Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_35142 LG10 17961548 17966980 PREDICTED: protein RKD5 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/T 17961598 splice_region_variant&intron_variant
A/G 17961608 upstream_gene_variant
G/A 17961923 upstream_gene_variant
G/T 17962026 upstream_gene_variant
C/G 17962064 upstream_gene_variant
G/A 17962128 upstream_gene_variant
G/C 17962186 upstream_gene_variant
T/A 17962410 missense_variant p.Lys264Met
G/A 17962454 upstream_gene_variant
A/T 17962555 upstream_gene_variant
A/C 17962574 upstream_gene_variant
C/G 17962935 upstream_gene_variant
A/T 17962982 upstream_gene_variant
C/G 17963024 upstream_gene_variant
G/A 17963069 upstream_gene_variant
T/A 17963077 upstream_gene_variant
G/C 17963099 upstream_gene_variant
T/G 17963102 upstream_gene_variant
G/A 17963447 upstream_gene_variant
T/A 17963476 upstream_gene_variant
C/G 17963526 upstream_gene_variant
G/A 17963562 upstream_gene_variant
T/C 17963571 upstream_gene_variant
A/C 17963672 upstream_gene_variant
C/T 17963676 upstream_gene_variant
T/C 17963721 upstream_gene_variant
G/C 17963730 upstream_gene_variant
G/T 17963733 upstream_gene_variant
A/T 17963743 upstream_gene_variant
T/C 17963751 upstream_gene_variant
G/A 17963852 upstream_gene_variant
G/A 17963878 upstream_gene_variant
C/T 17964352 upstream_gene_variant
T/C 17964395 upstream_gene_variant
G/T 17964464 upstream_gene_variant
G/T 17964604 upstream_gene_variant
A/G 17964655 upstream_gene_variant
A/G 17964688 upstream_gene_variant
C/A 17964707 upstream_gene_variant
T/A 17964734 upstream_gene_variant
G/C,* 17964766 upstream_gene_variant
T/C 17964767 upstream_gene_variant
T/A 17965015 intron_variant
A/G 17965083 intron_variant
A/T 17965319 intron_variant
A/C 17965513 intron_variant
T/A 17965653 intron_variant
A/T 17965863 intron_variant
G/T 17965997 intron_variant
C/T 17966021 intron_variant
T/G 17966032 intron_variant
A/G 17966096 intron_variant
T/C 17966127 intron_variant
T/A 17966129 intron_variant
A/G 17966319 intron_variant
G/A 17966453 intron_variant
G/C 17966634 missense_variant p.Gln67Glu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_35142.1
MDSSPTNNTTLLTNLLLFNNTVQPELMRSLHVYRQGDEEERAVEREFLFSECGSYVEMQATPILKFVKSHVSQVFQGYKNGVWLCIFAFHADHTPRFCRIPPLLLVSRNPKLQMVPNLLHDLHVIYKLDRKEEDKDTTLGSTGEECQGNSNNFQPSEKVFPVLDQDLNYLPYEEDESELLDNETDVESSPGLLGKKKRAPSDLVAKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKSQELEDMEAAMAVAKRQRMLECEKENIEKKPFMDIQTETKRFRQDVFKRRHRARAVGKHNSTVRALAYIALQQKLIATLIDDYAALSATMTWIYK*


CDS Sequence:
>Vu_35142.1
ATGGATTCCTCGCCGACCAACAATACCACTTTGCTCACCAACTTACTACTCTTCAATAACACCGTCCAACCAGAGTTGATGAGGAGCCTGCATGTGTACCGGCAAGGGGATGAAGAGGAAAGGGCAGTTGAGAGGGAGTTTTTGTTTTCAGAGTGTGGATCCTATGTGGAAATGCAGGCTACCCCAATTCTTAAATTTGTCAAATCCCATGTTTCTCAAGTGTTCCAAGGGTACAAGAATGGAGTGTGGCTTTGTATCTTTGCGTTTCATGCTGATCACACTCCTCGATTTTGCCGCATTCCTCCGCTTTTGTTGGTCTCAAGAAACCCAAAGCTTCAGATGGTTCCAAACTTGCTCCATGATCTCCACGTGATATACAAGTTGGACAGGAAGGAGGAAGACAAAGATACAACTCTAGGATCTACAGGGGAAGAATGTCAAGGGAACAGCAACAATTTCCAACCATCAGAAAAAGTCTTTCCCGTTCTTGATCAGGATCTCAATTATCTTCCTTACGAAGAAGATGAGTCTGAGTTACTAGACAATGAGACAGATGTTGAAAGTTCACCAGGTTTGCTAGGGAAAAAAAAGAGGGCACCCAGTGACCTGGTAGCAAAAATTTCCTTATCAGATTTGGTCCAGTACTTTGGTATGCCAATCGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAGTCACTTGATAGTCTCATTCATGATCTTCAGGAAGAGGCAAAGAGCCAAGAATTGGAGGACATGGAAGCAGCAATGGCAGTGGCCAAGAGACAAAGGATGTTGGAGTGTGAAAAGGAAAACATAGAGAAGAAGCCCTTCATGGACATTCAAACCGAAACAAAGAGGTTCAGGCAAGATGTTTTCAAGAGAAGACACAGAGCAAGAGCTGTTGGAAAACATAATTCTACAGTACGTGCGCTTGCTTACATTGCATTGCAGCAAAAACTGATAGCCACTTTGATTGATGATTATGCAGCACTTTCCGCGACGATGACTTGGATCTACAAATAA


Promoter Sequence:
>Vu_35142::LG10:17966980-17968980(-)
GAGTGAGAAAGATGAAAGAGAAAGAGTTGAGAGGAATGAGAGAGGTGAGTAAGGGTTTAGGGGGTTTCTTTTTTTTTTTTTTAGTTTTGAGAATGAAAATTATTAAAATACCCTTAACCTTAAAACTTAGAATACATGGTATATAAGAATATTTTTGTCTACTAAAACCCAATACACATTGCTAAAATGTACCAACTGAAAAAGAGGCGTACGCGCGTTAGCAAACCCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATTAAAAATTTAAATATTTTCTTTTATTAAAGAAGATCATATAATTTTAAATCATTATTTTATTTAGATAATTGGATGTAATTAATATTTAGTTCAAGAATAATTTTTTCCGTTTAGCATTTAAATAATAAATTATCGATAACTTTTACACAACAAATAATTATGGACAACTGATGAAATTAATTTTGAAGAAGAAACTTATATAATTATTGCATTGTCTTAATTAGTATTATTTTCTTAAGTTTATTTTTATTTGAAATATAAATATTGTCAGTTCTTATATTGATTTTAAACTTAATCCTTATCTTCATCCATTTGATTTCTTGTAATTATAATATCGCTAAGAACTAATATTCAGTTTAAGTACAATAGGGATTAACGTTAAATAATTTTGAATTTATAAATATTTAAGAAAATTAAGTATAGTTATAGTCAAAAGTTGAATTTATTATGAATAGTAATTTAAAATAATAAATAAAATATTTATTTCTCCGCTAAAATATTGTTTTATTCTTTCTGTGGACATAAATTTTCTAAATTATTTTGTTTTTTTTAATTATGTAAAATGATTAAGAATGACATATAAATAATTACATTTAAATATTATTTCATTTAATTCATAATCATTTATTTATAGTTTTGTATTATTATAATATAGTTGTAAAATAATTATTTTAATGCTGAAATTATTATTTTTCTTATTTAAAATGAAAGAAACGTACTTATTTAAAACAATCTTCAAACAAGTTAGATATGTGGGATTCACTAAAATACTGTTTTAATGTTAAATAACTTGTATAAATATCTTTAACAGAAAATGTTTTTTTAATATTTTAAAATCATAATATCATGAAAATAAAAATAAACTATATTTTAGATGTTTCAAATTCTTTAATAAAAAATAGTCTTGATCTATTTATTTTATAAAAACAATTGTATTCTTTATTCTAATTATGGTTAATGAGTTTTATTTCTTATCTTATTTAATTCAAAATTTCAAAATAAATTAGATTTATAAATAATGTTACTATGATGAAATATTTTTTAATACATTTATTATGCAGATTACACTTAATACATGAATTAGATATTCATTAATTCTTTTAAGAATTTTAGAATAAATTATATTACAAATTTAGGAAAGAAATCTTAAACTTAACCCTATCCCATAAAAGTAACTTATGAAATTATACTTGTATCTGTTTTTATATTATAATCAGACTTAGTTGATGCGAAACCGTCAATGATCATAGTATTCTAAGATAAAAAAAAATTACTAATCATATAAAATATAAAAATATATTTTTTTCAAATATAGATATTGAAAATAATACTTGAAGTATTTTATTCTTAAAATAAATATAAATTTTCAGAAATGAAAAAAGAAAAAGAAAAAATGTATTACCATTGAGCGGTTAGACAATAAATTTACTTCTAAAAGGAGAGAACAAAAAAGGTGAAGAAAAATAAATGAAGAGAAAAAGAAGAGTGAGGAAGTGACAAAAGAAAAAGACTAAAGAGAAAAAAAGTACCTTATTTTAGCTGGGCATGATTCTAAACTGATCCGAAACCAACGAAAAAAGCGGAAGATCATGCAACCTTGCACTTAAAAAGCTGGTTTTTGCATCCTTCTATCAGTCCACGCTTCATGCTTCTTCTTACCCATTACTCATTTCACATTCTCATGCCATCTTCCATCTCTTC


Gene Sequence:
>Vu_35142(-)
ATGGATTCCTCGCCGACCAACAATACCACTTTGCTCACCAACTTACTACTCTTCAATAACACCGTCCAACCAGGTCATATCACAAGCCATCAGATTTTTCTTACTTGTTATTTTCATCACATGTTTTGTTTTTTATACAAAGAAATGATTTTTCTTTGTGGGGTGCTGAAATTTCGTTATTTATTTGTCTATTTCTGTTGTGGGGTGTGTGGATTGCAGAGTTGATGAGGAGCCTGCATGTGTACCGGCAAGGGGATGAAGAGGAAAGGGCAGTTGAGAGGGAGTTTTTGTTTTCAGAGTGTGGATCCTATGTGGAAATGCAGGCTACCCCAATTCTTAAATTTGTCAAATCCCATGTTTCTCAAGTGTTCCAAGGGTACAAGAATGGAGTGTGGCTTTGTATCTTTGCGTTTCATGCTGATCACACTCCTCGATTTTGCCGCATTCCTCCGCTTTTGTTGGTCTCAAGGTATATCTTCTTAGCCCATGTTTGTCTTTGACATTAGTCCTGAGGTTCAAAAAAAGGTCTGCAGCAGAAATCAGCAAGTTTTGGAGTCAATGTGGTCGCAATTCCGGCTGCATGCCATATTTGTCTGCAATTTCGCATTAATCCCTAGGTTTTGAGAAAGGGTGTGCAGCAGAAATTGGCTAGTTTTGGAGTTATTTTCATCACAATTGTGTTAGCGTTCAGCAATTTGACATTAGTCCCAAGGTTTTGAAAAACAGTCTGGGGCAGAAATGGGCAAGTTTTTGATCCATTAAGATCATGATCGCAGCTGGTGTGGCCGATTTTTGTCACATCAAGGATTCCCAACAAAAATTGTATCCCGAATCGTAGTTTAAAGCCTTGCATAAGTCCTACATAGTTAGCCTTGTTTGGTCCTTTGAATAATAGAACACTTCCATCTAGTGAATTGGAATTGGTCCCTTTGAATAGATGATTATGTAATAAGCTCTTAGAGAGCTCAACAAGATTTCCCCACCTTAAATCAATCACATTTGAAAATCGAGAGTCAAAAGTTTGTAATGTGTTAAATTGGATCGATACATGCGTTCTAACCAAAGGCTACTTTTGGGTTGTAAACTTATAAATGATAAAGGAGAGGGATGTGAATTCTCTATTTTTCTTCACTAGATGTTCTCTTCACTTGTTAGAATGAAAGGTATTAAACTCTTTGGCATATAACTGGCAGACCTCTTCACAAGAAATGGTGGGTCACTTCCTAGTAACAGTTTTTTTCCTTCTCATAACACATCCTTTCTTAGAAGATCCAATTTCATTTACAAGTCCAGTTTATTGGAGTAGAAAACTCTGGTAGTGTCCATAATTTCTTTATGTATGTATGTGGCAGTTAGTCGCTAATTATTCTAGAGCAGGAAAAGTTGAAATAGCAGGAAGTGAAATGCCCATGGACTGATATTAAATTTAGAAAATATATTCCCCTAGCTTTTTATAGTCCCTATGAGTGATGGTATTTTCACTTATAATTCTCACAACAAAAGGAGATACAGGGAAAGAAGATAGAGAAGTGTGAGACTTTGCGAATGATGTTATAAAGTGTTCTGAGAGTTTTAAGTGGGAATGGCATTAATGCTATTTTACTGGTTAGATGCATAACAAACAGAACAAATCTAATGCTTCATACTAGAATAAGCAAAGTTTAGTAAGTGACAGCATCTTTGGATGAAGCAACTGATGTTTGCTTTTACTGAAAAAGAAACGTAGATGGGTTTTAAAGGTGAAAACTGGGGATGCCCTTTCCTCCAACCACCCAAAAATTGGAGATGCATGCACAGATCTTCTTGTAGAATTTTCTTTTCCATCTATCAGAATTTTCTTTTCCATCTATCAGAATTTTCTTGTCTTCCTGTGGTAAGACAATGTGATATGTTCACTTAACCATTTTCTAATATGGCATTCAGATTTATCTTTCCTTTGGCAATATTATATTTATATAACTGGTTAACTGGGACATAAAAGAATAACTAATACTTCCTTGTTTGCACTTTGAGGAGGAAAGGGAATCAAGAATAAAGTTGATACTTTATGTATGAAGCTGAAATACTTGAATATATGCTTTGCATTTTATTTAAATTTTAAAGAAAAGGAATGGAATAGAGTAGACCAATGCCTCTCCAATCTCCATCCCCCTCACAAAAAGTTTATTTTTTACCCTTCAAATTGAAGAGGACAAGGTCATATCGAAACATGTACTGTATGTTCTTAGAAAAAGGGTATTTTTCATAACTTTCTCTATAATATCAATTTGAGGGGAAGGTATCCCTTAGTACTTTTAATTTCTGGAAACAGGTAACTTCATATTTTAACTCTCCTTAACTTTTCTCTTCTCCCTAAAATACTCTAAGACTTATCTCCTATTTTTTTAATATGAACTTCCAAATATCCATGTTTTATACTGCTTTCCCTTACTGGGTTTTAAACATCATTTATTCATTGTCTTCATATTCATAGTTGAGTAAAAAGCCTATTGGATTTTCTGGATTTCATTGAAATACCACAGTCCAATTCTTTTTTGTCTGGAATGACATTATCTGCAAATTGCATAATTATGCATGCATTTTGAACACTGTTGTTGTGTTTGATATGAAATCCCTATATTCTTAACAGCCTTATCTTGAAATCACTATTTCACTGTATCATAAACTTCAGGTGATCACAACCTTGACAATTGTATGACTCCAAAATATCTCTCTACACAACTGTGGCACCACATTTACAAATTTAAAATTTTCTAGGCTTCTCCATTTTGTTTTTGAGTACTTCTACGAAGTAACTTATCATTTATCTAACTCACTCTTATTATTCATTTTGAGTTTTCAGAAACCCAAAGCTTCAGATGGTTCCAAACTTGCTCCATGATCTCCACGTGATATACAAGTTGGACAGGAAGGAGGAAGACAAAGATACAACTCTAGGATCTACAGGGGAAGAATGTCAAGGGAACAGCAACAATTTCCAACCATCAGAAAAAGTCTTTCCCGTTCTTGATCAGGATCTCAATTATCTTCCTTACGAAGAAGATGAGTCTGAGTTACTAGACAATGAGACAGATGTTGAAAGTTCACCAGGTTCCGTCAACACTCTTGCAGTTTTTTCTGCAGCTTTGCTACTATATGGACATATTGAATCTTTAGATTCGCTTGGTGAAACCTAAGTGTTACAGTATCTTGAAGTTCAAGTGTTTACTATCATGACTATATTGTTGTCATAAGTTGTAACTTAAATCTACGGTTCTGAATTGCTAATAAAATATATGAATCCTCTCAGATGACTGCACTGATGGAGTTTATACCATGTTGCTCCCAATTTTGATGCCATTCCCTTTGTTCCAGCAGCTCATTATTTGTATGCACTTCATCTATTAAAAAGGAATTTTGGATACTATATATTTTAGTGCAGTACGTACTTTGCAAAGTGACATTTGCTTCACCTGTTTAAATGAAATCACTGAGCTTGACTAGGATTAGTTGGGCACCAAAAATAAAAAAAAAAGTTTCCTATGTGAAGCTTTCTAATGTTGAGTTAATAATGCGATGCATAATGATTTATATCTAACAGATGAGGAGTGAGTTTGCAGGTTTGCTAGGGAAAAAAAAGAGGGCACCCAGTGACCTGGTAGCAAAAATTTCCTTATCAGATTTGGTCCAGTACTTTGGTATGCCAATCGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAGTCACTTGATAGTCTCATTCATGATCTTCAGGTCCTTCCTTCTTGCTTCGCCTTTCTAATTTGATGAACTTTAACACTCTGTATTCTGATTGCTTACTCATTTCAAGAAATATTTTATTCATTTACAGCCCCTACTTGAACTTTATTTATTTGAACATCAGCGTAATTTCGTTGAAGTGCATGCAACCTACTTGTTCAACTAATCTTATTATTTGTAATATACCGAGGGAATTAGCTGTAGCCAACATGCGACCTTCCTTTTGAACTGATATTATTATAATGAGGGAGTGAGTGGAGATCGGTAGCCAACATGATTGATCTTATTTGATTCAATATCAGTTGATATCTTGTTTAAGGTTCAATCCACAATGTTAGTTTTCACATTTTGAAGACATGGAATGGGTGAAACTGAAAGCATGCTGAAGTGCACTTTGAAGCATTATTCTGCAAAATTTTGTTATAGTTTTGGTCAAATCTATCACATTCAATATATCGAGTTCATTTGAAATTAAGTATTATATGTATAGTCTTCGGTAGTAGGTGAACTTTGACATTAGCGCATAATTTTGTTGATTAGTTTTATGTTCCCATTTGATCTATAAATCTTTGCATTCTGTTTCGTCTACTTTTGTGCTTCCCTTTTGAGTAAAATACTTAAATTTTGCCAACGTTGTAATCTCGAGTTCTATTGAATTTTGAACTCCTCCAACACAGATAATAAAAAATGGTTTGTATTTAGGCAACATTGACTGATTGACAAAGGTGGAACACATGCAGGAAGAGGCAAAGAGCCAAGAATTGGAGGACATGGAAGCAGCAATGGCAGTGGCCAAGAGACAAAGGATGTTGGAGTGTGAAAAGGAAAACATAGAGAAGAAGCCCTTCATGGACATTCAAACCGAAACAAAGAGGTTCAGGCAAGATGTTTTCAAGAGAAGACACAGAGCAAGAGCTGTTGGAAAACATAATTCTACAGTATCCAACACATAGCACAATGTAAAGAATGAAAGACCAACATAAACCATAGTTCTCACGTTGTAGAATGAGATGAAAGTTGAAACCTCTACACCCCTTCTAACAGGGCATTTTGACCCTCAGAAATTTACTTTTGACTTATATATAGATTTCAATATGCAAAGGAAGTGCTCAATTCCCTTTTGTCTTTTTTTCCCCTCTTAATCATTGCTTCTACAGTTCTGATTGTATAATTATAAGATTTATTACTCTAACGTTGACCCGGAAAGGATTAAAATTTGATGAACGTGGATCATACTCAAGCAGTTTTGGAAAACAGGCAACTAGGAGTTGTTTTGGGTTGAAAGCACTTTGTTTAAGCCAATCTCATCGCTTCAGGTGTTAGGTGATGTATAAAGCAAAAAACTCATGAAAGGTTCCATTTGATTGAGTTGGGTCTAATACATGAATGATGATATTCTTAATTTCCACGAAGCTATGTCACAGGTACGTGCGCTTGCTTACATTGCATTGCAGCAAAAACTGATAGCCACTTTGATTGGTTAAATTCAAAGTTAAGGATAATGCTATGCGGGGTGTGTCGAATTTGATGTGTCTCTGTCCACTAACTTGATTTGTTTTTGGTTAGATGATTATGCAGCACTTTCCGCGACGATGACTTGGATCTACAAATAA