Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34880 LG10 15480816 15482615 PREDICTED: homeobox-leucine zipper protein ATHB-40
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 15481416 intron_variant
A/G 15481431 intron_variant
G/A 15481572 intron_variant
G/C 15481836 intron_variant
A/T 15481866 intron_variant
G/A 15481903 intron_variant
A/T 15481926 intron_variant
T/C 15481954 intron_variant
G/A 15482013 intron_variant
C/A 15482021 intron_variant
G/A 15482025 intron_variant
A/G 15482291 intron_variant
C/G 15482326 intron_variant
C/T 15482402 synonymous_variant p.Ile151Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34880.1
MNHRPFQDNMMFIPQLYPADAPYTQIIAQQGESKKPKRRRGKKNKGGENGASEANRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKSHEANLLEKCRLETEVLKLKDQLSEAEKEIQRLLESGDRVPSNSSSSSQSQSQSQSQSQSMEAVDPAFFGVFGVDGYDDDVFYGPETHCMNALEWINLYM*


CDS Sequence:
>Vu_34880.1
ATGAATCATCGACCTTTCCAAGACAACATGATGTTCATCCCTCAGTTATACCCCGCCGATGCACCATACACTCAAATAATTGCTCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTGGTAAGAAGAACAAAGGAGGAGAGAACGGTGCCTCCGAAGCCAACAGGAAGAGGAAGCTCAGTGCCGAGCAAGTTAATCTACTTGAGCAGAACTTTGGAAATGAACATAAACTTGAGTCTGAGAGGAAAGACAGGCTCGCATTGGAGCTTGGTCTGGACCCTCGACAAGTTGCAGTGTGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAACTAGAAGAAGAGTACTCACACCTTAAAAAATCCCACGAAGCCAACTTGCTCGAGAAATGTCGATTGGAGACCGAGGTATTGAAGCTGAAAGATCAACTTTCTGAGGCGGAGAAGGAGATCCAGAGGCTGTTGGAGAGTGGTGATAGAGTTCCGAGTAACAGCTCTAGCTCGTCACAGTCACAGTCACAGTCACAATCACAATCACAATCTATGGAAGCGGTGGACCCAGCATTCTTCGGGGTGTTCGGAGTTGATGGGTATGATGATGATGTGTTTTACGGGCCCGAGACTCACTGCATGAACGCCTTGGAATGGATTAATCTGTATATGTAA


Promoter Sequence:
>Vu_34880::LG10:15478816-15480816(+)
AATATCTGCATACAAACATATTCTCCTCATCCTAATTCCCTTTTCAGGTTTAATTGAATTATTAAATATTCTCATAAATTTCATTATAAATATATAAAGAAAATCATTTATTTCTAATTATTTTCCCTCACCGGTCATGAAGCAAGGCAAAAACATCATCCACTTTTGAAAAAAATACAAAAATAGACAGATTTGCGAAAATATAAATAATATCAATGTGGTACGACTTCGTTGTATCCCATTACTTTAAAATATTTGTATAAAAATTACTTCATTCTAATATAAATTTATTATAATAAAGTGGTATTAAGGTGATATGATTTATCCTGTAATTTGTTTCAAATGTATAATTTTTGAAAAGAATTGTATGATAAAGGTGTTTTTGGTTAGATTGAAGAAGAAATTGGGAGAAGGAATGAGTACGTAGACAATGACGCAAGTAAATGAAGGTTAGAGGGAGGGGGAGACAGAGTGAGAAGAAGTAGTTTAATTGGTAGTGATAATGGTGAGTGATCTCGAGCCACGCATGGGCTTAAGAAGAAATTTAGAGAGAGGTTAATTAGTATTAGGGGACAACAAAAATAGCTTAAATGTCCAAATCCAGAGGCTAACTTCTCTTAATTGTTTATTAAGCTCCAGGTGCTCAACTTTGGGATCACAACCCATCACTCTTTCTTTATTCCAAAAGGGTTGTTAGGTTGGTTGGTGCCCATCTCCTTCTCTTCTTTTTCACACACACACCATTATCATTTTTTTGACCTTCTCTTCTTTGTAAATCTCTTATTCTGGAAAGTCCAAACAACTTCCCTTTATACACAAACACAAGCTTTACAAAACCATTCTACCTTTTTGCATACACTCCACAATCCCTTTATCCACCTAATTAATTATCTTCCTTCCTTCCTTAACCCTCACTTTCCATTTCTTAATAATTTCTTTTTAACATTTAATCTTTTACACTTCTTTTCCTTACTTCTACTCACAATTTTCAAACCACAATCATACTTTAACACAAACAACCTTTTACAACTATTTCATATTTCCTTTCACTCTCTCTTTCTATTTTTTTTTCTTTACAAATACAAACAATTAGTTTTATTAAGATCATTTTACTCTATAGGAGTGGATTGATAAATGATAGTTACTGTTTTCAAAGAATAATTTTCCATATATTTTACAGGGTGAAGAAATACATCCACGATATTTCGTAAAAAATATTTCCAAATTTAAATGAACTTCTTTTGAAAAAAAGAATGTTACATAATTATGTAAAAACACATTAATGGATCAGTTTATATTTCTATACAAACTAAGCTTTTAAATTCAACTTCATAGATGAATTACTCAAATAAAGGAGGAAAGTGTAGCTTTTTTAAACGGTGCAAGTAAATGTGGCGTACAAATAAAATGTTGTGTATTCGTATTATTAGGTGTGAAGTTGTCATTGGTGTGTCTATAAGTATATAATAAAAACTTTAAAATATTTTTTTATTAAAAAAATATTTACTACAGCATAAGAGTATAAAGTTATTTAACATTTAAATTCGTAGACCAAATTAATATATATAATTTAAAACTTTTCGTACGAAATATTCGTAAATACACAATGAAAACCACTTATTATATGCGTCGTACGTATAATTTCCCTATGGTCTATTGTGATGCGTCCGTGCGTATTTTATTTCCTGGTGTGGCTTGAGTCGTGACAAGTATTAAATAATAAACTGTAAAAACAGAATGGCAGTGATTGCGAATATGTGCAGAAGTTGGGGCATTTTGGTAGAATGCATTATTCAACATCCTTGAACACAAACTAAGTGGACAGGCATCATCTAGCTATAAATATGCGAAAGGGCTATGTTGTCTCTCTAAAAACAATATCCTCTTTTTAAGGAGAAGAAAATAACATCACACACGCACAGACACTGGTTTTGAGATCAAAACCAGTGGAGAGCGATCGAGCTAGTTTGCTAGGAACAACATAACACACCGTACCACAA


Gene Sequence:
>Vu_34880(+)
ATGAATCATCGACCTTTCCAAGACAACATGATGTTCATCCCTCAGTTATACCCCGCCGATGCACCATACACTCAAATAATTGCTCAACAAGGTTACAATCCATGCCCAAACGTTGTTCTCAGTTACTTCATAGACCTTACTTTTAACTTTTGGTGTCTGTCATTGTTTTTCAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTGGTAAGAAGAACAAAGGAGGAGAGAACGGTGCCTCCGAAGCCAACAGGAAGAGGAAGCTCAGTGCCGAGCAAGTTAATCTACTTGAGCAGAACTTTGGAAATGAACATAAACTTGAGTCTGAGAGGAAAGACAGGCTCGCATTGGAGCTTGGTCTGGACCCTCGACAAGTTGCAGTGTGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAACTAGAAGAAGAGTACTCACACCTTAAAAAATCCCACGAAGCCAACTTGCTCGAGAAATGTCGATTGGAGACCGAGGTATACCTCTTTTTTTTTTCCTATCTCTCTTATTTAATACTAAACTAAAATTCAATATCTTTCAGTAACTTCAGGCTAGAGTTTGGTTTTCCTAGAAATTTATTCTGAGCGCAGGTATATTTAAAAGAAGAAATCGTACACAATTAACAAGAGAGGGCCATTTCATTGGCCCATATTCGTTCTTGTGCTTAGGAAACTTTTTCGGAAAAAAAAAAACTGTACTGAGAGTATGACTTTATGACCTAATATTGTGGAAACTGAAAGCAGAAGTGGAGGTAGTACGCTGCCTAGAGAGTCTGAAATTGAAATTTCTTTGTTTTCCACCAATCGATACTTTGTACAGAAGCACCGCACAGTTTACACTCAACCAACCGATAGTGTGTCATTTTCTTTTCTGAAAACAGAAACGTCAATTTCGGGTTACATGTCACCACGTTACATCTGTGTTGGCCTAGAAATTTTTTATTCCCATATTCCTTCTTTAACTCTGTAAGTCGTCTCTTTATTTATTTGTTTAGGAATTTTGTGGGAGTAGTTTAATTTATCGAAAATGTTGAAAGAGATGTAGAAGTCTTCGCATGCAAGCGGTTCTTCGGGGCAAAGTAAGGGTAAGAAAAAACAAAAGAGAAAACAAAGAAAAGAAAGTAGAGGAAAGCGGAAACTAAGACCCACCATATGAACGTGCGCATATGAGCTCTGGGCTCGAAGAAACCTAAGTCACACTTGAGTTCTCGGCCATAGATAAGTCATGTGAAAAAAATAAATAAAAATCCAATAATAAAAACAAAAGAGGAAAAGCCACTAACAAAAGGAACAGCAAACTGCCACCTTAGTAGACAACAAAGGGCACTGTTTCTTCCATTTGTTCGATAAGCTCCGTACAGTATTATTAGGATAACTGGTGTTGGGCTCCGATGGAGGCCCACTTTCGAAGAAGACACGTACCATGTGTTCCCACGTGAAATGGCATTAGCCTGAGATGAATACCTCTCATTTGTCTATATGTAGATATATTCCCCTAACAGAGTATGAAATCTGTGTGGTTTCAGGTATTGAAGCTGAAAGATCAACTTTCTGAGGCGGAGAAGGAGATCCAGAGGCTGTTGGAGAGTGGTGATAGAGTTCCGAGTAACAGCTCTAGCTCGTCACAGTCACAGTCACAGTCACAATCACAATCACAATCTATGGAAGCGGTGGACCCAGCATTCTTCGGGGTGTTCGGAGTTGATGGGTATGATGATGATGTGTTTTACGGGCCCGAGACTCACTGCATGAACGCCTTGGAATGGATTAATCTGTATATGTAA