Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34723 LG10 13838660 13843347 casein kinase II subunit alpha-2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   phosphorylation, regulation of response to DNA damage stimulus, chromatin organization, protein phosphorylation, DNA repair, DNA repair, chromatin organization, peptidyl-threonine phosphorylation, circadian rhythm, regulation of response to DNA damage stimulus, peptidyl-serine phosphorylation, phosphorylation, regulation of cell cycle, DNA repair, regulation of cell cycle, peptidyl-serine phosphorylation, response to UV-C, regulation of response to DNA damage stimulus, protein phosphorylation, peptidyl-threonine phosphorylation, regulation of cell cycle, regulation of circadian rhythm, regulation of cell cycle, response to gamma radiation, peptidyl-serine phosphorylation, regulation of response to DNA damage stimulus, protein phosphorylation, peptidyl-threonine phosphorylation
Cellular Component   is active in   nucleus, protein kinase CK2 complex, cytosol
Cellular Component   located in   nucleus, nucleolus
Molecular Function   enables   protein serine/threonine kinase activity, protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, kinase activity
Pathway   B 09122 Translation   C 03008 Ribosome biogenesis in eukaryotes [PATH:ko03008]
SNP Position Effect Amino acid change
C/T 13839198 downstream_gene_variant
A/T 13839229 downstream_gene_variant
T/A 13839230 downstream_gene_variant
G/A 13839341 synonymous_variant p.Val46Val
G/A 13839350 synonymous_variant p.Leu49Leu
T/G 13840114 downstream_gene_variant
C/T 13840479 downstream_gene_variant
C/T 13840480 downstream_gene_variant
T/C 13840504 downstream_gene_variant
G/A 13840748 missense_variant p.Met157Ile
A/G 13840753 missense_variant p.Asp159Gly
A/T 13840804 missense_variant p.Tyr176Phe
C/T 13840806 missense_variant p.His177Tyr
A/G 13840894 downstream_gene_variant
T/C 13840934 downstream_gene_variant
C/T 13840940 downstream_gene_variant
A/T 13840943 downstream_gene_variant
A/G 13841025 downstream_gene_variant
C/A 13841179 downstream_gene_variant
A/T 13841336 downstream_gene_variant
A/T 13841523 downstream_gene_variant
C/T 13841526 downstream_gene_variant
A/T 13841719 downstream_gene_variant
A/T 13841802 downstream_gene_variant
T/C 13842095 downstream_gene_variant
G/T,A 13842097 downstream_gene_variant
A/G 13842182 splice_region_variant&intron_variant
G/C 13842199 missense_variant p.Arg255Pro
G/C 13842442 downstream_gene_variant
T/A 13842512 downstream_gene_variant
T/*,G 13842533 downstream_gene_variant
T/C 13842539 downstream_gene_variant
T/G,A 13842574 downstream_gene_variant
T/G 13842582 downstream_gene_variant
A/G 13842586 downstream_gene_variant
C/T 13842649 downstream_gene_variant
G/C 13842654 downstream_gene_variant
