People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34759 LG10 14208705 14209709 PREDICTED: ethylene-responsive transcription factor ERF011-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 14208705 5_prime_UTR_variant
G/A 14208731 5_prime_UTR_variant
G/A 14208737 5_prime_UTR_variant
A/G 14208763 5_prime_UTR_variant
A/G,* 14208792 missense_variant p.Thr2Ala
T/A 14208883 missense_variant p.Leu32His
G/A 14208894 missense_variant p.Asp36Asn
A/G 14208969 missense_variant p.Thr61Ala
A/T 14208988 missense_variant p.Glu67Val
G/T 14209069 missense_variant p.Gly94Val
T/C 14209145 synonymous_variant p.Ala119Ala
C/T 14209148 synonymous_variant p.Ala120Ala
T/C 14209223 synonymous_variant p.Val145Val
A/G 14209346 synonymous_variant p.Ala186Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34759.1
MTSLVLRPLSLITLSSRILLRFSFLMDQIPSLSLSDLISTTPTQEHKATQEKREMEPQGRTQGGEREPTRKRSGVAVAVEGERKYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLVGEGAALVAGCDMSAASIRKKAIEVGARVDALQASLHHHHVAPPLPELLSRGDGGGSGDFAVDLNKMPEPESEDCKWDVN*


CDS Sequence:
>Vu_34759.1
ATGACAAGCTTGGTGCTTCGACCTCTCTCCCTTATAACCCTTTCGTCTCGCATACTCCTTAGATTTTCATTCCTCATGGACCAGATTCCCTCTCTCTCTCTCTCTGATCTCATTTCAACCACACCAACCCAAGAACACAAAGCAACACAAGAGAAGAGAGAGATGGAACCTCAAGGAAGAACACAAGGAGGAGAGAGAGAACCCACAAGGAAGCGAAGCGGCGTGGCGGTGGCGGTGGAGGGAGAGAGAAAATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCGGAAATTAGGGAACCCAACAAGCGTTCCAGGATTTGGCTCGGTTCCTATTCCACCCCTGTCGCTGCCGCACGTGCTTACGACACAGCCGTATTTTACCTCAGGGGACCCTCCGCGCGGCTCAACTTCCCCGACCTTCTTGTTGGAGAGGGCGCCGCCCTTGTAGCCGGTTGCGACATGTCAGCTGCCTCTATTAGGAAGAAGGCCATCGAGGTCGGTGCCAGAGTTGATGCTCTCCAAGCATCGCTCCACCACCACCACGTGGCACCGCCGCTGCCGGAGCTTCTCTCCCGCGGCGACGGAGGTGGGTCCGGGGATTTCGCGGTTGACCTGAACAAGATGCCCGAACCCGAGAGTGAGGACTGCAAATGGGATGTGAATTGA


