Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_35247 LG10 19392785 19395112 PREDICTED: trihelix transcription factor GT-3b-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   mediator complex
Cellular Component   located in   nucleus, nucleus, nucleolus
Molecular Function   enables   DNA-binding transcription factor activity, sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
A/T 19392801 3_prime_UTR_variant
G/T 19392858 3_prime_UTR_variant
T/A 19392920 3_prime_UTR_variant
T/A 19392923 3_prime_UTR_variant
A/T 19392952 3_prime_UTR_variant
T/A 19392979 3_prime_UTR_variant
A/C 19393080 3_prime_UTR_variant
G/C 19393081 3_prime_UTR_variant
G/C 19393236 synonymous_variant p.Arg266Arg
T/A 19393813 downstream_gene_variant
A/T 19393844 downstream_gene_variant
C/T 19393845 downstream_gene_variant
G/T 19393888 downstream_gene_variant
G/T 19393897 downstream_gene_variant
T/A 19393923 downstream_gene_variant
T/A 19393960 downstream_gene_variant
A/G 19394007 downstream_gene_variant
A/G 19394054 downstream_gene_variant
G/C 19394145 intron_variant
A/G 19394225 intron_variant
C/T 19394446 intron_variant
A/T 19394534 intron_variant
G/A 19394545 intron_variant
A/C 19394559 intron_variant
A/C 19394671 intron_variant
A/G 19394692 splice_region_variant&intron_variant
T/A 19394700 stop_gained&splice_region_variant p.Lys109*
G/A 19394842 synonymous_variant p.Arg61Arg
G/A 19395013 synonymous_variant p.Gly4Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_35247.1
MFGGGGEDAFAARLGMVTPSLMNPATSLVMSGEVSAAVREERGPAQPQWSQQETREFISIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHSRQCPFFEELHAVFTQRAHNMQRLLLESETRSAQTKKGVKRSSGDRSSEELSEDDDEVEYDSEEEKPSRSNTRKRKVDKVGTDKSSSRANNPSNAVNSSTSSIQEMLKEFFQHQLRMEMQWREMMERRAHERQLFEQEWRQSMEKLERERLIIEQAWREREEQRRMREESRAEKRDALLTTLLNKLINESN*


CDS Sequence:
>Vu_35247.1
ATGTTCGGTGGCGGAGGGGAGGACGCGTTTGCGGCGCGGCTTGGCATGGTGACGCCGTCGCTGATGAACCCCGCGACGTCGTTGGTGATGTCCGGGGAGGTGTCAGCGGCGGTGAGGGAGGAGAGGGGACCCGCGCAGCCGCAGTGGAGCCAGCAGGAGACGCGGGAGTTCATATCGATACGCGCGGAGCTGGAAAGGGACTTCACTGCGTCCAAGCGGAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTTCAGGAGGAGCCCTGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGACCCAGAGCATAGCAGGCAATGTCCATTTTTTGAAGAATTGCATGCAGTATTTACCCAAAGGGCACATAATATGCAACGATTGCTTCTTGAATCTGAAACTCGCTCAGCTCAAACCAAGAAAGGAGTGAAAAGATCAAGTGGAGATCGATCTTCAGAGGAACTCTCAGAAGATGACGACGAGGTTGAATATGACAGCGAAGAGGAAAAACCTTCTAGAAGCAATACCCGCAAAAGAAAAGTTGACAAAGTTGGAACGGATAAGTCTTCTTCAAGGGCAAACAATCCATCGAATGCTGTCAATAGTAGTACTAGTAGTATTCAGGAAATGCTAAAGGAATTTTTCCAGCACCAGTTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAGAGACGTGCTCATGAAAGACAGTTGTTTGAACAGGAGTGGAGGCAGTCGATGGAGAAGCTTGAGCGCGAGAGGTTAATTATTGAACAGGCATGGAGGGAGAGAGAAGAACAGAGGAGAATGAGAGAAGAGAGTAGGGCGGAAAAAAGGGACGCCTTATTGACGACCCTTTTGAACAAACTCATTAATGAATCTAACTAA


Promoter Sequence:
>Vu_35247::LG10:19395112-19397112(-)
ATACCCATGAACAACACAAAAACGATCATGACACATAATTATAACCACTAATTAATAGATACTCATATAGAAGACTTCAACGCTACATGCGAACCAAGATTATTCATATGCTTATGAACCAATGAAAGGAGTATAGAAATCATCTTACTATGTTAGAGAAACTGATTAGACAGAAATGGACAACTCGTCGCAAAGATCACTCGAATAGTTTTTTATCTTTAAACAAATGAATAAAAAGTGAGAAAACCTAAAGAGAAAAAAAAGAGCTTTAGGAAAAAGGTTTTTAGAAAAAATATATGTTTTTAAATAATAAAATTTGATAAAAATTTAATTTATACTTTAAACTTTTAATATTAAAATAATTGAGTATTATCTTTCTAAACATACTATCAATTTTAAAACACAATTTTCTATACTTTTACCCTGTCGTATATAATGTTTTCAGACTTAGAAAGAAAAATTGCAAAAATAGAACCTTTAATTTAAAGGATTTTCCCCGTACTCAAACGATTTTCTAAATTCTTAAAAAAAATCATAATTTTCATTAAGAATTATTACATAAAACAACACACTTTTACTGTAAAAAACACACAACTTGATAGTTCCAACTTCACATAAGAGCAATACCAGCAAATTTTAATAGTCTTAAATGATACGAATAAACAACTTAAGTTAAACGTAATCAGTTTTCACCTTTAGTCTCTTAGTCAAATTAGATCCATTATTCAAATAAAAAGGTAACAGACACTGATATAGTAGATATCACTTGTTCTCTTAAGTTCATCTCAGTTTATCTTTTCCGTACAACCTGATTGGAGTAAAGGTTTATTATACTCGGTATTATTTCAATCAAATTTAAAATATAGTAATTTTCTTTAAGATATTTTTCATGTTACCTTTAGTTGTGTGAGCATGTTTGTCAATTTAAAACAAAAAAATATTAAATTGTTTTATTTCTTTGGACGGGCCAAAATGTACAATCCAACTTAATCTGCTAAGTTGGATTAGAAAAAAAAAAAGTACAATCCATTAACGCAACACAGAGGTGAATAAGATTAAAAAAAAAAGTACAATCCATTTAAAAATAACGCCAACTTAATCTGCTACAAATTTTTAACTTGACTGATAGGAGGGAATCTAAAATTATATCTCGTATCGTTGATCAAGAATATTCATAAACAAGGAAGCCCATCACCTGAGTTGGGCCTGAAGCCCAAATTGAATTAATTGTATCCAAAGTAAAAAATAACACATTTAAACTTTATTATATTAAGTCGTAGAATTAAATTTATTATAGAAATTCCAGTTAATTATTGTTCATTAATCAACAGCTTAAAGTATTTATTAAAGTGCAGAGTAAATAGTCTTCAGGATTGGAATTTTAATACCCTACCTAACCTAATATCCTCCTATTTGAAGATAGAGAACATTCTAGTAACAGCGAAAATCAAGAGTTGCCGGTCATAGCACATTTCTGCCAAATAGGAAAACTATCTTTCCAACGTTAAATCATCATTTCCAAAATTTCAACTTCTTAAATACCAGAATACAACGTATCAGTGCAGATAAATACACGCAAAAGGAGGGAGAATATTTTTATCTTTAATAAATAAAAAAATAGTTGAAAAATTAAAATACATTAAATTAGAGTGAGATGTGTAATAGATTTAATTTATAGCTATAAATAAAAAAGATAAGGTGTTTTTTTAAGTAATATTTTTAATTTGGTTTGTTCCAATTTCCGGCGCATCCACCCTGGAACGGCGTAACTTTTACACCGACAACGGAGAAGGGGAAACGGCGTGAATTAAATGAAGGGGCAAAAGAGTAAAACCGGAAATAACGTTACCGTTTTCAGGAGGCAGATTTTCACACGTAGCTAGCTATAGTCAACGATTCCTGTCTTGTCCACAAAGCAAACTCGGAAAACCGAAAAGTAATTGAAAAAAAGAACGAAAAACAAAAAGGATATTTTTTCCGAGGCTTCCACCAGCTCCAGT


