Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_35141 LG10 17957140 17959969 "PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic "
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 17957261 missense_variant p.Lys357Asn
T/C 17957416 missense_variant p.Thr306Ala
C/T 17957491 missense_variant p.Glu281Lys
T/C 17957526 upstream_gene_variant
A/T,C 17957545 upstream_gene_variant
T/C 17957573 upstream_gene_variant
G/A 17957594 synonymous_variant p.Ile274Ile
T/G 17957744 upstream_gene_variant
G/A 17957771 upstream_gene_variant
A/G 17957869 upstream_gene_variant
C/T 17957985 upstream_gene_variant
T/C 17958181 downstream_gene_variant
G/A 17958298 downstream_gene_variant
G/T 17958480 downstream_gene_variant
T/G 17958567 stop_lost p.Ter219Serext*?
A/G 17958730 downstream_gene_variant
A/T 17958736 downstream_gene_variant
T/C 17958742 downstream_gene_variant
A/T 17958743 downstream_gene_variant
G/T 17958882 missense_variant p.Ser153Tyr
A/G 17958885 missense_variant p.Val152Ala
A/G 17958921 downstream_gene_variant
C/T 17958993 downstream_gene_variant
G/A 17959002 downstream_gene_variant
G/C 17959100 downstream_gene_variant
A/G 17959177 downstream_gene_variant
A/G 17959182 downstream_gene_variant
C/G 17959253 downstream_gene_variant
A/T 17959260 downstream_gene_variant
T/A 17959285 downstream_gene_variant
T/C 17959297 downstream_gene_variant
T/G 17959339 downstream_gene_variant
T/A 17959511 stop_lost p.Ter112Tyrext*?
C/A 17959799 downstream_gene_variant
A/T 17959842 downstream_gene_variant
A/G 17959958 synonymous_variant p.Cys4Cys
C/T 17959959 missense_variant p.Cys4Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_35141.1
MGVCFSSPGAHRSPNSTSPQGSARGSRDLTVSLGSLEGKREVSEESGVVGSSSGWSNSNSDTNSNSIVFPSLEMRKLKEFSFAELKAATKGFKSDALLGEGGFGKVYKGWLHKKTLTPTKAGSGIMVAIKKLNPESMQGLQEWQSEITFLGTVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWRNTNTEPLSWDTRLKIAIGAARGLAYLHTSDKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSAGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMRALDQKRPSGQQNLVEWIKPYLSDKSKLKSDIMDEKIEGQYSTNAALKAAQLTLKCLQNDPKLRPSMQQVLQTLETIQAIKLRTRKRTKHFPTINNFH*


CDS Sequence:
>Vu_35141.1
ATGGGTGTCTGTTTTTCGTCCCCCGGTGCCCACCGTTCGCCCAACTCCACATCCCCTCAAGGTTCAGCGCGTGGGAGTAGGGACTTGACAGTATCCTTGGGGAGCCTGGAAGGAAAGCGTGAAGTTTCGGAGGAGTCTGGGGTTGTCGGAAGCAGCAGTGGTTGGAGTAACAGCAACAGTGACACCAACAGTAATAGCATTGTTTTTCCGAGTTTGGAAATGAGGAAGTTGAAGGAGTTTAGTTTCGCAGAGCTGAAAGCAGCTACAAAGGGTTTCAAGTCAGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATAAGAAAACTCTGACACCAACCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCCTCCAGGAGTGGCAGTCAGAAATCACGTTTTTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGACGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGAAATACTAACACAGAACCTTTGTCTTGGGACACTCGACTGAAAATAGCTATTGGTGCAGCTCGGGGTTTGGCTTACTTGCACACCTCAGATAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAACTAGGCCCTTCTGCGGGAGATTCACACGTGACAACGAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATCGCAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGGATGAGAGCACTTGATCAAAAGCGACCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTGTCTGATAAAAGTAAGTTGAAAAGTGATATTATGGACGAGAAGATTGAAGGTCAGTATTCAACAAATGCAGCACTCAAAGCAGCACAGCTTACTCTAAAATGCCTTCAAAATGACCCTAAACTACGTCCTTCTATGCAACAAGTTCTACAGACATTGGAAACCATCCAAGCTATCAAACTTAGAACGAGGAAAAGAACCAAACATTTCCCAACTATCAACAATTTCCATTAG


Promoter Sequence:
>Vu_35141::LG10:17959969-17961969(-)
ACGTTGACCCGGAAAGGATTAAAATTTGATGAACGTGGATCATACTCAAGCAGTTTTGGAAAACAGGCAACTAGGAGTTGTTTTGGGTTGAAAGCACTTTGTTTAAGCCAATCTCATCGCTTCAGGTGTTAGGTGATGTATAAAGCAAAAAACTCATGAAAGGTTCCATTTGATTGAGTTGGGTCTAATACATGAATGATGATATTCTTAATTTCCACGAAGCTATGTCACAGGTACGTGCGCTTGCTTACATTGCATTGCAGCAAAAACTGATAGCCACTTTGATTGGTTAAATTCAAAGTTAAGGATAATGCTATGCGGGGTGTGTCGAATTTGATGTGTCTCTGTCCACTAACTTGATTTGTTTTTGGTTAGATGATTATGCAGCACTTTCCGCGACGATGACTTGGATCTACAAATAAACAAATATAGTGAGACAAAACACGTTATTTGGAGTCCATGTTTTGTTCCGCGGAAGACCACATTCTAGTTAACTTCCTCCTTCGACGAAAAAAACCCCAATGATGTTAACCTTTTGCGTTGTTCGCTCTCTCAAGTTGTTGTGCTGCTTGTAGTGTGTGCGGTGCAGCTGTTTTTTTTTTCTTTTTTCTTTTTAGAATCAAGTAAAATTTCCATATATCAAACAAAAGTTCCAATTATATATATATATATATATATATATATATATATATATATAATTTTGATGAACTCAAGCAATTAGGAAAATAGTCGAGCCAAACAAGATATATGAATTCAATAATATTAGCATTTTCATTCTAACAATTAGAAATTAATAATAATATTAAAAATTATTTTATATTAATTCAAAAATAGGTTTCTTTGTAAAATCATTAAATAAAGTTTATTATTTATTAATTTAAATCAACAATATTTGGATGTTTTTTTAATATAATATGATACATTTAGATAATTAGGAGTCACAGGAAATAATTCAAAAGGTCTTCTAAACAAGATAATAAATAGGACATAACTCAATGGGTGTTTTTTTTAACCCTTAGTTAAATTATTAGATATAAATTAAGAATGCCACTGCTTGATTTGTCGTAATATATACATTCAATTCCCCAAATGAATTTCGTCCCCTCAAGAAGGAGAACAAATGTTTATGGAATATTATAACTAATTAAGAACAGCAAAAGTGAGAATGATGCTATAAATATCTTAGAAATTTGTGGTTGTGTTGTTTTGTGGTCCCAAGGAAATAAGATAAGCTCCATGATTATATGTTCTTGATTTTGATTAAAACATACATGCAAGTTGAGGTTTCTGAAAATAAGACTACAAATCGAATTCAGACACTTGTCAAATTTTCTGTGTACAGAATGTGATTTAAAAGGATGATTAAATATTTTTATTATTTAACATATCAAAAGACTTTTCTCTTTATACATCAAATATTTTAATTTATATATCATTTTTACTTCTACTTTTTTTAGTGAAATAAGTTTCATAAAATTTTCCATAATTTATTGAACACATACTATCATCCTCACAAATGAAACTATAATAATTAATATCATTAAATTACAAGCTTATCCCATTTTAAAAATATGTAACATCGTATAATATATAAGACTTATAGCATAAAATATGAATTATATATATATATATATATTCATAAATAAAGAAATAAAAACATTACATTTAATCTGTCAAAAAAGAACTAACAAATCACGGTAATAACGAAATAATACACAAAATTAGATTAAAGTATTAAATAATGAGTAAAATGAAGGTCTTGCGTTGCGTGTACTATTGTATTGGGTCAGCTAAATGCTTCCGAAAACGCAGACTTTGCATAGTGTGTGTAAAAGGTTGAGTTAACGCGTGCTCAACACGGAAAACTCGAATATAAATTTGTCAACTCACCAGTATCTTCAATGTCAAAGTTACGTGACTGTTGCGGCTGCTACTTCTTCTTCTTCTCTCTTATAATCTTCTAATCCTCAACATTATTCTTCCTTTCTAATTCAATAAAC


Gene Sequence:
>Vu_35141(-)