Promoter Sequence:
>Vu_34759::LG10:14206705-14208705(+)
ATTATAATAATAATAATAATTGTATAGTACTTGTTATTCGTATCCGTTTTTCATGCTAAATTATTGTTTCAATTGAGTTGTGTCCCACAAGTTAAAAATTCGTTATTTTGTTTATTTTCTTCTGCTAAAAGATTACATTGAAAATTAAATTTATTATAATTATTTAATGAAGTAGTTCATACTAATATAATCACATTAATATACATAAAGTTTATACAAGTTAATACATTACTAGATTAATTCGTCGAATAAAAAAGTGCCATGAGAAATCCAATTACGGAAAGTTACACCTGTATTTCCTATTAAAATATTACTCCAAACAAGGATTAGATTTTAGTTGACAATTAAAGCACATAAAACAAATTATTAACAGGTAATTAAGCCGCCCATTAATATAATTAGCAGAGCACCAACTTAACATCGTGGGCCATAAAAATACGAACATCCCGATAATACCCCTGCGTGTGCCAACACTTTGAGAAGGGTAAACTCGGAATATAATCCAATCGTAATTGCGTGGAGGGAAAGTCAATTGTTAACGGTATCTATCCACCGACCACCGACCTACCTTCTGCCCACTCAGAATTATTAATTAGAAAAATATAAAATTACTGGATAATAACGAAAATGAAACAAAATATTATATGACTCAAAATAAATATTCTTTTTTTCTCTAACTAAATATCTTTGAAATTCTCCCATTTCATTAACCCGCAAACGACACAACCAACCATTATCACCATCATACACCTGATAATACCATCAACCCCATAATAAAATTTAATTATAGAGTCCCCAACAAAAATTATGACAGAAACAGATTTTAAATACAATCATCTATGTTTAAAAAATATTGTTTTTTTCATAAATTTAATATGAAAACTTAAGTATATTACCGTAAAACTATATTTTAAATCTAAATATATTATCAGTATTGGAATGTTCATAATAGTATTCTTAGAATCTCCAACTGTATTAATATTGTTCTTATTATTATCTCTTTAAAATTCAAAACGCTTATTTTAGTAAATTAAAAAAAAAATTGTAGTTAACTTTTGGAAACACCAATTACCATTATTATGTTTGATTGCTTTAAATGTGGGTTGAAGTCCACCACCGCTTATCCAAAGAGAGACTATTATTGTACCACTAACACACACGGTCTAATAGAATCATGTCTTTTTCCAACATCACTTTTTTTTTTCTAACAAGGTTAAATATGTTTTAGGACAGTAAATTTATTTTTAGTCCCTATTTTAAACTATATTTTAGTCTTTTTATTTAAAAAAACATTAATTTTTTATTCTTTCGAAAGGATAAAAAATTAAGATTTTTTAGAAGAGGAGAATTAAGACGTACCTTATTTTAAAAAAGACAAAAAATAATTTTTTTTATAATTTAAAGACTAAAAACATATTTAACCATTTTTACAATCATAAAAAGATATAATTTGTTTTCATAAACTTGTAAACAAAGAAAAAAAAAGAAATATGTTACATGTGTTAAAAGATCATATAACTTTTTCAATACAGTGATTAAAATTTATTGAAAATATTTTAACTTTTACCTTTTAATTTATATTTTAAGATTACTGTTAACTTTTTATATCTGATAAGAAATTGGGTCTACACATTTTAGATAAATAAAATCGTATTAGCTGTAAATATCACGAAACATTATTATCATATTCAAACCTTTTAGCCGCTTAATTTTTATTTTGTATAATATGTAAAGATGGATATAAAACAGAACGACAATCTGTTTTGAAGATTTCTAATAAATGATAATCATATTTATAAATAAGTATAGGTTTATTTAATTATAAAATATATAAAGAATTTGGGATTGAGCAAAGGAAAGATATATAAAAAGAAAAAGAAAAAAGAAGTGTATTGAGAGAGGGTGGAGTGACTGATTTTGTCGGTGAATTAATAATAAAAATGGAAATAGGGAAAAGGAAAGATGAGTTAATAATGAAAAAAATGGTAATTAAAAAGGGT


Gene Sequence:
>Vu_34759(+)
TGGCATTAAAAAAGAAAAGAGAAGAGGAAGAGGGTTCAAAGGAACCAACCAACCAACCATATAGCAACGTGGAGGCTTACAGAGATGACAAGCTTGGTGCTTCGACCTCTCTCCCTTATAACCCTTTCGTCTCGCATACTCCTTAGATTTTCATTCCTCATGGACCAGATTCCCTCTCTCTCTCTCTCTGATCTCATTTCAACCACACCAACCCAAGAACACAAAGCAACACAAGAGAAGAGAGAGATGGAACCTCAAGGAAGAACACAAGGAGGAGAGAGAGAACCCACAAGGAAGCGAAGCGGCGTGGCGGTGGCGGTGGAGGGAGAGAGAAAATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCGGAAATTAGGGAACCCAACAAGCGTTCCAGGATTTGGCTCGGTTCCTATTCCACCCCTGTCGCTGCCGCACGTGCTTACGACACAGCCGTATTTTACCTCAGGGGACCCTCCGCGCGGCTCAACTTCCCCGACCTTCTTGTTGGAGAGGGCGCCGCCCTTGTAGCCGGTTGCGACATGTCAGCTGCCTCTATTAGGAAGAAGGCCATCGAGGTCGGTGCCAGAGTTGATGCTCTCCAAGCATCGCTCCACCACCACCACGTGGCACCGCCGCTGCCGGAGCTTCTCTCCCGCGGCGACGGAGGTGGGTCCGGGGATTTCGCGGTTGACCTGAACAAGATGCCCGAACCCGAGAGTGAGGACTGCAAATGGGATGTGAATTGAAGGAAAAAAAAAAGGTGCGCGCTTTCGGGTTCGATGGCGTTGCTAACGAGCGGCGGGGAGGGTTTGCGACGGCTGAGGCAAAGTGATGTTGATGAGGCCTTGGGTGGTGTGGATTACTGTACTGTATCTTTTTTTCCTTCTACTTTCTTTCGGGTAGCTTTTTTTTTAGATTTTACAAAAGAAATTTTGTCGTTGTAAAAATTATGTTAAATGTAAATTAACTAGTCCGGTAGACTGTTTTGTGTT

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322856