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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34670 LG10 13212173 13213768 G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 13212690 synonymous_variant p.Ala311Ala
A/T 13212831 missense_variant p.Phe264Leu
G/C 13212884 missense_variant p.Gln247Glu
T/A 13213009 intron_variant
A/G 13213207 missense_variant&splice_region_variant p.Tyr165His
G/T 13213212 splice_region_variant&intron_variant
C/T 13213398 missense_variant p.Arg124His
A/T 13213476 missense_variant p.Met98Lys
T/C 13213483 missense_variant p.Thr96Ala
A/G 13213500 missense_variant p.Val90Ala
G/T 13213515 missense_variant p.Ala85Glu
A/G 13213621 missense_variant p.Tyr50His
C/T 13213632 missense_variant p.Gly46Glu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34670.1
MQDDGNFVIKDSNLVSVWQSFNSPTNTILPGQTLLSTKTLFCKGEGPSNYSLGSFMLQMQEDGNLVLKAYLWADPAYWYTSPITANMTLVFNATTTLMYRVDDAGNIFTLTEITPTPVEDYYHRATIDENGNFQQYAYHKRNGTGWRRVWRAEDPCRVNAICGVLYPNVDDAGNIFTLTEITPTPVEDYYHRATIDENGNFQQYAYHKRNGTGWRRVWRAEDPCRVNGYIPLDDQDVSKGCHPPAVINYCAENNFKLQVFDDTDFYFDTHLVSLASVDFESCKKDVIDDCNIVAATYDHSTSTCAKKRLPLPNARNNSSSKGLKALLKVANRIESGTSELPKKKCFNVRVFLKVLVAVTATLACFFGALAVYYHPFTRRLTRKKKHLNATTIRINFREFTFQELHEATDGFTKILGKGASGKVYRDALVIGDAEIDVAVKKLEKKIEKSDSEFTTELKIIGRTHHRNLVRHSSSEKNSREITI*


CDS Sequence:
>Vu_34670.1
ATGCAAGATGATGGCAATTTTGTCATCAAGGACTCCAACTTAGTATCTGTCTGGCAGAGTTTCAACTCTCCAACCAACACCATCTTACCGGGCCAAACCTTGCTGAGTACTAAAACCCTCTTTTGCAAAGGGGAAGGACCTTCAAACTACTCGTTGGGAAGTTTCATGTTACAAATGCAAGAAGATGGCAACTTGGTGCTCAAAGCGTACCTGTGGGCAGACCCTGCATACTGGTACACTTCACCCATAACCGCAAATATGACATTGGTGTTTAATGCTACCACTACTCTCATGTACCGTGTCGACGATGCTGGGAACATCTTCACCCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGCGCTACAATAGATGAGAATGGGAATTTCCAGCAATATGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCGGAGGATCCCTGCAGAGTGAATGCTATCTGTGGTGTGTTATATCCCAATGTCGACGATGCTGGGAACATCTTCACCCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGCGCTACAATAGATGAGAATGGGAATTTCCAGCAATATGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCGGAGGATCCCTGCAGAGTGAATGGTTATATCCCTTTGGATGATCAAGATGTTTCCAAAGGGTGTCACCCACCAGCTGTCATCAATTACTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACTGATTTCTATTTTGATACTCATCTTGTTAGCTTAGCTAGCGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACCTCCACATGTGCTAAGAAGAGACTGCCCTTGCCGAATGCTAGAAATAACTCTTCCTCAAAGGGATTGAAAGCACTGCTTAAAGTTGCTAACAGGATTGAGTCTGGGACATCTGAACTTCCTAAGAAGAAATGTTTTAATGTAAGAGTCTTTTTGAAGGTTCTTGTTGCAGTTACTGCAACTCTTGCATGTTTCTTTGGTGCACTTGCCGTCTACTATCATCCTTTCACTCGGAGACTTACAAGGAAAAAGAAGCATCTGAATGCAACAACTATTAGAATCAACTTCAGAGAATTTACCTTTCAGGAACTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGAAAAGTCTATCGTGATGCTTTAGTAATAGGTGATGCAGAGATTGATGTTGCAGTAAAGAAACTGGAAAAGAAAATAGAAAAAAGTGATAGTGAATTCACTACCGAGCTCAAAATTATTGGTCGTACTCATCACAGAAATTTGGTGAGGCACTCAAGTTCAGAAAAAAACAGTAGGGAGATCACAATATAA


Promoter Sequence:
>Vu_34670::LG10:13213768-13215768(-)
TTCTTTCTTAGCTCTCACGCTTGCTGTGTATCATCATAAAAAGCCTAACAGAAGCAACATAATTGCAACACGATAAAAAAAACGGTATAGTACATTCATTTATTATTTTATATACTTTAATTGCAACAGAGGGTGTCTCTGATAGGGAAATTTGAGAAGTTGGACGTATGTATAATCTAAATAGGGTACTCTTGTTGTCTACAACTTTAAAAATAGAATTATTCTTTCAGAAAATAGGTTTATCATTTATGAAAAACTCAGTGTTTCGGTTGAAAGTGTATGAGGTTTGGTCGTCCTTCTTTGTTCTGCTTTTTTTCAACCGTTTAATCCTCTTCAATAACATAATCCACTCCAATGGGTTGTTGACTTACAAGTCAAATATCATTTAAATAGATCAATGTTATTTTACCTGCACATCAAATCGTATATTTATAGGACTTGTAGCAGTCAAACACATTAATTAATCATTGATGCAGTATATTTTTAGCAAACCCAATAATTAATTATTATTAACAGAGTATATCTGTAAGGCAATCTGACCCATTAATACCTTAGCGTGCTAACTACCCATAAATGATCATTAACTTCGATCGGTATATTTCATACAGTAGATTCGACATTAAATGTAACCTACATAATGTCATATGTATATAAATAAACTATTGCTTAACATGGACAAGATCCACTACGGTTTAACTAATATTCAGTGCTTCACATTATTTTCCTTTTTTACTTTATAAACCATTTTATCGCTAAGGCTTTGTTGAGGGGATTTGAGAGGATTTCAAAGTAAATTTTGTTGTTGTTTATTTGAGTAGATTTGGAGGTAAGTGAGTGTGAATTTAGAAGGAAAGTTTGTAAATATTAGTATAGGATTTGATTGATGTGACATATTAAAAAAAATTACTTCCAAATTTACTCTCACTTACTCTCAAATAAAAAACGAAAAAATTTACCTTCAAATCCTCTCAATTACTCTCTTCCAAATCTATTTAAGTGAACAAAGCCTAAAATAACTGGTAATGAAGATTTTAGGGAGCTATTTATGACCTAATTACTCGTGCATCTTATTAATTTAATGACATTTTTCATCAATTCGAAATATTTTTTAAAAATTAAAAGTACATTTGAAAAGTATTTTACAAGAAAGTAAAAGAAAAAAAGTGTAGAAAGTAAAGGATGTTTCCGAAAATATTTCCCAAATCTAAAATTAATTTCCGAAATATTCAATCTAAAAATATTAAAAATAAAGAAGTTTGGGGAATACAACTTTCATGGAAGTGCAGGAAGAAAAAAGGAAGGTGCAGTAAGAAATACCTTTTTTCCATGTATTTGTTTTTAGCTTGTGTTCTTGGGCTTTATGGGCTTTAGCATTACCTAAAGACAAGTTTTTAATCCCTGCAACGCAAGATTTTTTTTTTCTTTAATTTTAAAATATAAAAATTAACGTTATAGAAGAAAACATTTTTTTAAAGTAAAATATTTAAAATAAAAATCAAAATTATACATGCTTAATAAGAATAGTATGATATACAATTAACTTATTTCCAATGTGTATAGTAATATTTTATATTCAAGTCATTATGGTTTTATTGAGTAATTATTTTTTTAAGATTATTTTTTCAAATTATTTCAAAATATTTTTTGACAAATTAAAATTTGTAATATATATATATATATATATATATATATATATATATATATAAAAGAGTTATTTTTTATAATTAATGAAACCACCAAAAATAAAATAAACGAGTTAACACCAAGGTAAGTAGGATTAAAGTAGTAATTCAAAAGCATTTATATAATTATTCTTAATACACATATAATTAAATAAATTACATTTTGTAATTATTTCATTACCAATGATTTAAAGTATTTTGAATTGAAACGGTATTTTAGTATAAAAATGAAAAAGATTGATTGAGATTTGAAGGCAAGTCAAAGTCATGTTAAACATCAATTTTGAAAGTTAATTGACACACACAACTTCTGTCTAC


Gene Sequence:
>Vu_34670(-)
ATGCAAGATGATGGCAATTTTGTCATCAAGGACTCCAACTTAGTATCTGTCTGGCAGAGTTTCAACTCTCCAACCAACACCATCTTACCGGGCCAAACCTTGCTGAGTACTAAAACCCTCTTTTGCAAAGGGGAAGGACCTTCAAACTACTCGTTGGGAAGTTTCATGTTACAAATGCAAGAAGATGGCAACTTGGTGCTCAAAGCGTACCTGTGGGCAGACCCTGCATACTGGTACACTTCACCCATAACCGCAAATATGACATTGGTGTTTAATGCTACCACTACTCTCATGTACCGTGTCGACGATGCTGGGAACATCTTCACCCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGCGCTACAATAGATGAGAATGGGAATTTCCAGCAATATGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCGGAGGATCCCTGCAGAGTGAATGCTATCTGTGGTGTGTATGGCTTGTGCACTTCTCTTGACAATGAATCAATCAAGTGTGAGTGTATTCCAGGTTATATTCCAGGTTATATCCCAATGTCGACGATGCTGGGAACATCTTCACCCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGCGCTACAATAGATGAGAATGGGAATTTCCAGCAATATGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCGGAGGATCCCTGCAGAGTGAATGGTGAATGCTATCTGTGGTGTGTATGGCTTGTGCACTTCTCTTGACAATGAATCAATCAAGTGTGAGTGTATTCCAGGTTATATCCCTTTGGATGATCAAGATGTTTCCAAAGGGTGTCACCCACCAGCTGTCATCAATTACTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACTGATTTCTATTTTGATACTCATCTTGTTAGCTTAGCTAGCGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATGACCATTCCACCTCCACATGTGCTAAGAAGAGACTGCCCTTGCCGAATGCTAGAAATAACTCTTCCTCAAAGGGATTGAAAGCACTGCTTAAAGTTGCTAACAGGATTGAGTCTGGGACATCTGAACTTCCTAAGAAGAAATGTTTTAATGTAAGAGTCTTTTTGAAGGTTCTTGTTGCAGTTACTGCAACTCTTGCATGTTTCTTTGGTGCACTTGCCGTCTACTATCATCCTTTCACTCGGAGACTTACAAGGAAAAAGAAGCATCTGAATGCAACAACTATTAGAATCAACTTCAGAGAATTTACCTTTCAGGAACTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGAAAAGTCTATCGTGATGCTTTAGTAATAGGTGATGCAGAGATTGATGTTGCAGTAAAGAAACTGGAAAAGAAAATAGAAAAAAGTGATAGTGAATTCACTACCGAGCTCAAAATTATTGGTCGTACTCATCACAGAAATTTGGTGAGGCACTCAAGTTCAGAAAAAAACAGTAGGGAGATCACAATATAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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