Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34658 LG10 13082689 13083309 PREDICTED: probable transcriptional regulator RABBIT EARS
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 13082783 missense_variant p.Gly32Val
T/C 13082821 missense_variant p.Cys45Arg
G/A 13082822 missense_variant p.Cys45Tyr
C/T 13082836 missense_variant p.Arg50Cys
G/A 13082842 missense_variant p.Ala52Thr
C/T 13082844 synonymous_variant p.Ala52Ala
G/A 13082855 missense_variant p.Gly56Asp
G/A 13082858 missense_variant p.Gly57Asp
C/G 13082859 synonymous_variant p.Gly57Gly
C/T 13082862 synonymous_variant p.His58His
C/T 13082868 synonymous_variant p.Asn60Asn
C/T 13082875 missense_variant p.Arg63Cys
C/G,T 13082878 missense_variant p.Arg64Gly
G/T 13082879 missense_variant p.Arg64Leu
C/T 13082883 synonymous_variant p.Asp65Asp
C/T 13082884 missense_variant p.Arg66Cys
G/T 13082885 missense_variant p.Arg66Leu
C/T 13082902 missense_variant p.His72Tyr
A/C 13082903 missense_variant p.His72Pro
T/A 13082910 synonymous_variant p.Pro74Pro
C/T 13082916 synonymous_variant p.Ser76Ser
G/A 13082920 missense_variant p.Ala78Thr
T/C 13082924 missense_variant p.Ile79Thr
C/T 13082937 synonymous_variant p.Pro83Pro
C/T 13082973 synonymous_variant p.Asp95Asp
C/T 13082987 missense_variant p.Ala100Val
C/T 13083001 missense_variant p.Leu105Phe
A/G 13083005 missense_variant p.Tyr106Cys
C/T 13083006 synonymous_variant p.Tyr106Tyr
C/G 13083009 missense_variant p.His107Gln
C/T 13083014 missense_variant p.Pro109Leu
A/G 13083015 synonymous_variant p.Pro109Pro
G/A 13083020 missense_variant p.Ser111Asn
C/A 13083021 missense_variant p.Ser111Arg
C/A 13083022 missense_variant p.Pro112Thr
A/G 13083025 missense_variant p.Ser113Gly
C/T 13083036 synonymous_variant p.Pro116Pro
T/C 13083042 synonymous_variant p.Ser118Ser
T/G 13083045 missense_variant p.Asn119Lys
C/T,G 13083053 missense_variant p.Ser122Cys
C/T 13083056 missense_variant p.Thr123Ile
A/G 13083061 missense_variant p.Thr125Ala
T/C,G 13083063 synonymous_variant p.Thr125Thr
C/A 13083082 missense_variant p.Pro132Thr
C/A 13083119 missense_variant p.Thr144Asn
C/A 13083127 missense_variant p.Leu147Met
C/T 13083133 stop_gained p.Gln149*
C/A 13083137 missense_variant p.Thr150Asn
C/T 13083140 missense_variant p.Ser151Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34658.1
MWNPSQQLHHQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLNQHPPSSTAISSLPTSSPYINIPPQDLVANAGLCLLYHLPPSPSAPPFSNSPSTNTLSSSPSPSTLLSISSYPSTNFLMQTSFNFPGAPSTGINTATVSSFYSSKVEQSATSSSFAAGHLEELDLELRLGHKPTQTS*


CDS Sequence:
>Vu_34658.1
ATGTGGAACCCTAGCCAGCAACTGCACCACCAAGAAGACGACGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCACGCTCCTACACCTGCACATACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCAACCAACACCCTCCTTCCTCCACCGCCATCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGGTTATGCCTCCTCTACCACTTGCCACCAAGCCCTAGTGCACCACCCTTCTCTAATTCCCCCTCTACCAATACTCTTTCTTCTTCTCCCTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTTCAACCAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCTCGACTGGGATCAACACTGCTACTGTTTCCTCTTTCTACTCCAGCAAAGTGGAACAATCGGCAACTTCTTCCTCTTTTGCTGCCGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGCCACAAACCAACACAAACCTCATAA


Promoter Sequence:
>Vu_34658::LG10:13080689-13082689(+)
AGGCGAAGAAAGCTATGTCTTCTCTTCAGGAAATGTTAACTTCTTCATCAATTGTCCCATATGTGTCTGGTGCCGTAATTTGTTAATTACTGCACTTTTGATTTTAATCCTTAGAGGTTTTTCTGCTGGGGTTGCGTGTTAACAAGGAAGAACCTACAAAAGAGAGCATTAGTGTTGCTCTTTGATTATTTTATAAAATTATTCATTTACTTGATTCCTCCATATACAAAGACAACCAGACAAAAAAGTTCCCTGTCTTTTAAATATCAGTATTTTGTAATTCGCAGTTTTCTTTATTAAATAAGAAACCGAACAAGAGAATTGTACATTGGTAATTTTTTAGTCTCATTTTCATATTCTCCGATCATAGTCATCATAATATGTTTCTTAATTATTTTAAAGCTGTCAAGTATGACTTCTGCGTTGTGTCTCACAGCACAGCATAGCAAAACTTTCATGCAGACACAGTACCAGTACACTGCATGCATAAGTAAAAATAAATAAAATTCAAGATTTATTAAAGTAATAATAAATAATAAAATTTCAATATTAGATCATATCTCAGATTTCACAGCATATAGTGAACATACATAGCATGAATTAAGGGACTGTGATGGTTGTTGATCTAACACCAACTGTGATATTGGAAGTGGGAAAAGCCGATACCTCTGAACACTAACGTTTTCACTCAGAAGGTATATCTTCTCCAATATGATGTGATTCAAAATCATGACGATTTTGATTACTTTTACATAAAAGATTGGTTAAGATCGTAAACTAACAAATTCTCCTGAAAAGGAGAGAGCTACAACTACATCAGCAAAATCTTATACATGTCAGAGCGATGAAAAAGTTGGGTTTATGCGTCTTTTTGAATGCAGAATATAAATATTTTGTGAGATTTGGGTGGAATGTCTCAGTTGCTGTTTGGGATTTCACTGTGTGTTGTCCAATATGCAATCTTAACATTTTCTGGTTTACCATGTAACTAAAAGTATTTTCTTGATAAATTTGTTTATTGATTGAGTTGTTTTTTAATATGCTGTGTTACTAATTTATTAATTTGTATACGACTGATAAAAGATCAAAGGCTTTTTATTCTAATTCGTGAGATTTATTAGAAGTTTTCAACCTAATCAAATCATTAAGGCGAAGTAATGAAAGCAAAATTACGTAGTTATGGCTATATGTTATTTGCTTCACTTAGTGTATACATGTTTGGAATTTTATTGAGTATGTGCGACTAAGGAATAAAGCTATTTGCGACACTTTGATGTTGGAAGACTCACATTCTTGAAATGACGTTGTTAAAATCAATGTAAAGAATGTGACAGTGACAGTAACGTATCATTAATTAAAAGCATTTTTTTATAAGTATTTTTGAACGGTTATATAGTTTGGTTTATAATTCAAATTTTAAAGTTCTTAAGAAATTATGACTGGTTATATTATTATTTCTTTAAAATGTTATTGGTTTGGGTGGCAGTTTAATTTGTTTGTAATATCCCTTTGATTTGAGAAATGTAAGAATTTGAAGTTATTCGGAGATACAGCGTGAGATATTTATGTGGCGTAGAAGCCAAAGGAACAGAAATTGTCCATAGCAAAGGTAAAAACCAGTTGTGTGGACAATAATAAATTAATCTACTACTACAATGTCAATCTCACTATGTTCCAACTGCTTACTTCAAACATTGGTGATACATTCGATTTGATGTTTTAAAGCTTAGTTTTGTCTTGACCCAGCTGTTTAATTACCCCCATTCCCCTATTTAACCAAATTAATCTGTTTTTAATTTTGCTCAAATTTCATCCCCATCTCCCTTCTATCTATCTCTTTATCTTTCTATCTATCTTAAATGTCAGTGACTGTACCATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAAATTATCACAATCCCAACACCCCAAAAAACAACAACCTCAACCAAACCCTAACATCACAACCACCACCCCCTCCTCTTGGA


Gene Sequence:
>Vu_34658(+)
ATGTGGAACCCTAGCCAGCAACTGCACCACCAAGAAGACGACGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCACGCTCCTACACCTGCACATACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCAACCAACACCCTCCTTCCTCCACCGCCATCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGGTTATGCCTCCTCTACCACTTGCCACCAAGCCCTAGTGCACCACCCTTCTCTAATTCCCCCTCTACCAATACTCTTTCTTCTTCTCCCTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTTCAACCAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCTCGACTGGGATCAACACTGCTACTGTTTCCTCTTTCTACTCCAGCAAAGTGGAACAATCGGCAACTTCTTCCTCTTTTGCTGCCGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGCCACAAACCAACACAAACCTCATAA