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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34614 LG10 12651967 12653930 PREDICTED: probable receptor-like protein kinase At5g47070
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 12651999 synonymous_variant p.Lys11Lys
C/T 12652568 downstream_gene_variant
G/T 12652571 downstream_gene_variant
G/T 12652605 downstream_gene_variant
G/T 12652634 downstream_gene_variant
A/T 12652661 downstream_gene_variant
T/A 12652674 downstream_gene_variant
T/A 12652756 downstream_gene_variant
C/A 12652943 missense_variant p.Leu150Ile
A/T 12653858 synonymous_variant p.Ser343Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34614.1
MNCLFFKKKSKSHPELPKGRKKKSQVVNGAPKSPSSVPSPRSIKELYREKEQSYRIFSLKELIDATNGFNSMLKIGEGGFGKVYRGTISPKDGPSPIGHKEWLAEVQFLSVANHPNLVKLLGYCSIDSKRGIQRLLVYEFMSNRSLEDHLFSVSLPPLPWPTRLQIMLGAAQGLYYLHNGLEIQVIYRDFKSSNVLLDKQFHPKLSDFGLAREGPTGDKTHVSTAVVGTQGYAAPEYVQTGHLKVQSDIWSFGVVLYEILTGRRALNRNRPIGEQKLVEWVKHYPANSSRFSTIIDRRLNNQYSLAAARKVANLADCCLKKNPEDRPSMSQIVETLNQALQDSQTQNTSPNNTPISTPSRLVSTPK*


CDS Sequence:
>Vu_34614.1
ATGAACTGTTTGTTCTTCAAAAAGAAATCAAAATCCCACCCAGAACTCCCAAAGGGACGGAAGAAGAAAAGCCAGGTTGTGAATGGAGCACCGAAGTCCCCAAGCTCGGTACCATCGCCAAGGAGCATAAAAGAATTGTACAGAGAGAAGGAACAGAGTTACAGAATTTTCAGTTTAAAAGAGCTTATAGATGCAACAAATGGTTTCAATAGCATGCTGAAGATTGGAGAAGGTGGTTTTGGAAAAGTATATAGAGGAACCATCAGTCCTAAAGATGGACCTTCTCCAATTGGACACAAAGAATGGCTTGCAGAAGTTCAATTTCTGAGCGTTGCTAACCACCCTAATTTGGTTAAGCTTCTGGGATACTGCTCAATAGACAGTAAAAGAGGAATCCAACGGTTGTTGGTGTATGAGTTCATGTCTAACAGGAGTCTGGAAGATCATCTTTTCAGTGTTTCTTTACCTCCTTTGCCTTGGCCAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGTATTATCTCCACAACGGATTGGAGATTCAGGTGATCTACCGCGATTTCAAATCTTCAAACGTGTTGCTGGACAAGCAATTTCATCCCAAACTTTCAGATTTTGGTCTTGCAAGAGAGGGTCCGACAGGTGACAAGACTCATGTATCTACTGCGGTAGTGGGGACACAGGGATATGCTGCCCCAGAGTACGTTCAGACGGGTCATCTGAAAGTTCAGAGTGATATTTGGAGTTTTGGTGTGGTGCTTTATGAGATCCTCACAGGGAGACGTGCATTGAATAGAAACCGTCCAATAGGAGAACAAAAGCTTGTAGAATGGGTTAAACATTACCCTGCCAACAGTAGCAGGTTCAGCACCATCATCGACCGACGTCTCAATAACCAATACTCTCTTGCTGCAGCTCGGAAAGTAGCCAACTTGGCAGATTGCTGCTTGAAGAAGAATCCTGAAGACAGACCCTCCATGAGTCAGATAGTGGAAACCTTGAACCAAGCATTGCAGGATTCACAAACCCAAAACACTTCACCTAATAACACTCCTATATCCACACCATCCAGATTGGTCTCAACTCCTAAATAA


Promoter Sequence:
>Vu_34614::LG10:12649967-12651967(+)
TATGCTTTTAGTCCCTCAACTATTAACCAATTTTATTTTCTTCCCATTTTAAACTTTGATCTTTGTCTTTAAAGAAACTATAATTTTTCGTTCTCCAAAACAAATGCAGTTAAAATTAGGCTGAATTAACTAACGGTATGCCACATTATTTTTTTTTTTTTTACATTAAGCCAATCTTTCCTACTTCTCTCCTTCCGTCTCCTTTCTTTTTGGCTATGGTTATATCATAATTTGTGGTGGTGGACAAGGAGGGAGTTGTGCGGCTGCGACGTCGACAGGAGGTTTAGTGAACAAGAAGAGTGGAAGAAGTTCGGCGTCAGATGCAAGGAAGGAGATGGAGGGAGAGAAGCAAGGAAATATTGACTTAGCGTTAAAAAAGAAAAAAATGATGTGGCACACCGTTAGCCAACTCAGCCTAATTTTAACACCGCTGATTTTGGAAGACGAAAATTTATAGTTTCCTTACTAATGAGGATCAAAGTGTACCAAAGTTTAAAAGAGGGACGAAAAATAAAATAGCTTAATAGTTGAACGACTAAAAATATTTAACCCTTAATAATATCATATTTACATGAGTTATGAATGATGACCTATTATTTTTTTGTTAACTTTTTATGTGAATGATTAATAGACATTTTTTGTGATTTTTTTATGTGAATGATTAATAGACATTGCCGTAAAAAAATCAAATTAAATAAAAATTATAAAAATTATAAAAATTAGAATTAATTTAAATATAAAAAAAATAAAAATCACTTTAAATAAAATTGATGAAAACAAAAACAAAACATTAAACCTTACTAAAATAACATTATTATGAGAGAACCCTGTTAACGATTTAACATCTACTTGATAAAAAGATAAAAGTATTTAATTATGAAGTTCAGATAGTTAATGGAAGGTTGAAAATAAAATGAATGAAAAAGCAAGAAAAGTGTTAGCAAATAAAGTAAAAAATAGTAAAATTTGAAAGAAAGGAAGAGAGGAAGAAATAAGTAAGAATGAAGAATGTGGAACCCCATGTTTGAACTTGGAAGCTCCAACGTTGTTCATAATGATATACTAATTTTTATTGTTTATTAGTTCGCTGGTTGTTGAAGACGCCACAGTCTCTTCCAACTTTGAAAGTCTTAGTACAGTCAATTCAACTCTTCTCATAAAATAATAATAATAATAATTATTATTATTATATAAACGTGTACCCACTTCACCTTCTAAGTCTCCACTCCTATCTTTATCATTATCATTACTTTTTTCACTTCTTTCTAAATTCAGACTAATGAAACTCATTTTCTCTTTTCCTATCTTTCACTCAAAGTTCACCGATGTAGCTTTAGTTTTACCATGCTTTTTGTTTTATATTGTTGGTTTTCTACACAGATTCCTTAAAATAAAGGAACAACTACCTTTTGGCTAATAAAATCTCTAATGTTTCATTCATTCATTCACACATCCTTATCATCACCAAATCTAAAAGTTTATTTTGTTTTTTGTGTTTTAAGAGGTTTAACTTTGTTGGTGTATAATTTGTTTATCTTTACTACAAATTTAATAATTCATCTTTAACAGAAGTTTTTTTTTTTTCTTTTTATCTTTTCATCACTCTTCAAAACGTAAATTTTAAACAATCTTTGACTGAAAATATACTCCGAATAAAATTGCAATCAACTTTGTTTTACTTTGACCCTGAATCGGACTATAGATGTCCCATAACATAACCATCAAATCAAACATAACCTTTTAACTGTTAATGTTATGTTTCTGTGTATCAGACGCGGATTTTCACGCGGTTTTCCTCTCAATTCCCTTCTTCTTATTGTTCAATTTCCTCTGCTACACGGAACAAACCCGTTTCAATTTTTTCTCTTTCTCCGTTTCATTCGTTTTCGCATTTTTCAAACATAATTTGCTTCACCTGTTTTCATTTTCTCTTGAACGAACCCTCTGTCTTTCTATACTCTGTTCTGCTGAGAATTTTAGTAACTTGGATGATTAGAAAA