Gene Sequence:
>Vu_35247(-)
GCACCACTTCCGTTTTTTGAGTTTTCGCATTTCCAAAACCCTAATCACGAATTCACATTGAAACCACATCGGGGTGGTGAAGAGGTCAATGTTCGGTGGCGGAGGGGAGGACGCGTTTGCGGCGCGGCTTGGCATGGTGACGCCGTCGCTGATGAACCCCGCGACGTCGTTGGTGATGTCCGGGGAGGTGTCAGCGGCGGTGAGGGAGGAGAGGGGACCCGCGCAGCCGCAGTGGAGCCAGCAGGAGACGCGGGAGTTCATATCGATACGCGCGGAGCTGGAAAGGGACTTCACTGCGTCCAAGCGGAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTTCAGGAGGAGCCCTGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGTCTTTATCTCTTTCTATTTCTTTTTTATTTAGCGTCTGTTGCCGATTTTGTTTGTTTGTTTGTGGCGTTTTCATTGTTCATGATTTTGGAGCAGAGTTTGGCATTGTTGTTATCTCGTTAAATCTTTTTGTTGATGTTCAGTTTGACTGTTCTTCTGCCAACTGGAGTAATGAGTGATATACACCTTTGTATGTGACATTCATTTGAATAATTTCAGACATTATAAAATGTGATTGGACTTCGGTCGGAAGGGAGAGATAGGAGTGAGAGAGACACAAAGTGTCCGATAGTTGTGTTGTGATAGGAAAAGATGAGATTGACATGAAGAAGGAAAATGGAAGAAAAAGTAAATATATGTTTATTATAACAACTCTATGATGTTTGTGACCACTAAGTATGATCCATTGAATTGTTTAAGTTCATCTATATGAAGCTTTGTTCATATGCCCAAAGGGTTGGGAGGAAATATGTTGGGTTTGTGGCTTAGATTCAATTGAATGGCCCATATATAATGGACCGTGTTTGATGCAGCTATATGTCGAGAGTTGAGTCTTTGCTAACAGTTCAAGCTTTTAGTATGGTCATAACCGCTCTTGATAATATAATTTATGGCGTATCTGGTTATAGGGTGTGCAATGTGTTTGCTAGAGTCTAGCAGCATTTTTGTTTTTCTGGTTGAATTGGTCTGGTCCCAACCCGTGTTCATCTCAAAGCTACAATTTAGTGCTTCCCAGTAAACACTTGTTTGGAATGTGAGCCAGTGAAATACAAGTAAATCCAAATATGCTATAGGCCAAATCTTAAGAAACCCCCCTCTAACTATGTTGATGTGGAAAAAGTTCCTGTAGGGAGTTTGTGTGTATGGTTGAGCGACTTTATTTTGATCTGCATTGGTGCAAAAAAATATTTCTTTAAAAATGCAGAAAAGAAATATCTCAAAGATGGCGGTGTTCACTTTACCCAGTAAATTATGTAGCAATATTTTTGCAGGGAAAAGAGACATCTGACCCAGAGCATAGCAGGCAATGTCCATTTTTTGAAGAATTGCATGCAGTATTTACCCAAAGGGCACATAATATGCAACGATTGCTTCTTGAATCTGAAACTCGCTCAGCTCAAACCAAGAAAGGAGTGAAAAGATCAAGTGGAGATCGATCTTCAGAGGAACTCTCAGAAGATGACGACGAGGTTGAATATGACAGCGAAGAGGAAAAACCTTCTAGAAGCAATACCCGCAAAAGAAAAGTTGACAAAGTTGGAACGGATAAGTCTTCTTCAAGGGCAAACAATCCATCGAATGCTGTCAATAGTAGTACTAGTAGTATTCAGGAAATGCTAAAGGAATTTTTCCAGCACCAGTTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAGAGACGTGCTCATGAAAGACAGTTGTTTGAACAGGAGTGGAGGCAGTCGATGGAGAAGCTTGAGCGCGAGAGGTTAATTATTGAACAGGCATGGAGGGAGAGAGAAGAACAGAGGAGAATGAGAGAAGAGAGTAGGGCGGAAAAAAGGGACGCCTTATTGACGACCCTTTTGAACAAACTCATTAATGAATCTAACTAACTGAAGCAAATGGTTTGGGTTCCTTATAACTGATTACTTTGTTGTTTCTATTTATATATGATTTTAAGTATAGCACAGAATGGACTAAATTTTACAGTAGCTTTTGATTATGGAGAATTTTAGAAGGAGACCTGGATGAAGAAAAGAATATTTATAGGAGTATATGAACATTTTCTCTTGAAAATTGATATAGAAAGTTTTTATATGAACTATTATTTAGGGATACTTCTGTTTGGCATTACGTTCTGGGACATGTAACTAAAAACAGGTATTGTTTACAACTTTGTATAATAGTTGATAAATTTTATATTTTTTTCCT