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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34761 LG10 14227630 14230954 PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/C 14227648 5_prime_UTR_variant
G/A 14227689 5_prime_UTR_variant
T/A 14228650 intron_variant
T/G 14228651 intron_variant
A/C 14228895 intron_variant
T/A 14230009 intron_variant
C/A 14230335 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34761.1
MWDLNDSPDQRKDYESEGCSSLDDDKGRRVGYVSNSSSSAVVLDDGLEEEDSDRGGSRTLERKSSKIFGFSVTHNDSDHPPVTQQFFSVEDSDLPVSEAAPTDCGGSSFPRAHWVGVKFRQSETLGPGKSVKMSEPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSDSSGVAADHNLDLSLGNLSSRRGNGQISGNHFPNSASDQHLPSASNWQNGGTKPKLVNILPKPCDRSNMETYARDWLGESETLRLLNQTHLQSPTTKEMHRYGPYRSPAEPQLSHSFAILHPPNFHVPSSSSNGGRIGSDLSLSMSDQQQWQAGHPHLLATAAASSGFPPQIRPSLSW*

>Vu_34761.2
MWDLNDSPDQRKDYESEGCSSLDDDKGRRVGYVSNSSSSAVVLDDGLEEEDSDRGGSRTLERKSSKIFGFSVTHNDSDHPPVTQQFFSVEDSDLPVSEAAPTDCGGSSFPRAHWVGVKFRQSETLGPGKSVKMSEPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAAIKFRGVEADINFNIEDYEEDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSDSSGVAADHNLDLSLGNLSSRRGNGQISGNHFPNSASDQHLPSASNWQNGGTKPKLVNILPKPCDRSNMETYARDWLGESETLRLLNQTHLQSPTTKEMHRYGPYRSPAEPQLSHSFAILHPPNFHVPSSSSNGGRIGSDLSLSMSDQQQWQAGHPHLLATAAASSGFPPQIRPSLSW*


CDS Sequence:
>Vu_34761.1
ATGTGGGATCTGAATGACTCTCCCGATCAGAGGAAGGACTATGAATCTGAAGGTTGCTCTTCGTTGGATGATGACAAAGGCAGGAGAGTGGGATATGTTTCAAATTCAAGCTCCTCTGCTGTGGTCCTCGACGATGGATTGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACATTGGAGAGAAAAAGTAGTAAAATATTCGGCTTTTCAGTTACACACAATGACAGTGACCACCCGCCCGTCACCCAGCAGTTTTTTTCGGTGGAGGATTCTGACCTTCCTGTCTCTGAAGCAGCCCCCACCGACTGCGGGGGAAGCTCCTTCCCTCGAGCTCACTGGGTAGGTGTAAAATTCCGTCAATCGGAAACTCTTGGCCCCGGAAAATCAGTGAAAATGTCGGAGCCTATAAAGAAAAGTCGGCGAGGACCACGGTCACGAAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACTGGTAGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCAGATATCAATTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGAACAATTTAACGAAAGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCGGCAATTAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCTGATTCCTCAGGTGTAGCTGCTGATCACAATCTTGATTTGAGTTTGGGCAATTTGAGCTCTAGACGTGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGCGTCCGATCAGCACCTGCCATCTGCATCTAATTGGCAGAATGGAGGAACAAAGCCTAAGCTTGTAAATATACTACCAAAACCATGTGATAGGAGCAACATGGAAACCTATGCAAGAGATTGGCTTGGGGAGAGTGAAACCTTGAGACTGCTAAACCAAACTCACCTTCAATCTCCAACGACTAAAGAAATGCATAGATATGGTCCGTATAGATCACCAGCCGAGCCTCAACTGTCTCACAGTTTTGCAATTCTTCACCCACCAAATTTTCATGTTCCCAGCAGCAGCAGCAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATCAACAGCAATGGCAAGCCGGGCATCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGACCCTCCCTAAGTTGGTAG

>Vu_34761.2
ATGTGGGATCTGAATGACTCTCCCGATCAGAGGAAGGACTATGAATCTGAAGGTTGCTCTTCGTTGGATGATGACAAAGGCAGGAGAGTGGGATATGTTTCAAATTCAAGCTCCTCTGCTGTGGTCCTCGACGATGGATTGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACATTGGAGAGAAAAAGTAGTAAAATATTCGGCTTTTCAGTTACACACAATGACAGTGACCACCCGCCCGTCACCCAGCAGTTTTTTTCGGTGGAGGATTCTGACCTTCCTGTCTCTGAAGCAGCCCCCACCGACTGCGGGGGAAGCTCCTTCCCTCGAGCTCACTGGGTAGGTGTAAAATTCCGTCAATCGGAAACTCTTGGCCCCGGAAAATCAGTGAAAATGTCGGAGCCTATAAAGAAAAGTCGGCGAGGACCACGGTCACGAAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACTGGTAGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCAGATATCAATTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGAACAATTTAACGAAAGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCGGCAATTAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCTGATTCCTCAGGTGTAGCTGCTGATCACAATCTTGATTTGAGTTTGGGCAATTTGAGCTCTAGACGTGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGCGTCCGATCAGCACCTGCCATCTGCATCTAATTGGCAGAATGGAGGAACAAAGCCTAAGCTTGTAAATATACTACCAAAACCATGTGATAGGAGCAACATGGAAACCTATGCAAGAGATTGGCTTGGGGAGAGTGAAACCTTGAGACTGCTAAACCAAACTCACCTTCAATCTCCAACGACTAAAGAAATGCATAGATATGGTCCGTATAGATCACCAGCCGAGCCTCAACTGTCTCACAGTTTTGCAATTCTTCACCCACCAAATTTTCATGTTCCCAGCAGCAGCAGCAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATCAACAGCAATGGCAAGCCGGGCATCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGACCCTCCCTAAGTTGGTAG


Promoter Sequence:
>Vu_34761::LG10:14225630-14227630(+)
CTTTAATGATAAGTTAATGTAATTGATTTGATTTTCTTTTAAAAACAGTCATCTATTAAATTAATTATGTATTATTTTAGTATCTATAACATCCCAAAAATACAGTATAAACTATATAATAGAATAATTACATTTAATAATAGTCAAGATCAGTCTTTCACTAAGATAACGAACGTTCACAGATGTGGGCTAGGGTTCTCCTTCTGACATAAGCCTTAACGTTCTACAACACGTTCTACGAACTATAACCCACATAAAATCAGACAGATACTCAGAATGATAGGATCAACTCATGCAACCATGAATCTGGGTTTGCATGTTATAGAAAAGACACGAATGGAGGAAGGATGAACTTACCAGTTCAGAATCTTAAACTGTTAGGTTCAAATGATCGTCCTCTACGCCGGAAGTGTAGAACTGGTGCCTGAAGTGTGATCGGAGAAGAAAAGAGTGAGTTTTGGTAGAGAGAAGGGAGAGATGTTTAGAGAGAAGGAGGAGAAATGAAGATCAGAGGTTTTTGGAGAAGAAGGGTGCATGCAGAGAGAGAGACTGACGCGGATTTCATAAAAATCAATTTTGTTTAAAACGAACGTCCGCTCTCCTGGTGACACCTGCATTCCAGTATCTGATTTTCGGATCCTCGTTTATTGACACCTGACGTCCGTGTAGAGGGTTTTGGGTGCGTTTTAAATGACTCTGACAGAAGGAGTTTTGGATGCGTTTTTTCGAGGTCTGACAGTATCTGGTGTATATTTCGATGCAGTATAAATAAAAGTATTTATTTCACATGATAATCATGAAATTCAACTATTTAAATCATTATATTTTTATAACTCAGTCTACTATTACCCTCCCAAAAATAACTTCTAAGTTGAATTTTACATCTTGAACAAAATTAAACTGAATTATTAATATTTTGTTAACTACTTTTTTAATACTTTTTTTTTAAACATGACCAATATAGACTTAGAGGCTCATGAAAGTAGACCTTATTGTGAAGCAATACTTAATATAGCTCTTAAATTAGATAAGGACAGATAGACATTAAATAAAAACCACTGGTGTGTATACTTAGATTAGGCCAAGATAATGTGATTAAGAATGAGTTAATTTCTACCTGGCTTAACACGATTTGTCAAATTTTGCAAGTGTGTTTCAAGACAAACATACTACCTGCAGTATAAACAATACAGTGGCACAAATCCTATTTTTCTTTTTTATGATAAAAATAATTATCATCATATTCAGTAACTTAACCTAATTTTATGATATCTGTAGATGGAAAAGAAATAAAAGAATATATATTAGTGAAGGTTGAGAAAAGACGCGAAGGAAGAGGCGCGTAAAGAAGAAAATGGTGATGAGCTTTGTAAGGGTATTGGACCCTTGGTGAACCAAAGAGGCAAAGGTGGCCCTCTTCCCGTATTCTTGGATCGGACTTTTCTGGAAACACTTTCTTCTTACTTCTATTATTCTCATTTCACTATTTCACTTTTCTTATGCCAAACTCTCTCTCTTTTGTTCTGCTCACATACATGACCATAATATTCTACCTTCTTTCCCAAAACACCCTCCCTCAAACCTCTATTTACTTTCCTCTTTTGATCCTCTGTGTCTTCCCACATGCTAAAACTTAGTCATAATCCTAAAAAGATAAAAAATGCGGAGCCATGGACCTTCCCCTCCTAACCTCATCATTAACAATTGCAACCTAACAAAACCTATTTCTCAGTAATTATCTCTCTTTTCCACTCCTTCAGCTGTCTATTTCCATTACTGCCTATGTAATTTCCACCACACACATAGATTCCTTTTCGATTTTGTTAACGTGGGAAAGTAAGTTTTTAATAAAAGAGATTTTTTTTGGTTTTCACGACTTGCATTTCATTAATCCCGTCAAAGGGGAAATAGACAACAGTACACTGGTTTTTTTTTATGAAAAAAAAAAAATAGATTGTGGTTTTTAGTAATATAAAAGAGAGAGAGAGAGAGGAGAGGAG


Gene Sequence:
>Vu_34761(+)
GAGTGTGGAAAGCTTTCGGCTAAGCTTGCTTGAAACTGGCCTCGTCTATGCTGTATTGGGCAGTTCGGGGAATACAAAGATCTTTGAAGGCCACCTTCTTTATTGCCTTTTTCCAACACCTACCTCTTTCTCTCTCACACTCGTCTTAGGTTTGATTTTTCTTCCTTCTCCCATACCCTTATTCCTTATCTCCATTATTTTATTCTCTACACGAAACCAACACCAAAACACACTCTGGGTTGGTTGGTTACTGTCTTTTTTTTTAACCTTTTCTTTTTTCTCTGCCTAGCTATATGTCTGCCTAAGAAGAGCAACACAGACGCCATTCAAAGGAGACTTCAAGAATGTGGGATCTGAATGACTCTCCCGATCAGAGGAAGGACTATGAATCTGAAGGTTGCTCTTCGTTGGATGATGACAAAGGCAGGAGAGTGGGATATGTTTCAAATTCAAGCTCCTCTGCTGTGGTCCTCGACGATGGATTGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACATTGGAGAGAAAAAGTAGTAAAATATTCGGCTTTTCAGTTACACACAATGACAGTGACCACCCGCCCGTCACCCAGCAGTTTTTTTCGGTGGAGGATTCTGACCTTCCTGTCTCTGAAGCAGCCCCCACCGACTGCGGGGGAAGCTCCTTCCCTCGAGCTCACTGGGTAGGTGTAAAATTCCGTCAATCGGAAACTCTTGGCCCCGGAAAATCAGTGAAAATGTCGGAGCCTATAAAGAAAAGTCGGCGAGGACCACGGTCACGAAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACTGGTAGATGGGAGTCTCATATATGGTTGGTGCTGCGTGAATTTATTCAAAGAATTTCTAACAATTTCTCAACTGTGTGATATTGATTCCTTTGATTGTGGTTGTCCTTGATGGTGCAGGGATTGTGGAAAGCAAGTGTATTTGGGTGAGTATAGCCTCTGTGGTAGTTTTTGATGTACAATTTGTGCATATTTGATTTTTTTTTCTTAATAATGTTTTGTCGTGGATCCGAATTGGGAGGCAGACAAGAGTGTATTGTGGGGGAAATTTTAAGGGATGACTGACGAGATAGTTTTGTCTGGGTAAAATTGTGTAGGTGGATTTGACACAGCACATGCAGCTGCTCGGTGAGCACTTGCTCCTTCTCTACCTATTGTTTACCCAGCTTTTAACATAACCTTTCTATACCTGGAACTCAATCCATGTAAAATTCCGTTTCTTAAAAATTCATACAAGGTTGAAATTAAAAAAGAAGCTTTTATTTATGTATTTGTTCCAGTGCTTATGATAGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCAGATATCAATTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGGTGGGTCGTGGAAGAGATTCTGTGGAAAGTTATTTATCTTATCTCGATCAGTCGCGGGATTCCTTATCTCCTACACCTCTTATAGTACTATTTTGTCTGTCTTGGTTTGTTATGGTGAGTTGGCTAATTAATGTTATGTAATGATAGATGAACAATTTAACGAAAGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGAAAAAAGTAGGACCTTATCTTGTATTATATTGTATAATTCTATAATATATTATTTTGTACATCATGTCATTCTTGTGTATGGCTTATTCATGCCGTGACAAAATTTGATTTGATTCGCCAGGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGTACCTATTTTGTTTACATGTCAATTTGATGTTTCTCCCTCCCAATTCCATGATTGCCCCACCTTGTAGAAAGTTGCCAAGTACATCGACGCATGCTAGGGTTTTGAATTTGTTTTGCACATTTTGTAAATAGGGCATATGACAAAGCGGCAATTAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCTGGTAATCGAGGAATGAACTGCGGGTTTATGTAACTCACTAATGTTTCTGCTCGAAGTTTATGTATTTTATTATTCGCATCTACAATTCTCTTTAGTTAAATGGAATATTGGGTGGCAGATTCCTCAGGTGTAGCTGCTGATCACAATCTTGATTTGAGTTTGGGCAATTTGAGCTCTAGACGTGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGCGTCCGATCAGCACCTGCCATCTGCATCTAATTGGCAGAATGGAGGAACAAAGCCTAAGGTTCGTGTAATATTTCATAAAATTCGTTCTTTACTGGTTGGTTCAATCTTAATTAGATTAATTTTCCTTTGAGTTGTAGATTAATCACCCCTTTTGTCTCTTCGTTGTATTTGATTCAGCTTGTAAATATACTACCAAAACCATGTGATAGGAGCAACATGGAAACCTATGCAAGAGATTGGCTTGGGGAGAGTGAAACCTTGAGACTGCTAAACCAAACTCACCTTCAATCTCCAACGACTAAAGAAATGCATAGATATGGTCCGTATAGATCACCAGCCGAGCCTCAACTGTCTCACAGTTTTGCAATTCTTCACCCACCAAATTTTCATGTGGGTGCCCCTTCATTAATTAATATCCTGGTTTTGGCTCATGCGTTCAATTTTAATGACAGAAGATGGTATTGGGTAAGCGCCTATTTATTATAACATCCAACTGAGTTTAATTTCTTTCCCCGGAACATGCAGGTTCCCAGCAGCAGCAGCAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATCAACAGCAATGGCAAGCCGGGCATCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTAGACCCTCCCTAAGTTGGTAGCAGAAAAATGGGTTCCACTTCCTCGAATGACCCTTCGAGATTATTTTTATACCCTGCCATTTTACATTGAAAAACAATCTCCCGTTGTTTTGTTTTCTGAGCATGTACAAGTGGATCCAGTTTAGATTATTGTTCATGTCATGTCCAACATCCCCTCCTTTAGGAAGCCCATACATAACTGTAACTTTACTATTGGGGGGAAAGAAGGGATGAAAAAAAAGGGGAAAGCCTAATTGTGAACTCGTTGGTTTTTGTACAATAGGTCAGTCAAGCTAACCAGCAGACGAAATCTTGAATTAGATATTCTGGGCGCTGACTAAAATTTTCTGATCTT

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