Gene Sequence:
>Vu_34614(+)
ATGAACTGTTTGTTCTTCAAAAAGAAATCAAAATCCCACCCAGAACTCCCAAAGGGACGGAAGAAGAAAAGCCAGGTTGTGAATGGAGCACCGAAGTCCCCAAGCTCGGTACCATCGCCAAGGAGCATAAAAGAATTGTACAGAGAGAAGGAACAGAGTTACAGAATTTTCAGTTTAAAAGAGCTTATAGATGCAACAAATGGTTTCAATAGCATGCTGAAGATTGGAGAAGGTGGTTTTGGAAAAGTATATAGAGGAACCATCAGTCCTAAAGATGGACCTTCTCCAATTGTAGTCGCAATAAAAAAACTTAACGCGCATGGCTTACAGGTATATATATATATATATACACAAACACACCCTTCTTCAGTACCTTTGTTTTTCAATTCTCAATCTAAAAAATCTGTGGTTTTTATGACTAATATCTGCTCCGGTGACTCTATGTCCCTTCTTTTTGTTTATATTAGAATTATTGAAAGATAATGGACTATAGCAAGCGTGATACAATGTATACAAGATACAACGATTTTAATCGGTGTAGGTGGTTCTTTTACGAAAATCATTTATGTGAAAGGCAAATTCAGATTCTGAAAAACCTAAACGAGAAAACTTCTATTAATCATGGATGAGTTGATTTTGATGTGAGGAAAAACTTCTTTTCATGGCTGTTAGGAACTGCTTTCAATGGAAAACGAGTTTGCAGAGTGTCAGTCAAATGTGTTATGCTGTCTCTGAATTGTGTCAACACTTGAGTACTATAAAGATATACTTGGTTTGGTTTCTCATGTTTGTGTTATTTTTTATATTGTATTCTGTAAAGGGACACAAAGAATGGCTTGCAGAAGTTCAATTTCTGAGCGTTGCTAACCACCCTAATTTGGTTAAGCTTCTGGGATACTGCTCAATAGACAGTAAAAGAGGAATCCAACGGTTGTTGGTGTATGAGTTCATGTCTAACAGGAGTCTGGAAGATCATCTTTTCAGTGTTTCTTTACCTCCTTTGCCTTGGCCAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGTATTATCTCCACAACGGATTGGAGATTCAGGTACATTGTAGTTGAGACATGTTTCACATTTGTAACCTTGTCTGAATTGAACATCGTAGGTGTTCTAATTGATTATAATAATCTTGTCTTGTTTTAATGTTTTGTATTGGAAGGTGATCTACCGCGATTTCAAATCTTCAAACGTGTTGCTGGACAAGCAATTTCATCCCAAACTTTCAGATTTTGGTCTTGCAAGAGAGGGTCCGACAGGTGACAAGACTCATGTATCTACTGCGGTAAGTTGAACTCCTATAGTTTTTCATCGGTATTCAATCATGATTACTTCCAAAAATAAATCTGAACTATGAGACTTCCAAACCCATCCATCGTTTGCAATGAAAATGTAATCATAATTACTTATCATATATGCAAATATCAGTAACTATAACAGATTCTGGAGTTGGCAATTAAGCAGCACTGAATAGAAACCAGACTGATGATTCTGAAAACTTATCAGGTAGTGGGGACACAGGGATATGCTGCCCCAGAGTACGTTCAGACGGGTCATCTGAAAGTTCAGAGTGATATTTGGAGTTTTGGTGTGGTGCTTTATGAGATCCTCACAGGGAGACGTGCATTGAATAGAAACCGTCCAATAGGAGAACAAAAGCTTGTAGAATGGGTTAAACATTACCCTGCCAACAGTAGCAGGTTCAGCACCATCATCGACCGACGTCTCAATAACCAATACTCTCTTGCTGCAGCTCGGAAAGTAGCCAACTTGGCAGATTGCTGCTTGAAGAAGAATCCTGAAGACAGACCCTCCATGAGTCAGATAGTGGAAACCTTGAACCAAGCATTGCAGGATTCACAAACCCAAAACACTTCACCTAATAACACTCCTATATCCACACCATCCAGATTGGTCTCAACTCCTAAATAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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