED: scarecrow-like protein 34
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 20369155 stop_lost&splice_region_variant p.Ter174Glnext*?
T/G 20369183 synonymous_variant p.Ile164Ile
G/A 20369192 synonymous_variant p.Thr161Thr
C/T 20369197 missense_variant p.Glu160Lys
T/C 20369203 missense_variant p.Lys158Glu
G/A 20369205 missense_variant p.Ala157Val
G/C,A 20369228 missense_variant p.Asn149Lys
T/G 20369232 missense_variant p.Glu148Ala
C/G 20369249 missense_variant p.Lys142Asn
A/G 20369258 synonymous_variant p.Leu139Leu
A/G 20369259 missense_variant p.Leu139Pro
G/A 20369262 missense_variant p.Thr138Ile
G/A 20369265 missense_variant p.Ser137Phe
A/G 20369266 missense_variant p.Ser137Pro
A/G 20369269 missense_variant p.Ser136Pro
G/C 20369281 missense_variant p.Gln132Glu
G/A 20369286 missense_variant p.Ala130Val
C/T 20369287 missense_variant p.Ala130Thr
C/A 20369291 synonymous_variant p.Leu128Leu
G/C 20369293 missense_variant p.Leu128Val
C/T 20369302 missense_variant p.Ala125Thr
C/T 20369312 synonymous_variant p.Arg121Arg
T/A 20369316 missense_variant p.Gln120Leu
G/A 20369317 stop_gained p.Gln120*
A/G 20369320 missense_variant p.Ser119Pro
C/T 20369324 synonymous_variant p.Leu117Leu
G/A 20369327 synonymous_variant p.Phe116Phe
C/T 20369347 missense_variant p.Gly110Ser
A/T 20369354 synonymous_variant p.Gly107Gly
C/A 20369355 missense_variant p.Gly107Val
A/G 20369357 synonymous_variant p.Ala106Ala
G/A 20369358 missense_variant p.Ala106Val
C/T 20369362 missense_variant p.Gly105Arg
C/T 20369370 missense_variant p.Arg102His
G/A 20369371 missense_variant p.Arg102Cys
C/A 20369382 missense_variant p.Gly98Val
C/T 20369389 missense_variant p.Ala96Thr
G/A 20369390 synonymous_variant p.Phe95Phe
G/T 20369393 stop_gained p.Tyr94*
G/A 20369396 synonymous_variant p.His93His
T/C 20369402 synonymous_variant p.Val91Val
G/A 20369410 stop_gained p.Gln89*
C/T 20369411 synonymous_variant p.Ser88Ser
G/A 20369412 missense_variant p.Ser88Leu
A/T 20369424 missense_variant p.Phe84Tyr
G/T 20369430 missense_variant p.Ser82Tyr
A/G 20369433 missense_variant p.Phe81Ser
T/C 20369450 synonymous_variant p.Thr75Thr
C/T 20369461 missense_variant p.Glu72Lys
A/G 20369463 missense_variant p.Ile71Thr
C/T 20369467 missense_variant p.Ala70Thr
T/C 20369470 missense_variant p.Thr69Ala
T/C 20369491 missense_variant p.Met62Val
C/T 20369492 synonymous_variant p.Leu61Leu
T/A 20369502 missense_variant p.Asn58Ile
T/A 20369506 missense_variant p.Arg57Trp
C/T,A 20369507 missense_variant p.Leu56Phe
C/T 20369513 synonymous_variant p.Val54Val
C/T 20369515 missense_variant p.Val54Met
T/A 20369519 missense_variant p.Glu52Asp
C/G 20369521 missense_variant p.Glu52Gln
T/C 20369525 synonymous_variant p.Lys50Lys
C/T 20369532 missense_variant p.Gly48Glu
C/T 20369547 missense_variant p.Arg43Gln
C/A 20369557 missense_variant p.Gly40Trp
T/G 20369576 missense_variant p.Lys33Asn
A/G 20369593 splice_region_variant&intron_variant
G/A 20369597 splice_region_variant&intron_variant
A/G 20369600 intron_variant
A/T 20369616 intron_variant
C/G 20369626 intron_variant
C/T 20369630 intron_variant
G/A 20369632 intron_variant
C/T 20369640 intron_variant
A/G 20369641 intron_variant
G/A,* 20369649 intron_variant
C/T,* 20369653 intron_variant
C/T 20369667 intron_variant
T/C 20369682 intron_variant
C/T 20369687 intron_variant
A/G 20369689 intron_variant
C/T 20369695 intron_variant
G/T 20369708 intron_variant
A/G 20369715 splice_region_variant&intron_variant
T/C 20369758 missense_variant p.Lys16Glu
T/C 20369759 synonymous_variant p.Leu15Leu
A/G 20369771 synonymous_variant p.Phe11Phe
A/G 20369784 missense_variant p.Phe7Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_35310.1
MFNDVDFVSQFRRGLKEATKLLPSGPKLSGAVKGEERDGGKDRSKKKGRKKETVDLRNLLLMYANDIRTAIELLTQIRQHFSPFGDASQKVAHYFANGLDARLVGAGSGGHEQFSFLNSQRITAAEYLKAYQVFLSSTLFKKFTYFFENTMIMEAAAKSETVHIIDFGILYGF*


CDS Sequence:
>Vu_35310.1
ATGTTCAATGATGTTGATTTTGTTTCCCAGTTTAGGAGAGGATTAAAGGAAGCTACCAAGCTTCTTCCTTCTGGCCCTAAGCTTAGTGGAGCAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAAAGGGAGGAAAAAGGAAACTGTGGATTTGAGGAATCTTCTACTGATGTATGCCAATGACATTAGAACTGCCATCGAATTACTAACACAAATTCGGCAACACTTTTCTCCCTTTGGAGATGCATCGCAGAAGGTAGCTCACTACTTCGCCAATGGTCTTGATGCACGCTTGGTTGGGGCTGGTTCTGGCGGTCATGAACAATTTTCTTTCTTGAACTCTCAGAGGATTACTGCTGCAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACCCTTTTCAAAAAGTTTACATATTTCTTTGAAAACACAATGATTATGGAAGCTGCTGCAAAATCAGAAACCGTCCATATAATTGATTTTGGCATCCTATATGGTTTCTAG


Promoter Sequence:
>Vu_35310::LG10:20369803-20371803(-)
AAAACATTAAGCTTAAAAATTTATGCATAAAGTAATTTAATTTTACAAAATATTTGTACCCGTTTTTATGTAGAATTTTGAAAAATATTTGTACCCGAATTTTATGTAGAATTTTATAAATTAAACTTGAAAAACATTTCAAACTTTGAATTTTCAATATACATACAATCGACTTTCTAATTCTTGTATTGATAGTCTGTCAAGTTTCCTTTATCAAAATTTGTTGAATGATATGTTATTCATCTCTTGAATTCCTAATTTTTTTTTACTGACAGTTTTTTTTTAGTTTTCATGTTTATTAATTTTGTAATTAGTGCAAATGTTGTAATTCTTTTTCTCTTTGTCATATTTTTAGAAAGAATTTGTGTTATAGTAGGAAGACAACTCATAATGGTGCATCATCTTGATCAATATTTATTTAATTTAAAAATGGAATAGTTTTTTAGAAAAAAAATATAAAAAGCTTCATTTTACTAATTCTTACCTATGCACGTCACACATGTTTCCATAATACACAAATCATAATTCTTGGACGATAGGAGGACAGCAAAAATTATATTTGCAAATATTGGTGAGTAAAATTCTTTTTAGTACGAAATTTAATTGCTTTTATTAATGGACAGTACTAATAAGAATAAAAAGAATTGTAGCCATGTATGTATATATGTATGCATATAATTTTATAAAGTAATTTTTGTTACGAAGACTTTTGGAATTGAAATCATTTATAAAAAAGATAATTTCAGTTAAAAGTTACTAGTATTATGAAACAATTTTATTATTATTATTATTTTTTTATTATTATAATAATAATAATTATTAAAATAAATTACTTTAGAAATTATTAAAATAATAATATATTAAAATAAATTACTTTAGAAATTATTTAAATTTAAATTAGTTAATTATTACTTTTACTTTATTTACAATTTTAATTATTTACTTAAAAACATAATTATTAATAAACTGTTAACAACTACAATCAATTATGATTTATATTCATACTTTTCTTGTGTGGAAACAAATTAATTACGTTGAAAAATCTTTATATAGAATCAGATGCAGATTACTTTTTTGAATTTTATAAGTAAAAACTGAATAACATATTTCAACTAATGACTAATAAACAAGTTGGTAGTGTAAAAGAACGAAAAGATAACACTGACAAAAAGAGAAAGATCTCTTGGGTTAGAAGTAGAGGAAAGAGAAAAAAAAAAGTTAACGCTGTTTGTGCGACAGAAAGAACTTGATTGAGACAAATTTTACTAAATAAGGATGCAATTGACGCTTTTTTAAAAGGATGACTAACTTGACACACTTGATCGACTGGGAACAAAATAAGTAATTAAGTCTATAAATTAAATTAAATATAAATTAAAATTTAATTTTAATTAAATTTAACCTTATAAAATATAAATTAATTTTAATTTTAATTAAATTTAGGTTTAATGTCTCAATAATTCCCTATTTTCATCTAGAATCTCAAATAGGTATTCTTCTTTTTTGGCGTCTCAATTGAGTCCTTATTTTTGTAAAATTGATGCAAATAAAGATTTTTCGTCAAATTAATCAAACGACGTTAAGGATTCTGTCACCTGACATGCTGACATTGTAGTTTTAACATACATGTCATTAAAAACGTGTGTCAATTCTTTTATTTTAAATTTTGAATTAAAAGATTAAGTAAACAGAGTGGAAATTTAATTAAAGAAAAGGGTAAAGTTGGGAATTCGTATTCTACTTTTTGTTGAAAGCCCCACTCTCTATGGTGAAATCGAAATGAAATTGGGGAAATTTGAATTTTAGGGCTCATCACTCATCCACAAAATCCTTGTTGTTCGATTGGAAGCGCGAGTGTTGGTGGGTGAAGAACATCGACTTGAAATAACTGTGCATGTGCAACTAGAAATATCGTTTTCTTTTCTCAGCCACCTTTGTTTACTGTTAGTCATGGATTCTCATATTTGGATTCTTCTATCGCCAAACTATTGGCACAAAAT


Gene Sequence:
>Vu_35310(-)
ATGTTCAATGATGTTGATTTTGTTTCCCAGTTTAGGAGAGGATTAAAGGAAGCTACCAAGCTTCTTCCTTCTGGCCCTAAGCTTGTAATTGGTCTCCATTCAAACGGTGAAGAATAGAAAAATAATTTTGGAAATCGTGGGTAGTGAACAGATGCTATAGATTGGGTGTTTCTGAGTGTGGAAAACCTGGGTAGTGAACACAATTCCTTGTAGAGTGGAGCAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAAAGGGAGGAAAAAGGAAACTGTGGATTTGAGGAATCTTCTACTGATGTATGCCAATGACATTAGAACTGCCATCGAATTACTAACACAAATTCGGCAACACTTTTCTCCCTTTGGAGATGCATCGCAGAAGGTAGCTCACTACTTCGCCAATGGTCTTGATGCACGCTTGGTTGGGGCTGGTTCTGGCGGTCATGAACAATTTTCTTTCTTGAACTCTCAGAGGATTACTGCTGCAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACCCTTTTCAAAAAGTTTACATATTTCTTTGAAAACACAATGATTATGGAAGCTGCTGCAAAATCAGAAACCGTCCATATAATTGATTTTGGCATCCTATATGGTTTCTAG