A/C 13842729 downstream_gene_variant
C/T 13842735 downstream_gene_variant
T/G 13842871 downstream_gene_variant
A/T 13842876 downstream_gene_variant
G/T 13842896 downstream_gene_variant
A/G 13843022 downstream_gene_variant
C/T 13843068 downstream_gene_variant
T/C 13843093 downstream_gene_variant
T/A 13843097 downstream_gene_variant
G/A 13843114 downstream_gene_variant
C/A 13843149 downstream_gene_variant
C/T 13843257 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34723.1
MSKARVYADVNALRPKEYWDYESLTLQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGVMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKDYNVRVASRYFKGPELLVDLQEYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVTFVVLYNYLHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRT*


CDS Sequence:
>Vu_34723.1
ATGTCCAAGGCGCGCGTCTACGCCGATGTCAATGCTCTTCGTCCCAAAGAGTATTGGGACTACGAGTCCCTCACCCTTCAGTGGGGTGATCAAGATGATTATGAAGTTGTGCGAAAAGTGGGCAGAGGGAAATATAGTGAGGTTTTTGAAGGCATTAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCATTCCAAAACTCCTAGTTTGATATTTGAGTATGTCAACAGCACGGATTTTAAAGTTCTGTACCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCCTGGATTACTGCCACTCTCAAGGCGTTATGCACAGGGATGTCAAGCCTCATAATGTTATGATTGATCATGAGTTACGAAAACTTCGTTTGATTGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGACTATAACGTTCGTGTAGCTTCAAGATACTTCAAGGGTCCTGAACTTCTAGTTGATCTGCAAGAATATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGCCATGACAACCAGGATCAGCTTGTAAAAATAGCTAAGGTTACATTTGTCGTGCTTTACAATTATTTACACAGTCGAAAGCCGTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACAGGCTAACAGCTAAGGAAGCGATGGCACATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACATAG


Promoter Sequence:
>Vu_34723::LG10:13836660-13838660(+)
GGAAATATGCATACTAACTAAAAAGTGTTATAACGGGGAGAACTGCATGTCTTCCATTTAAATTTGAAAAATCTTATCTTCAAATAAATAGGGAATGTTACACCCAAGAATGTCTATACCTCTTTCATTAAAATTGTGATATATTCTTCATGTTTTTTGGAATTATAAGTGTAAGCTGTTTATCATCAGTCCCAGATGTTTGTAGATATTGAAAAGAACATGATATGATTATTACACCTTGATAGGGTAGCACTTACTCTAGAGGGGCATACACCTATTCTCTGGATAGAGCCCATTCATAATCGGAATTTGCAAACTAAGCAACTTAAAGTAAGAATTGTTTAAAAGTGGGGCTATTTGAATGAGGCTAATTAAAGGGGGCAGCAGTAAGAAAGAGTTCAAAAGTATGAATGTTTATGTATAATTTGTGATAATTTGATATTGGTAAGCAGAGTCTTTGGTTACATAATGAAAATATGTTTAGTTTACTAAATATCTATATAGGTTTATTAGAAATGAAAAAAAATAACACGAGATTTTCACCACAGATTTTTATTACTTATTATATCAAATAACTTAATAAAAGTAACAATTTATTGTAGTAAAAGGTCTTTATGAAGAAAAAAAGAAGTCAGAAAATGGGTTACAACGTACGGGTCAATCCGACTCACAAAAGATTCAGGCTGGATTGAGTTTGAAAAAATTGTATTTTTTATGTTAAAACCTGATTTATTTAAATCCGGTTCATGCGGATTAAATCCGTGGTGGGTCGGATTGGCCCACCAGTCCACCTATCTAATTTTATTTTATTAAAATTTAATTTTAATTTTATAAAAAATATTAATTTTTTTTTGTTTGAAAAAATTATTTAAGTTTTTTATTTTCAAAATTAATTAAACACCCATATTCATAGTGAAATTTGGGAATGAAATTTGTTTAAATTTGAATTATAGAAAGTTTGTAATTTGTTTTATTTAAAAAGAATTATAATTAAGTGAACTAGTGAGCTAACCCGTTTATCCACTAATTCGTGGTGAGTCGGGATGGATTTGAATTTTTTTGACTCAATAATAAATGAATCGGGTTGAATTGACTCACTAGTAACCAACCCGTGGTGGGTCATGTCGGGTCGGACTGAGCTGGATAGCCTGTTTTGACAGCTCTAAAAAAAACATATTTTTCACAAAATGTATTTAAAAAAATAGTAAAAGAAATATTCTAAACTTCAGATTACCTTAAAATTTAAAACTTCTCTTGTATTAAAGTTATGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTGAAAATAAATATAAACTAATCTTAATTATTTTTATTTCAGTCAATAATGTGATTCTAAAAATATCTGCAAATTAACCGAGATGCTATCACAGACAATATTTTGTCACTCTTAATATTAAATAAATTCCATTCTGTCATGGAAGTTTAACATGGGTGTAGTTAGAGGGCCAGTTGACAAAAAATCGCAAGCATAGGCACGTTGAAGGATTTTGAAAAAAAATCATCCTGAAAAGAGTAAAGAATCTTTGAGAGTGATTCTAATTGGGTTGCTAACAGATATTTTTTGGGACAAGTCAGTAATTGCCACGTGGATAGATTCTTAGGTAGACCCACAAAGCAAGAATCCTTGGTTGGGGATATATTTTAAAAAGAGCATAGGACCAAACGCAGCTTTATTACCTTCGCTGCTAAGCGTTGATAGACAGACAGAGGATGAGATGGGCCCATGAGATGAGAGATATGCGCACGAATAATCAATCACGCTATTAAAACTACTGCTCTGCTACTTGCTGCCTAGGCTACGCTACTGCGCACCCCTGTCTTCAATCTCTTACCCTGCGCATCTTCCAATCCTTTAAAACTAACACCATCGTCACTCTCGCACCAAAACCTTTCGCCAAAAACTCGGGATCTCAGATTCCACGCGCCAAACCA


Gene Sequence:
>Vu_34723(+)
ATGTCCAAGGCGCGCGTCTACGCCGATGTCAATGCTCTTCGTCCCAAAGAGTATTGGGACTACGAGTCCCTCACCCTTCAGTGGGGGTAATGTTCCGAACCCTAATTTTTATGTTAATGTTTCTGATCTCAGAGGGAACATTCCACTATCAAGGGAATTTTATTGTATGATTGTAGACTGTGTAGATGGTTTCTCAGCTGCTTTTTTTTTTTGTTTCATTGTTCCTCGTACCAATGGCTTCGGCAATCGTGTCTAGTATTTTGTATTAACCGACTGATGGATGCGGAATTGAGCCGTTTGTGTTGCACTGATATGATTTTGATTGGATCTGATGCTCTTGCTTAGGTTTTGTGTGGTAGGACCAGACACTTGAGCTGGTCCAGAATCACCTTGTACTGAAGAGTTGATTGATCAAGTTTGTTCTCTGTATCCTTAATATATCGTACATTTTTTTTCTTTTTTTAATTTTACCGAGCGAGTATTAATTGCTTCCTTTTTAGTTTATTTTCCATTTAAATGGAATCGGTGATATTGGAACCCTTTGATGATTTCTTGCCCATCCTGGACCAATTTCTTTAATTTTTAGTTTAAAAAATATTTCTATTTATGTGCCATATTTTTTATTTCAGTGATCAAGATGATTATGAAGTTGTGCGAAAAGTGGGCAGAGGGAAATATAGTGAGGTTTTTGAAGGCATTAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTGAAACCTGTCAAGAAAAAAAAGGTACTCCTTTATTAGTTTGTCATGCTTTTCTCCTTACTTGGGTACCTGCACACTATGAATTAAGCCAGCCAGTGCTGCTTTATGTGAACTATTCTCCTAATCTGCTGCATAGTGCACCTGTTTTTACTCTAAAAAAATTCACGCACACTCAAGCATTTTTATGAGGTCAGTGTTGTATTATAACCTTAAAATTCATTATGAGATGTTAAACACGACATAATATAATTAGTTTTTAACAGAGACTATAAATGTAGAAACACTTCTATGCGCTATCAACAAATAAATAGAAGGCATAATGACATTATGTGCAACATTGATATGATAATGGTTAGTTATATTGCAAGTCAGTGGACCCTCCGTATAGGGTTATAGGTGAATATTTGAGCTAAGCTTGATGAATTTTGTTCAAAACGGCTAGTGCCATTGTAAAATATCCAGAGGAGGGATTAAGGCAGACTCAACTTATTCTTTACACGGTCACACACCCGTCAATTGATTCATCCTATATATATGAATGACGTGGGTCTGCTGCACCTGCAATGCGGTTTTGCAAATTCCATTTTTGTGAATCAGTAGGATTACGTTGTCCAAATCAGTAGTCCTTCTTATGATGCGTTGGAATTAATAGTATACTTGTAAGCTCTTTTCCTTTGGATTGACAAATGAGTTGTTAATATTTTTAAATTTTGTTAATATAATAGTAATTCATATTTTCTTAACTTTATTTTGTTTGATAATATGCCATTTCAAATTCTTTTGATTTTTTTTCTTACTTTGTGAGTATTTCAACACCCTTTTCCAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCATTCCAAAACTCCTAGTTTGATATTTGAGTATGTCAACAGCACGGATTTTAAAGTTCTGTACCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGTGAGATATGTTCCTTCAATCTCCTGTATTATCATTGGTAGTTGATACTGCCATTTTTTATGTCCTCTCCATAAACATCATATTGTTTTTCCTTAAACCGTGTTTGAGTATCATATCTTAAAGAAGGCTCCGTGCATGAATACAATATGTTGATGTGTATAAGCCCTATAATCATTTTTTATGTACCCAATTTATTATTTTTAAATAATTGAGCAAATGTGTATTGAGAACCTTTTCTTGTTTTCTGAATGCTTTAGTGTTGAATTGCAGGCCCTGGATTACTGCCACTCTCAAGGCGTTATGCACAGGGATGTCAAGCCTCATAATGTTATGATTGATCATGAGTTACGAAAACTTCGTTTGATTGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGACTATAACGTTCGTGTAGCTTCAAGGTACTATCCTCTGAGCAATAAACCAGAGTTTCAAAGAACAGATGCGACATAGGAATGAATAAAATGGGGTGTATTGGTATTTGACAAAAATTGAAACCAATATGGCCTGAGACAACATTTCCTTTTCAGAATGGACAAATTTATTGCTTTATGGTCTTTTTTTCCCAGGCTTTAATTCTGAAGTTTTCGGGTGTACATATTCTACCATGTTTTCTAAGTTAAATCTGCCGAGGGTTTAATGTCAGTCTACTGGTATTCTAGTTTACTCCTTTAAGTACATTTCGAATGATCTTCATATAAACACATCACGGCTCCCTTATTTGATTTTCTTTTCACTTATAATTTATTTTTGTATAATCAATCATTGTTATCATTAAAACTTGACAAGAAAAATGATTATCTAAATTTTCCTAGGCTTATATTTTATGAGTGTAGTGCAAGTATAACATGTGATTTCTTTTTAAGTGTCATTGACCAAAATTGTCATGTGTTATGTTTTTGTTTCTCAGATACTTCAAGGGTCCTGAACTTCTAGTTGATCTGCAAGAATATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGGTAAGTATTATAACTACAAATAACTTGTCATATATGGGATACTCTTGACATCATTTATGCAGATGGTCTAAATTTGAACATACATGATTAAAATTTTGTAATTCTGGTTATGATTTCTTTTCTTGTACTTTGTGCAGATATTTCGCAAAGAACCTTTCTTTTATGGCCATGACAACCAGGATCAGCTTGTAAAAATAGCTAAGGTTACATTTGTCGTGCTTTACAATTATTTGTAAATTTTTGGTTACCTTGATGTCGTTGTTGTACCCAGCAATATCATTTTTAGTTCCAAGCTATGATATCTTGTCCTCCATTAAATGTGGTTCACAAAGTATAAAATAATTGACCATTGTTTAGCATTATTAATTTTTAACCAAGTTTCCCGATCCTAACAAGCCATTGTAGATATACTTTTCTTTCTGTATTCAAGTTATCGGTATATTTATTGTTACTGTTTTTAATTATTAGTGATATGTAGGTGCTTGGGACTGATGAACTGAATGCGTATCTTAATAAATATCATCTGGAACTTGATCCTCAACTTGATGCGCTTGTTGGAAGGTATCCCCAACTACATTTATCATTAACTGTTTATCATAAATGATTTCCACGGGACTTTATCATTTTATCATTTTCCTCTTCAAGCTCTCCTTGGAAGCGTGCTGATTTTATTTTAACTTTATTTTCTCTTGGTAGATAAATGAACACATTTTATTATGTAATGCAATTTTGTATTGCAGACACAGTCGAAAGCCGTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGTGGGTCTTCAATATTCCTATTTGACATTGTTAACCTTCTGATTTAGTGTGGACTGCATTTTAATAAATTCTTGTATGGCATGTAGGCAATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACAGGCTAACAGCTAAGGAAGCGATGGTAACGATAAACAGCTCCTTAGTTTGTAATTTTCTTGATGTCGTTGCATTAACTTTAAAATCATTTGCTTTAACAAATATTTATATTTTTTAGAAACTTACAAGTTTCGTCATTTAAGTTCAATCTACGTTTTTGTTAGTCTTATGTTTTATTCAATTTCATCCTCTGTTTTTTTTCCTTGCCAAAGTTTTTCTCCAAGTTTACGATATGATGGGGCCTTGCAAGTTATTTTTCACTGTCAACATTCTGGAGAAAGGTTTCATCATTTGTACTTGAATGTCAAATCGACATCCAAAGCTGTCAAATAACCACCAGAAACCTTTAAAATGTCCCTGTCGCATCTTTGTTCACCATTTAGACATCCAACCACTACTGTGGAGTTAATCATAATTGACCAGATATTTTACCTGTATCTCTCTCTATCGCATTCACCACTATCATGAATCATATCCAAGCACCAAAACATCCTCTGAAAAGTTGGAAGACAAAGTGAGATTCAAGCAAAACGTTGTCACGAAAACAAGTAGTGACCAAAAATAACTCAATACTGAATTGATTAAAAGATTTAGATCAAATTGAAAAACCCACATTAAATTAAGAGGACAAAAATTATGATTCCATTGTTTTTGGCATATTTCTAATGAGAAAATATATTGACACTTTTACACTCATTTCACACATTATTTCTCATTTTTTCATTATAAAAATCATGTCAAATCACACATCATAAACCTTGTACAAAAGTTCTTTTCTCACTCTTTCTCCATGTGTCATTTGAGTGTTATTATTTTGAATGTCAATCTATCATTTTTCCTTATTAATTAGTTTATTTATTTTCAAGCTGCTTGCACTAACTTTTTTCTGTCATTTTGGTGTTTGTCCCTGCAGGCACATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACATAG