Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34676 LG10 13299251 13300618 PREDICTED: transcription factor RAX3-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 13299260 missense_variant p.Ala4Ser
C/T 13299454 intron_variant
T/C 13299994 missense_variant p.Met139Thr
G/T,* 13300195 missense_variant p.Ser206Ile
T/C 13300350 missense_variant p.Ser258Pro
A/T 13300467 missense_variant p.Thr297Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34676.1
MGRAPCCDKANVKKGPWSPEEDAKLKAYIEHHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQIQARRVSNNQQKQDVKRETENLIAASEVINQVPYWSAEYSSLPLPVTDVCFQHYSLNNQTSLRNLMVNKLEGIRFSNDHHQQQQQQPYTNACEIPSLPNQVFPTMVNHVAVVSDENNSVPYQPSNIFQGFENFPSDFCELVCVNSQEMDRSMEGFNYGRESMDVMSNGGSTNTTSTESTSWGDMNSLVYSPLVSDYEGCRQGNPGDVVGFEECNYFGMQMQ*


CDS Sequence:
>Vu_34676.1
ATGGGAAGGGCTCCTTGTTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGGCTTATATTGAGCACCATGGTACTGGTGGCAACTGGATAGCCTTGCCCCAGAAAATAGGCCTTAAGAGATGCGGGAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCAAACATCAAACATGGGGGATTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTTTACGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGATATAAAGAACTATTGGAACACTAGGCTAAAGAAGAAGCTTCTTGGCAAACAAAGAAAGGAACAGCAGATTCAAGCTCGCCGTGTCAGCAACAATCAGCAGAAGCAAGATGTGAAAAGAGAAACCGAGAATTTGATAGCAGCTTCTGAAGTCATCAATCAAGTCCCCTATTGGTCTGCAGAATATTCTTCTTTGCCTCTCCCAGTGACTGATGTTTGCTTTCAACACTACAGTCTGAACAATCAAACTTCTCTCAGAAACTTGATGGTTAACAAACTAGAGGGAATTAGATTTTCCAACGATCATCATCAGCAGCAGCAGCAGCAGCCATACACCAATGCATGTGAAATTCCCTCCCTGCCAAACCAGGTTTTTCCAACCATGGTAAATCATGTGGCCGTCGTGAGTGATGAAAACAATAGCGTCCCTTATCAGCCATCAAATATATTTCAAGGGTTTGAAAACTTCCCGAGTGATTTTTGCGAACTGGTCTGCGTGAACTCGCAAGAAATGGATCGGTCAATGGAGGGTTTTAACTACGGAAGGGAATCCATGGACGTCATGAGCAATGGTGGTAGCACCAACACAACTTCAACAGAAAGCACTAGTTGGGGTGACATGAACTCTTTGGTCTACTCACCTTTGGTTTCTGACTACGAAGGTTGCCGACAGGGAAATCCTGGAGATGTTGTTGGTTTCGAAGAGTGTAACTACTTTGGAATGCAGATGCAATAA


Promoter Sequence:
>Vu_34676::LG10:13297251-13299251(+)
AGTGACATGACATTTGAAATTTTGTCTTAAATACTGCCGTCGCCCAAAACGAACGGCCACTCCCTTGCAACCACCTGTTCTCCACTAACTGAGACACTCACTCACTTCTTGGTACATGGATCCCACTACTTGGGTTTTTGAGTGTGTTTTAATGGAGTGTGACATATGCTACTAATTCAAAACAATATAAGTTTATAAAAAATTGTAATCGTGAGCTATTTTCGGTCTCCAAAATATGTTTAGATAAATAAGTTTATCTATTTTTAAAATTAAGCAAATTTCGTCTTTCTCTATCTATTTACTTTGACTTAAAACATTCAAATTTTAATTTTCTACTCAAAATTTCTGTACCTTTGATTGGACTAAATTGTTTTCATTTTCCTCCAAACTTACCAACTAAAACATTATTTTTCGCAAAAAATAAAAAGTCACATATCTTTCTTTTTCAAACTTTAATTTCGCACCCTACTATGGTTTTCTAACTTCATTCAATGTTTGCTAACTTTCTGCTAAATATCTAAAGTGATTTAATAAATTCATCAGAAGTCCGAAATGTTGGACGTAAAATGAGAATTTAAGGGTAGATAGAAAAAAATTATCATTGTTTTTTATTTATAATTGCAAAAAGTATCACCTTATTTCATTTTTATTTTTAAAAGTTTACGTAGTAATATAATAAAAGGTCATTTCCTAATTTTCTATAGAATAAAAAAAACAAAATATCTTGAGGATAATTTTTTTTAAAATGTAAATTTCTTTCACTATGCGCGTTGATACATTTACAACCACTCAAATGCGTACTCTCTCTACACAATTGATTTATTAATTTTTATTTAACAATTTAGTTTATATTTTATTTAAATATCTTAATTTAATATTTTATTATTATTTGAAGTTGTTAAAAACTTATACTGTAAATGTATCTAAATGAATGTGAGAAAGAGGAGAGAAGCCATCAATATTAATTAGCCCTAATTTACGTGAGACTGTCCTATTATCATTATAATTGGGAGGATGTGATGAAACTTGGTATATATATCACTTTCATTACACAAAGATATCAAGCACCAATCAGATTAATTCCATATTATATATTTTAGTAATGATTTATATTTATTTCAAAATAACAAAACAAATATACAAAATCGAAAGCTTTCTTCAACGTTTATGTTTCAAATGTGGATAAATTATCCATTATGATTGAATGAGTGAACCATAGACAGTTCAGAACTTCTTTTTAGCATTGGTAAAAGGTTTGAAAAGTTGTGGTAAAGTCTCACACATGTCGTCCCCATAAGATTATCATGAGTGGCCAAATGGAGTAAATTGTTGAACTGATTTAGGTTTTTGGTAAAGTAGTTCCATATGACAAACATGAACACTCATTCTGGTTCTTTATCCAAGAGTCACTCATCTGGGCATTACGTAATCAAAGAAAGAACCATTCAACGAAATGAGGTTTCACCGCTTTAACCTTTCACCTTTGGTCCCACTGCTTGCACCATGCACGAGGTTTATGATCACCCTTCCACAACAATAATTCATATCTTCCTTCCTTCAACAAAATAATATATGAGAGAGACTGCATGATGATGATACATAAATAAAGAGTTATACATTATTCATATCCATGCTTTCTGTAAACATTTTCTTATAATTCCATTTTTAATTATAGAGTATACATAGTAAGAAGGACAAACAAAAATAAAGGTCTATTTCCAGCCATTATTTTAAGCATAAAGGAATATCTCTTCCTTCCTTCACCTTTTTGAAACCTTCCAAAGCTCTCTCTCTCTCTCTCCTTCTCCAGGCTATTTCTCTCTCCTCTTTATCCCCCTCTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAAACACACCATTATTATCGTTATACTCAACCCATAAGAAAGATTGGCTTACTTGAGACTCAGACCAACTGACACAGAGAGAGAGGGTGGCAGAGCAGACA


Gene Sequence:
>Vu_34676(+)
ATGGGAAGGGCTCCTTGTTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGGCTTATATTGAGCACCATGGTACTGGTGGCAACTGGATAGCCTTGCCCCAGAAAATAGGTTTGCTCTCCATCTCTATTCATCAATCAACACATGTCGATTAAATATTATTGCAAACCAAACTTCTCAATTACATATATATAATGATTTAACTTGCCAATCTTATTTTAGAACACAGAATTCTTTAGGTTGTTTCTTATTTTCTTTGTATGTGTGTGGTTTAGGCCTTAAGAGATGCGGGAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCAAACATCAAACATGGGGGATTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTTTACGTCAGTATTGGAAGCAGGTAATTAAATAAGTTCCCTATTGATCTGCTAAAATTAATTTGAATTCGTTATTCAAGTTAATTAAGGAGTCTCTATTTATGTAGAATTAAGCAGTGTCTGATGTAAACTTGAAACCCAATTAATTGATCGCTTAGAACTTGCCGGAATACATACATGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGATATAAAGAACTATTGGAACACTAGGCTAAAGAAGAAGCTTCTTGGCAAACAAAGAAAGGAACAGCAGATTCAAGCTCGCCGTGTCAGCAACAATCAGCAGAAGCAAGATGTGAAAAGAGAAACCGAGAATTTGATAGCAGCTTCTGAAGTCATCAATCAAGTCCCCTATTGGTCTGCAGAATATTCTTCTTTGCCTCTCCCAGTGACTGATGTTTGCTTTCAACACTACAGTCTGAACAATCAAACTTCTCTCAGAAACTTGATGGTTAACAAACTAGAGGGAATTAGATTTTCCAACGATCATCATCAGCAGCAGCAGCAGCAGCCATACACCAATGCATGTGAAATTCCCTCCCTGCCAAACCAGGTTTTTCCAACCATGGTAAATCATGTGGCCGTCGTGAGTGATGAAAACAATAGCGTCCCTTATCAGCCATCAAATATATTTCAAGGGTTTGAAAACTTCCCGAGTGATTTTTGCGAACTGGTCTGCGTGAACTCGCAAGAAATGGATCGGTCAATGGAGGGTTTTAACTACGGAAGGGAATCCATGGACGTCATGAGCAATGGTGGTAGCACCAACACAACTTCAACAGAAAGCACTAGTTGGGGTGACATGAACTCTTTGGTCTACTCACCTTTGGTTTCTGACTACGAAGGTTGCCGACAGGGAAATCCTGGAGATGTTGTTGGTTTCGAAGAGTGTAACTACTTTGGAATGCAGATGCAATAA