Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_35278	LG10	19911320	19914673	putative disease resistance protein RGA4	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/T	19911470	stop_gained	p.Tyr1068*
A/C,*	19911472	missense_variant	p.Tyr1068Asp
T/A	19911474	missense_variant	p.His1067Leu
A/C	19911479	synonymous_variant	p.Thr1065Thr
T/A	19911481	missense_variant	p.Thr1065Ser
A/G	19911487	missense_variant	p.Tyr1063His
C/T	19911499	missense_variant	p.Ala1059Thr
G/A	19911503	synonymous_variant	p.Arg1057Arg
C/T	19911504	missense_variant	p.Arg1057His
T/G	19911538	missense_variant	p.Lys1046Gln
C/A,T	19911546	stop_gained	p.Trp1043*
T/C	19911558	missense_variant	p.Glu1039Gly
C/T	19911559	missense_variant	p.Glu1039Lys
G/A	19911566	synonymous_variant	p.Thr1036Thr
T/C	19911568	missense_variant	p.Thr1036Ala
C/T,*	19911581	synonymous_variant	p.Leu1031Leu
C/*,T	19911616	missense_variant	p.Asp1020Asn
A/G	19911627	missense_variant	p.Val1016Ala
A/G	19911634	synonymous_variant	p.Leu1014Leu
T/C	19911643	missense_variant	p.Ile1011Val
T/A	19911690	missense_variant	p.Lys995Met
A/T	19911703	missense_variant	p.Ser991Thr
T/C	19911748	missense_variant	p.Asn976Asp
A/G	19911749	synonymous_variant	p.Ser975Ser
G/T	19911756	missense_variant	p.Ala973Glu
C/G,T	19911757	missense_variant	p.Ala973Pro
A/T	19911765	missense_variant	p.Val970Glu
A/G	19911772	missense_variant	p.Cys968Arg
A/G,*	19911786	missense_variant	p.Val963Ala
A/T	19911788	synonymous_variant	p.Gly962Gly
A/G	19911794	synonymous_variant	p.Ser960Ser
G/C	19911800	synonymous_variant	p.Ser958Ser
C/T	19911803	synonymous_variant	p.Lys957Lys
A/G	19911808	synonymous_variant	p.Leu956Leu
G/T	19911828	missense_variant	p.Thr949Asn
T/C	19911829	missense_variant	p.Thr949Ala
T/A	19911835	missense_variant	p.Thr947Ser
C/T	19911862	missense_variant	p.Val938Met
T/G	19911869	synonymous_variant	p.Pro935Pro
G/T	19911871	missense_variant	p.Pro935Thr
C/T	19911881	synonymous_variant	p.Val931Val
C/G	19911910	missense_variant	p.Glu922Gln
C/T	19911953	synonymous_variant	p.Val907Val
T/G	19912041	missense_variant	p.Glu878Ala
T/C	19912053	missense_variant	p.Glu874Gly
G/C	19912091	synonymous_variant	p.Val861Val
T/G	19912098	missense_variant	p.Glu859Ala
G/C	19912104	missense_variant	p.Thr857Arg
G/C	19912126	missense_variant	p.Leu850Val
A/T	19912162	missense_variant	p.Leu838Met
C/G	19912167	missense_variant	p.Arg836Pro
G/T	19912187	missense_variant	p.Asn829Lys
C/G	19912221	missense_variant	p.Gly818Ala
A/T	19912223	missense_variant	p.Asp817Glu
T/A	19912231	missense_variant	p.Thr815Ser
A/C	19912232	missense_variant	p.Asp814Glu
A/C	19913753	synonymous_variant	p.Ala307Ala
G/C	19913754	missense_variant	p.Ala307Gly
A/C	19914194	stop_gained	p.Tyr160*
A/T	19914203	missense_variant	p.His157Gln
T/C	19914204	missense_variant	p.His157Arg
A/G	19914212	synonymous_variant	p.Ile154Ile
A/C	19914213	missense_variant	p.Ile154Ser
G/C	19914244	missense_variant	p.His144Asp
C/A	19914265	missense_variant	p.Val137Phe
C/T	19914268	missense_variant	p.Gly136Ser
A/G	19914308	synonymous_variant	p.His122His
A/T	19914322	missense_variant	p.Ser118Thr
A/G	19914377	synonymous_variant	p.Leu99Leu
G/A	19914379	missense_variant	p.Leu99Phe
A/T	19914387	missense_variant	p.Leu96Gln
T/A	19914434	synonymous_variant	p.Ser80Ser
C/G	19914500	synonymous_variant	p.Val58Val
T/A	19914551	synonymous_variant	p.Ile41Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_35278.1