ATGGGTGTCTGTTTTTCGTCCCCCGGTGCCCACCGTTCGCCCAACTCCACATCCCCTCAAGGTTTTCATTTTTTTTCTCATTACACAGAACACTGTCTATAGTATAGTTTATAAATACTCTTTATTTTTTGTATATATACACCAAAACCGAAACGAAAAGCACGATTTTTGACATGATTCAGGTTCAGCGCGTGGGAGTAGGGACTTGACAGTATCCTTGGGGAGCCTGGAAGGAAAGCGTGAAGTTTCGGAGGAGTCTGGGGTTGTCGGAAGCAGCAGTGGTTGGAGTAACAGCAACAGTGACACCAACAGTAATAGCATTGTTTTTCCGAGTTTGGAAATGAGGAAGTTGAAGGAGTTTAGTTTCGCAGAGCTGAAAGCAGCTACAAAGGGTTTCAAGTCAGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATAAGAAAACTCTGACACCAACCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCCTCCAGGAGTGGCAGGTTGGTTTCTTTTCCACTCTCTTCCACCTTTTCCATTGCTTTTTCATTTGTTAAATATATCTTCCACAGAGTTTGGCATGATTTCACTTAAACAGAAACCTCAGTAAATTATCTGCAACATTAGTTTTTACAAACTGGTTTAAATGCTCTTATATATTTATAAGATTATATGAAAACTAGGTCTTGGTCTTAGGCGTGAATAAAGGGCTCAAAAAGTCCTCACTCTCATTGTTTTCTGATAGCGATACCATACCCAAAAGCAACCCTTCACAGTTAACGAAACTACCCTATACACTTCTCTTTCAAGGTTGAAATTCATAATAACTTTTATCCATATTCACGTACTTTCTTTAACCAAAAACTAATTTTGTAAATTATAACATTTTTTCTATCTTATTTTCTATTATTATAAATCAAGTAAACGAGAAGAATCTAAGCACTAGTTCTTGTAAGATTCCAATATCTGACATTGCAGCATCTTGGTCTGGTTATATATGATAATGCAGTCAGAAATCACGTTTTTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGACGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGTATGAACTTTAGACGATTGAAATATGTTAATATTAAATCAAATTTGTTTGCCATGGATTTTGTTTGAGTTTTTAGCTCATTTTCTTTGTTTTTTTTTTCTTTTTCCAAAAATAGGAAATACTAACACAGAACCTTTGTCTTGGGACACTCGACTGAAAATAGCTATTGGTGCAGCTCGGGGTTTGGCTTACTTGCACACCTCAGATAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGTTTGTTTTTCCAATCTTTTGTCTTGTTCCACACTTCTCCTTATCATGAGAAATTAAAAGCAAATTATATATATACAGTGTGTTTTTTTCTTTCTCATTTAAGATCCAGGTTTAAGATAATCACGTTAAACATAATGTAAAAGTAACTGTTAATCGCGTTATGCTCCTAAACTTTACTGCCTTTTTTGGGATAGATGACAACTTTATGAATTTCTATACATATTATATTAAAAGAAAATATCATGTGATACGATGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTACCGGACGAACACGATGTTTTTCTTAAAGTGACAAAATTTCTGATATTGTGGGCTATTGTTTAATACTGACAAATATTTCAAGTGCATGTACCTCATAACAATCACCATCATCTTTCCTTATATATTATTCATTCATTTAACTTTCTTCCTATGTTTCCTTTTATGAACTTGGATACAGTTCTTTAAACCCTTTAAAGCAACTTTTTGCTGCGTGCATAGGAAAACTCTATCTCTAATGAAAAACACAAACATTTAAAAGTTAAATCTATGTTTTATATTCTTTATAATTTATATTATTATTAATTCTACACAAAATTAAGGAATGTATCGACAAAATTATATTATGTTCTACTTTTGACTTGGAATCTTCTCCTATGTATATATACATATCCTTGTGAAAAAGATGGTCTAAACAAAGCGTAGCGTATCTCACTCATTGTTTATTGATAGATAAAATATTAAAGTATAAGTTTTGTGGTTGCAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAACTAGGCCCTTCTGCGGGAGATTCACACGTGACAACGAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATCGCAACAGGTGATTATTGAAAAATAAGAAGCAGTTAATTTGATGTTACTTTGATTATATATATATGAAAGGTGTTTGTTTGGTTAAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGGATGAGAGCACTTGATCAAAAGCGACCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTGTCTGATAAAAGTAAGTTGAAAAGTGATATTATGGACGAGAAGATTGAAGGTCAGTATTCAACAAATGCAGCACTCAAAGCAGCACAGCTTACTCTAAAATGCCTTCAAAATGACCCTAAACTACGTCCTTCTATGCAACAAGTTCTACAGACATTGGAAACCATCCAAGCTATCAAACTTAGAACGAGGAAAAGAACCAAACATTTCCCAACTATCAACAATTTCCATTAG