Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34664 LG10 13169087 13172499 PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 13169185 missense_variant p.Lys33Asn
A/T 13169258 intron_variant
G/T 13169474 intron_variant
C/G 13169905 intron_variant
T/C 13170034 intron_variant
T/C 13170044 intron_variant
T/A 13170054 intron_variant
G/A 13170137 intron_variant
C/T 13170285 intron_variant
G/C 13170305 intron_variant
C/G 13170348 intron_variant
A/G 13170644 missense_variant p.Ser115Gly
G/A 13170645 missense_variant p.Ser115Asn
T/A 13170648 missense_variant p.Val116Asp
C/T 13170771 missense_variant p.Ser157Phe
C/T 13170782 missense_variant p.Arg161Cys
G/A 13170787 synonymous_variant p.Gln162Gln
C/T 13170802 synonymous_variant p.His167His
C/T 13170815 missense_variant p.His172Tyr
C/G 13170826 missense_variant p.Asn175Lys
G/T 13170828 missense_variant p.Trp176Leu
G/T 13170845 stop_gained p.Glu182*
A/C 13170852 stop_lost p.Ter184Serext*?
T/C 13170875 missense_variant p.Trp192Arg
T/C 13170893 missense_variant p.Cys198Arg
G/A 13170897 missense_variant p.Gly199Asp
C/G 13171070 missense_variant p.Leu257Val
C/T 13171196 stop_gained p.Gln299*
T/A 13171213 synonymous_variant p.Ala304Ala
T/C 13171520 upstream_gene_variant
G/T 13171905 upstream_gene_variant
G/A 13171941 upstream_gene_variant
A/C 13171946 upstream_gene_variant
A/G 13171968 upstream_gene_variant
T/C 13171986 upstream_gene_variant
A/C 13172098 upstream_gene_variant
A/T 13172104 upstream_gene_variant
A/G 13172105 upstream_gene_variant
G/T 13172110 upstream_gene_variant
T/C 13172121 upstream_gene_variant
C/A 13172208 missense_variant p.His355Asn
A/G 13172320 missense_variant p.Lys392Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34664.1
MIPFIYFNQETRVSSHQSCPLPTCHHLHACMKKKISYHEGRSRFESRTQQQELPKYLCKRNKLERLITFANRFSGTLPEQYGECDSLQYVRIQNNQLSGQVPPAFWALTGLQFLEVSNNRFEGSVSASISAAFTKLILSANDFSGKFPTRICQLPHLLEIDVSKNRFTGEVPTCITGLKKLQKLKMQENMFTGEIPSNVALWNDMTELNLSFNRFSGSIPRELGSLHDLTNLDLASNSLTGEIPVELTNLRLNQFNVSDNNLYGEVPSGFNHQMYFSSLEGNPGLCSGVIKTLPPCSKRRPFSLLAIVVLVACASLLVGSMLWYLKSKTRQYAYTMKVNEKSDVYSFGVVLMELVTGKRPNDSSFGENKDVVKWMTEIVLSTSSERGSGNVGRGKEYIMTKIVDPRLNRSTCDYEEVEKVLNVALLCTSAFPINRPSMRRVVELLKDHKLP*


CDS Sequence:
>Vu_34664.1