MAEALLGLVIQNLQSFGQDQLATFWGVHQQTQKLSSNLTAIRAVLRDADRKQIKSHAVKDWLQKLTDAAYVLDDILDECSIHSTKVNFDDRHTSCLSRLHPKDILFRFNIGKRMKDISQRFHDIHEERSMFNLEPGVTEVQTIHDNWRQTSSDITEHIVYGRGQDREQILKFLLEDVSDNEDLSIYPIVGMGGLGKTTLAKQVFNDHRVCKHYDLTIWVCVSDDFNTMTILQSIIECITGQNPHLNSLEAMRRKVEEVLHGMRYLLVLDDVWNEDPEKWKQLKGKLQCARAAKGATILVTTRLEEVASTMQTHPAYHLKELSGDDCWSLFKHHAFGPNREEMEELVSIGKEIVRKCVGSPLAIKTLGRLLRDESDVKQWQNVKESEIWDIREESSSATGEENSIMRALKLSYFNLELSLRRCFSFCAIFPKDFEIDKEELIHLWMANGFIKCEGNVEVEDVGNKVWKKLYSRSFFQEAKYDEFGMITTFKMHDLFHDLAQSIMGEECVVIMKGRLTPLSTTVHYSSLFNSGVSSVDMTGQRFMTALKKVESLRTFLDYGGIGLMPTNHCVRALQISSSFLSPLKDLTLLRYLNLRCSRSSEENLNNSICQLLKLQILKLFHLPKLHGLPKDLTQLQDLRHIVIDGMDITQEMSPNIGKLRHLRTLSIFVVGSKPGCGLAELHSLNLGGTLRIGGLENVPNERDAKQANLIGKKDLNILRLSWDGNANPKGSNLSVERVLEALEPPSTLKSFEMNGYKGRQISSWMRNRAVLKDLVDVTLSNCDNCEDLPPLGKLPHLKRLSVSGMKNVKWIDGDTYDGVEEKAFPSLENLGVKNLRNLERLLRDEGVEMLPRLSQLTIEGVLNFKVPRLPCVEELSVERIGEAASFMEVVGNMAFLKTLSIEIIKGVVVLPDEFRRLGALQELYIAEWYDVEYFPEHVLEGLTSLRTLTIHYCKKLKSLSEGVRHLACLVSLAISNCPELVALPSNMSQLSALRKVSINYCCTLPNGLQRIPSLRVLYIDECTCTSLPDWLGDMTTLEELTIWYCKELRSLPSSIQRLANLSYLTIHYCPHLKKRCNRETGEDWQYIKHIQRLELLFTRKQTFCGKFNSILRSVHIK*

CDS Sequence:
>Vu_35278.1

ATGGCCGAGGCTTTGCTCGGACTTGTAATTCAAAACTTGCAATCTTTTGGCCAAGACCAACTTGCTACGTTTTGGGGTGTTCACCAACAGACTCAAAAGCTTTCCAGCAATCTCACTGCAATACGTGCTGTACTCAGAGATGCTGACAGAAAACAAATAAAAAGTCATGCTGTGAAAGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGCTTGATGATATCTTAGATGAATGTTCAATTCACTCCACAAAAGTGAATTTTGATGATCGACATACTTCATGCCTATCCCGTCTTCATCCTAAGGACATTCTCTTTCGTTTCAATATTGGCAAGAGGATGAAAGACATCTCCCAAAGATTTCATGACATTCACGAAGAAAGGAGCATGTTTAATTTAGAACCCGGTGTCACAGAGGTCCAAACAATCCATGATAATTGGCGCCAAACTAGCTCTGACATTACAGAACATATAGTGTATGGTAGAGGCCAGGATCGAGAGCAAATTTTGAAGTTTCTTTTGGAAGATGTGAGTGACAATGAAGACCTCTCTATCTATCCCATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAGCCAAGCAGGTTTTCAATGATCACAGGGTATGCAAACATTATGACTTGACAATTTGGGTTTGTGTTTCTGATGATTTCAACACCATGACAATACTACAATCCATCATAGAATGCATCACTGGACAAAATCCCCATCTCAATAGCTTAGAAGCAATGCGGAGAAAGGTTGAAGAAGTGTTGCATGGGATGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCCAGAGAAATGGAAGCAGTTGAAGGGGAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTGGTCACTACTCGACTCGAGGAAGTTGCTTCCACCATGCAAACGCATCCTGCCTACCATTTGAAAGAATTATCAGGAGATGATTGTTGGTCATTGTTCAAACACCATGCGTTTGGACCAAACAGAGAAGAAATGGAAGAACTGGTGTCAATTGGCAAAGAGATAGTGAGAAAATGCGTTGGTTCACCGCTTGCAATCAAAACATTGGGAAGGCTATTACGCGATGAAAGTGACGTAAAACAATGGCAGAATGTAAAGGAAAGTGAGATTTGGGATATACGGGAGGAAAGTAGTTCTGCGACAGGTGAGGAAAATTCTATCATGCGTGCTTTGAAATTAAGCTATTTTAATTTGGAGTTGTCATTGCGGAGATGCTTTTCTTTTTGTGCAATTTTTCCCAAAGATTTTGAAATAGACAAGGAAGAACTTATTCATCTCTGGATGGCTAATGGATTTATTAAATGTGAAGGAAATGTAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAAGAAATTATACAGTAGATCATTTTTTCAAGAAGCTAAGTATGATGAATTTGGTATGATCACTACTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAGGAATGTGTGGTTATTATGAAAGGAAGATTGACTCCATTGTCAACTACAGTTCATTATTCAAGCTTGTTCAATTCTGGTGTGTCGTCTGTTGATATGACTGGTCAAAGATTCATGACTGCTTTGAAGAAGGTTGAATCCCTCCGAACTTTTCTTGATTATGGCGGTATAGGCCTGATGCCAACAAATCATTGTGTCCGAGCATTGCAAATAAGCTCTTCTTTTTTGTCCCCACTCAAGGATTTAACACTTTTGAGATACTTGAATTTGAGATGTAGTAGGAGTTCGGAAGAAAACTTAAATAACTCAATTTGTCAGTTGCTGAAATTGCAAATATTAAAATTGTTTCATTTGCCCAAACTTCATGGGTTGCCTAAGGACTTGACACAATTACAGGATCTGAGGCATATTGTGATTGATGGCATGGATATAACACAAGAGATGTCTCCAAATATTGGCAAGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATAGTTTAAATTTGGGAGGCACGCTAAGAATAGGAGGCCTTGAGAACGTTCCGAATGAAAGGGATGCTAAACAAGCAAATTTGATTGGTAAGAAGGACTTGAATATCCTGCGCTTGTCATGGGATGGTAATGCTAATCCAAAAGGTAGTAATTTAAGTGTGGAGAGAGTACTGGAAGCCTTGGAACCTCCCTCAACTCTCAAGAGTTTTGAAATGAATGGATATAAGGGAAGGCAGATATCGAGTTGGATGAGAAATAGAGCAGTTTTGAAAGACTTGGTGGATGTTACACTCTCCAACTGTGACAACTGTGAGGATCTTCCCCCACTTGGTAAACTACCACACTTGAAAAGGCTAAGCGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGATACGTATGATGGTGTGGAGGAAAAGGCATTTCCATCGTTGGAGAACTTGGGTGTGAAGAATTTACGAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGATGCTCCCTCGTCTTTCCCAATTAACAATTGAAGGTGTCTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGGAACTTAGTGTTGAAAGGATTGGCGAAGCGGCTTCCTTCATGGAAGTTGTGGGGAATATGGCTTTTCTAAAGACCTTGAGCATTGAAATTATTAAAGGAGTGGTGGTATTACCCGACGAATTCAGGAGGTTGGGTGCACTACAGGAACTATACATTGCAGAATGGTATGATGTGGAGTATTTTCCAGAACACGTGCTGGAAGGTCTAACTTCTCTTCGAACTTTGACCATTCATTACTGTAAGAAATTAAAGTCCTTGTCTGAAGGTGTGCGACATTTGGCTTGTCTTGTGAGTTTGGCGATCAGTAATTGTCCAGAGCTGGTGGCTCTACCAAGCAATATGAGTCAACTATCTGCCCTGCGGAAGGTTTCAATCAATTATTGCTGCACATTACCAAATGGCTTACAACGTATCCCCTCCTTACGAGTTTTATATATAGACGAATGCACGTGTACTTCATTGCCGGACTGGCTGGGAGACATGACTACCCTTGAAGAATTAACCATTTGGTATTGTAAGGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCGCCAACTTGTCTTATTTAACTATACACTATTGTCCTCATCTGAAGAAGCGATGCAATAGGGAAACAGGAGAGGATTGGCAATACATAAAGCACATTCAGCGATTGGAACTACTTTTCACGAGGAAACAGACGTTTTGTGGTAAATTCAATAGCATTTTGCGCAGTGTACATATTAAATAA

Promoter Sequence:
>Vu_35278::LG10:19914673-19916673(-)

TTAGGTTTTTCTGTTAAATCTTTAGAGTTGTAGAATTTTAGTTAAAATTACGTTTTTAGGGATAATTTTTAGTATTTGTAAATAATTAGGATATTAATATTTTTTTTAGAGAAAATCTTTTAATAAAAATCTTTTTCTTTACTTTTCTTTTAATTTTTGAATTGCTGAAATATTTCTTTTATTTTTATTTTTTGGCATTAATTCATTTTCTTCTTATTGCAGAAAGGCCCTAAAAATTGGATTACAAATGCAAAGTAATTGGGTCGTTGGTGCAATGTACATTGAAAAGCATGTACGTTAAAAATTTACTTTTATTGATTTTTTGAACCCGTTAACCATTCCGTTGTGATTGGTTTTTTGACCCGTCGATAACCATTCCGCTGTGTCTCTCTGACAGAAAGGATTGCAAACAAGAGAAATGAAAAGAAGCCGAGAGAAGAAAAGAGAGAAAGACCATAATAAAAAAACCGTGAACTGAATGAATATTGTGTTATTCAACTAAGCAGAGAAAGAGGCCATAATATAGCCAAACAATGAAGAAGATTGAAGCTAAACTGTTGTTCATACGTTAGGAAGGAGAGTTGACTTTAGATTTTCTCTTAAGTTGGAAGTGGGCAGTATGTTTTTACGCTAATACTGTTATCTTTGGTTTCACATTGCAAATTTCCATTTTTGTTTCTACTTTTATTAATATATTTTTCTCATGGTAAAAAGAAAAATAGATGGCTAATCCTGACTCATATAGGCTTTAGAGATATTTGATCCTGTGACTTTTTAAATGAATTTTTTTTTTATTCTATGAGCTTTTTTGGCCTCAACGTTAAAACCAAATCTTATAAAATGGGCTGCTTTGACAGGTTTAATGTCAGCTAATTAAGTCACTCATTTTGGGTTAATACAATTCTTAAAGTACTTTCAATTTTTTCTTTTGATCTCTCAATATTTGTTAATATGTTTTTTCCCATTCATATGATCATGTTTTATGCTGATAGAGTAAAGAAAGAAACTTAATACAAGTAATTTATTAGCATTCCAATAGTGTAAATAAACATGTAAACTAAGTATGAAAGAAAAACCCTAAAAGAATATATTTGATTAAATAACTAAATTAAAAGAAAAGTTATTGAATAATTAAAACATAAGTCAATAATATATTTATTACGTCAAAATTATTAAGCTGACAAAATTATCATTATTATGATCAGATAACAAGGCCTCCATAGAGATAACTTATACATAGTTGGTTCTCCTCTCTTCATGATTTTTGGTACGTTAAATTCTAACTGTTTCACTTAGTATTTTAAAAAATGGTTGAACGACCACTAGAGAGTGACAAAATAAGTTACCCAAAGCAACTTTTTCCCAGTTGGGTCATGAGAGCACAACATACAAAAAGATATAATATGATAAACAAGAGCCAATATTTCAACATGATGAAAAGACAGTTAAATTAAATTTTTTCGATAATAATGATTTAATGAATAAAATACCTAGACAATTTGTTACCAAAACGCTTCTGCTATGAGTTAAAGTACCGTTTTCATGAAAAATCTAATGGAATTTTAAATTTTACGTAAGTTTAAATTGGTTGTATCCCTATACATAATATTCTAATTTATTAATTTGAAAAATCAATTTCTTTAATATCTTTGTGGTATCGACTACAAGTTTCACTAATTCTGTATTAATGTTTTATAAATTATTGCCGAAATAAGTGATAAACACGATGTGGAAAAAGCTGTGAAATTTGAGCGCAAATGAAGGAGAAAGTGAGTGGACATGTTTGTGGAGTGCAATGACAGGAAGAGAGCGACGTTAGAACGCAATTATATGGTTGGTTTGACTTGACTCCTTGTATGAACACTCCTCGTAAACAAAAGCATACGGGGGCCACTTGCGAAGTAAGAAAACAACACGCTATTTCCAATTCAAACAAAGCACTCTTCCCCATGCTTCCTTCTCCACAGTCATAATCATCCGAAAACCCCTCCTTTCTGCAA

Gene Sequence:

>Vu_35278(-)