ATGATACCTTTTATATACTTCAACCAAGAGACCCGCGTGAGCTCCCATCAGTCATGTCCGCTTCCCACTTGTCATCATTTGCACGCATGCATGAAGAAGAAGATCAGCTATCACGAGGGAAGGAGCCGGTTTGAGTCTCGTACCCAACAACAAGAGTTGCCAAAGTACCTCTGCAAAAGAAACAAACTCGAGCGTCTTATCACGTTCGCGAATCGCTTCTCAGGAACGCTCCCTGAGCAATACGGGGAGTGTGATTCACTTCAGTATGTCAGAATCCAGAACAACCAGTTATCAGGCCAGGTGCCTCCAGCTTTTTGGGCCCTTACAGGACTTCAGTTTCTTGAAGTGTCCAACAACAGGTTTGAAGGTTCTGTCTCTGCTTCCATCTCTGCGGCATTCACCAAACTCATTTTGTCTGCTAACGATTTTTCTGGCAAATTCCCAACGCGAATCTGCCAACTCCCTCACCTTCTGGAGATTGACGTCAGCAAGAACCGCTTCACCGGTGAAGTTCCCACGTGCATAACTGGGTTGAAAAAGTTACAGAAACTTAAGATGCAAGAGAACATGTTCACTGGCGAAATACCCAGTAATGTGGCCCTCTGGAACGACATGACAGAGTTGAACCTGTCATTTAACCGATTTTCGGGTTCAATCCCGCGAGAACTTGGCAGTTTACACGATTTGACAAACCTTGATCTCGCCAGTAATTCTTTAACGGGGGAGATTCCGGTGGAGTTGACGAACCTCAGACTCAACCAGTTCAACGTCTCTGATAACAATCTTTACGGGGAGGTTCCTTCAGGTTTCAACCACCAAATGTACTTTTCCAGTCTAGAGGGAAACCCAGGTCTGTGCAGCGGCGTCATCAAAACCCTACCTCCTTGTTCAAAACGCAGGCCGTTTTCTCTGCTTGCGATTGTCGTTTTAGTTGCCTGCGCTTCGCTCCTTGTGGGGTCCATGTTGTGGTACCTGAAGAGCAAGACTCGCCAGTATGCTTATACAATGAAAGTGAACGAGAAGAGCGATGTGTATAGTTTTGGGGTTGTGCTGATGGAATTGGTCACCGGGAAGAGGCCAAATGACTCTTCATTTGGTGAGAACAAGGATGTAGTGAAATGGATGACTGAGATTGTTTTATCAACGTCCTCTGAAAGAGGAAGTGGCAATGTGGGAAGAGGTAAAGAGTATATTATGACCAAGATTGTGGACCCAAGATTGAACCGAAGCACTTGTGACTATGAAGAGGTTGAGAAGGTTTTAAATGTGGCCCTACTCTGCACCTCAGCATTTCCCATTAATAGACCTTCCATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGCCATGA


Promoter Sequence:
>Vu_34664::LG10:13167087-13169087(+)
TACCATAAACAGAAGATTAGCATGTCTTCTCTTGTCGCTTATGTGTATATGATTCTATATAGATGTGGTAACAGAGAATCTAATAGCCAATGTCTCTAATAATAAACCACAATGCTGAAGTAGCTCAACTAATTTGACCTTTTGTTTCGTTACAAGTTATTTTATACAGAATGTAACATTAAATATGCCATTTGCTTACAAATGCTTGCCAGTGCCTCCCTCCCATAGCCAGTAACTAAGAAGTCCATGACATTATGATAAATGGCCATGAAACTACAGCTTCATGACGCGTAAACAGAGGTATCTTTTTTTCTAGTTCAATGACCAAATGATGTTTTATCACGACTCACGACTAATTCTTTTGCCAACTTGCAAAGGTCACTGTCACCTTATCAAGATTAATAGTGAATTGCACTGACATGGTGACAATATTCAGCAGTACAACTGTGGAGTCAGCAAATGCATTTATTATACGGTTCATTATTTTGTGATGCTGTATTTGGTGCCAAAGGAGTCAACCATCACGAGAGCTGGTTAAGTTCTTCTGCATGCTTGTAGTAATTTCTTGGCTAACAACGAGTAAACCGTGCCACATTTTGTTTGGATTGCGTCATCAGTCATTACTTTTTTTTTTTATCAGCGCAATAGCCATTACGTTAAGTATAACTCGTGTAACTTAATTTAATTGATGCTTTGAAGCATAAAATAGTGCTATAATTCGAACTACTATAATGAAGTGGAATGGGAAGAAGTGAGGTTCATTAAGTACTAGTATTTCTTTATTTACAATGACTCTCGGGAATAATATTGTAAAGGGGAAGAAGGTGGGAGACAACTCCTGTCTTGTACCAAATAGCTGATTCTTCACGGCGACGCAGAGCCAGGAGCTTCACATTATTCCCAAACATTAACTTCTGTATTTTAAAATTCCATTTTCAAATCTGTAATAGATCTTATGATGTTTGGAAATTTAACTGCAATGCTTTTGTCATTTTCCCATCTCAGCAGTGAGGCTTTACTTATTCTCACACCCAAGCCTGTGGTACTGTAGCTGGCTACCTGCGTATCAAAATTATCAAGCAATTCTATTCTTAGTTAGTTTGACGTATGTGAGTGAAAGGTTATAGTGTTTTATTTCGTAACGTTTTGGTAGCTTCTAGTCTTTTTTATGTGACTAAGAATATACCTCAGAGGTTCAATGAACTATTGATACATTCAGAGCTCACACTGTGATGTCTTTATGAGTAAATAGATAGTTTATATCCTGTTACGTAGATTAAAACTGTTAATACGATATTAAAATCTGAGCATTTAAATAAATATGGTTTTCTAAAATGATAAATTGAGAATCGACTTGTGACAAAATAAATCGGAAGGAATTATTGATTAGTTTATTGTTTCCTTTGTTATCACTTTCTTCTGTGTACCTAATTCACCCCGATGAGGTGGATGTGTATGATTATTATTCCTGTTCTTTCCAAAGTACTAGTTGTTCTTACAGTAGAATATAGGTGTAGGGTGGAACAAATTCTATTTCTGAATTTTAGAATGTCTGAGTTATAGGATCAGAAACTCTTATAATACGTATGGTGCCTTTTCAGTTGCATTATTCATGTAGAAGAAAGAGGAAAGTGAATTGGTGTCAAACTCAAATGATGTGATCCACACCAAACTAGTCCAAATAAAATCCAAAGTCTTACAACACAGCTCTTTGGTGATACCAGGAACCTACAACAGTATCATTTATCTGGCTGGTGTCAAAGTGTCATCCACCAGAAAGCGATCCCAAAAGTGATTCTTCTTTCTGGAAGTATGCCTCTGTCCATTGGCAGTGTCCCATGTTCTCCGCTTCAGGTTCGGCGTGTACAGTAAAAGTAGTTCCTTTTTGCCACTTCTCTCACTACTTTGAAAATACGCCAACACGAATCACGTCTCTGATACACAAACGTCCATTTCCACTCCACAGTCAACTTCCCTTTCCCTCTCATAATCCTAAAAGA


Gene Sequence:
>Vu_34664(+)
ATGATACCTTTTATATACTTCAACCAAGAGACCCGCGTGAGCTCCCATCAGTCATGTCCGCTTCCCACTTGTCATCATTTGCACGCATGCATGAAGAAGAAGATCAGCTATCACGAGGGAAGGAGCCGGTTTGAGTCTCGTACCCAACAACAAGGTCCCAAGGTTCCATCAAAAGTTAAGCATTTTCATTTGCTCAGAGCAAATTAAACTCTTCCTTGCTTCGCTCTCTTTGTATTGTTCAACATGCCTCAGCCATTGTTTCTGATTTTACTTTTATGTACATTGTTCTCAAGTGGTTTATCCCAAACGGTTTCCCTCCAAAGAGAGTCTCGAATTTTACTTCGGGTTAAGAACACCCAGCTTGAAGACAAAAACAAGAGTCTCCAAGACTGGGTAGCCAAACACAGACCACAACCCCTGCAACTGGACCGGCATTACCTGCGACGCACAAAACCAATCACTTGTCTCCATTGACCTCTCAGAAGTTGGAATCTACGGTGAGTTCCCCTTCGGTTTTTGTCGCATTCACACCCTCCAAAACCTCTCTCTCGCATTCAATTTTCTCTCCAATTCTGTCTCCCCCAACTCCCTGCTCCTCTGTTCCCACCTCCGTCTCTTGAACCTCTCCGACAATTTATTCGTTGGAGACCTGCCGGAATTCACGCCGGAGTTCACCGAACTACGGGTGTTAGACCTTTCGAAAAACAACTTCACTGGCAACATTCCGGGGAGTTTTGGACAGATTCCACGTCTGAGTGTGCTAGTTTTATGCGGAAACCTTCTGAGCGGAACGATCCCTCCCTCTTTAGGCAATCTCACTGAGTTAACTCGTTTGGAACTAGCTTATAACCCCTTCAGACCAGGACCGTTGCCTCCCCAACTAGGAAACCTAATTAGTCTTGAAACACTGTTCCTCGCTGCTGTTAACCTCGTAGGGGAAATTCCACTCACTATCGGTAACCTCACCTCGCTCAAAAACTTGGACTTATCAAAAAATGGTTTGTCTGGTAATATCCCAAACAGCATTTCAGGTCTGAAAAACGTTGAACAGATTGAACTATTTGAAAACCAGCTTTCCGGTGAATTACCCCAAGGTTTAGGAAACCTCAGTAGTTTAATTCTCTTGGACCTCTCTCAGAACGCTCTGACCGGGGAACTACCACATGCAATCGCCTCTTTGCGTCTGTATTCTCTCAACCTAAATGACAACCTTCTCGGGGGGGAAATTCCTGAAAGTTTAGCTTCAAATCCCAACCTGCATCAGCTGAAACTCTTCAACAACAGCTTCACCGGGAAACTTCCACAAGATCTGGGACAAAACTCAGACATACAGGAATTCGATGTCTCGACGAATGACTTCGTGGGAGAGTTGCCAAAGTACCTCTGCAAAAGAAACAAACTCGAGCGTCTTATCACGTTCGCGAATCGCTTCTCAGGAACGCTCCCTGAGCAATACGGGGAGTGTGATTCACTTCAGTATGTCAGAATCCAGAACAACCAGTTATCAGGCCAGGTGCCTCCAGCTTTTTGGGCCCTTACAGGACTTCAGTTTCTTGAAGTGTCCAACAACAGGTTTGAAGGTTCTGTCTCTGCTTCCATCTCTGCGGCATTCACCAAACTCATTTTGTCTGCTAACGATTTTTCTGGCAAATTCCCAACGCGAATCTGCCAACTCCCTCACCTTCTGGAGATTGACGTCAGCAAGAACCGCTTCACCGGTGAAGTTCCCACGTGCATAACTGGGTTGAAAAAGTTACAGAAACTTAAGATGCAAGAGAACATGTTCACTGGCGAAATACCCAGTAATGTGGCCCTCTGGAACGACATGACAGAGTTGAACCTGTCATTTAACCGATTTTCGGGTTCAATCCCGCGAGAACTTGGCAGTTTACACGATTTGACAAACCTTGATCTCGCCAGTAATTCTTTAACGGGGGAGATTCCGGTGGAGTTGACGAACCTCAGACTCAACCAGTTCAACGTCTCTGATAACAATCTTTACGGGGAGGTTCCTTCAGGTTTCAACCACCAAATGTACTTTTCCAGTCTAGAGGGAAACCCAGGTCTGTGCAGCGGCGTCATCAAAACCCTACCTCCTTGTTCAAAACGCAGGCCGTTTTCTCTGCTTGCGATTGTCGTTTTAGTTGCCTGCGCTTCGCTCCTTGTGGGGTCCATGTTGTGGTACCTGAAGAGCAAGACTCGCCGTAAATCCAAGCGCTCGTATTTGTCAACCGCGTTTCAGAGGGTTGGGTTCAATGAAGAAGAAATTATTTCAAACTTAACCCGGGAGAACGTGATTGGAGCAGGGAGTTCGGGTCGGGTCTATAGGGTGAAGCTGAAAACGGGGCACACGGTGGCAGTGAAGAAGCTGTTCGGCGGAGTACATAAGCCTGACACTGAATTGGTGTTCAGGGCGGAGATTGAGACGTTGGGTAGGATTCGGCATGCCAATATTGTGAAACTGTTGTTTTGTTGCAGTGATGATGAGTTTAGGGTATTGGTGTACGAGTACATGGAGAACGGGAGCTTAGGGGATGTGTTGCATGGTGAGGAAATGTGTGGGGAGTTGATGGAGTGGTCTAGAAGGTTCGCAATTGCGGTGGGTGCGGCTAAGGGGTTGGCTTATTTGCACCATGATTGTGTGCCGCCAATTGTTCACAGGGACGTGAAGAGTAATAACATTTTGCTGGACCACGAGTTTGTGCCAAGAGTTGCAGACTTTGGCCTCGCTAAGACATTGCAGCTTGAGACAACCCAGGATGCTGTTATGTCCAAGGTTGCTGGATCATATGGCTACATTGCTCCAGGTCAGTTTTATGTTGTTTTTCCCTATATGAACACAATCAATAGTGATGTTAGAGAGCGAATTTGCCAAGAAATGAGATCATTAACAAAGACATGGGCCAATTGAAATAATTTTTTTAGTAATGTGAAATCAAACATTTGATCATATACCTTAAACTAAGTTCACTGATACTTTAATATGATTGAAAGGGGTTTGAATGTGAGTAATTCCTAATATAGCTGTACGAATTTGATATTTTGTAGAGTATGCTTATACAATGAAAGTGAACGAGAAGAGCGATGTGTATAGTTTTGGGGTTGTGCTGATGGAATTGGTCACCGGGAAGAGGCCAAATGACTCTTCATTTGGTGAGAACAAGGATGTAGTGAAATGGATGACTGAGATTGTTTTATCAACGTCCTCTGAAAGAGGAAGTGGCAATGTGGGAAGAGGTAAAGAGTATATTATGACCAAGATTGTGGACCCAAGATTGAACCGAAGCACTTGTGACTATGAAGAGGTTGAGAAGGTTTTAAATGTGGCCCTACTCTGCACCTCAGCATTTCCCATTAATAGACCTTCCATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGCCATGA