Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34572 LG10 12321227 12322039 PREDICTED: ethylene-responsive transcription factor 2-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/G 12321349 synonymous_variant p.Ser41Ser
C/A 12321350 missense_variant p.Leu42Ile
A/T 12321377 missense_variant p.Arg51Trp
G/A 12321382 synonymous_variant p.Leu52Leu
G/T 12321407 stop_gained p.Gly61*
C/T 12321421 synonymous_variant p.Leu65Leu
C/T 12321466 synonymous_variant p.Arg80Arg
G/T 12321479 missense_variant p.Val85Leu
G/T 12321487 missense_variant p.Trp87Cys
A/G 12321536 missense_variant p.Ile104Val
A/G 12321547 synonymous_variant p.Val107Val
T/G 12321593 missense_variant p.Phe123Val
C/A 12321613 missense_variant p.His129Gln
A/G 12321615 missense_variant p.Lys130Arg
G/A 12321625 synonymous_variant p.Pro133Pro
A/G 12321628 synonymous_variant p.Ala134Ala
G/A 12321667 synonymous_variant p.Arg147Arg
A/G 12321676 synonymous_variant p.Pro150Pro
G/C 12321691 synonymous_variant p.Ala155Ala
G/T 12321692 missense_variant p.Ala156Ser
G/A 12321697 synonymous_variant p.Glu157Glu
A/C 12321784 synonymous_variant p.Ala186Ala
G/C 12321802 synonymous_variant p.Gly192Gly
G/A 12321841 synonymous_variant p.Ser205Ser
T/C 12321844 synonymous_variant p.Gly206Gly
C/T 12321848 missense_variant p.Pro208Ser
G/T 12321856 synonymous_variant p.Pro210Pro
A/G 12321863 missense_variant p.Ile213Val
A/G 12321865 missense_variant p.Ile213Met
A/T 12321866 missense_variant p.Thr214Ser
G/A 12321880 synonymous_variant p.Ala218Ala
C/T 12321921 missense_variant p.Ala232Val
T/G 12321952 synonymous_variant p.Thr242Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34572.1
MYEETTYESDLALLDSIRRHLLGDSEDLKFGPPIVNSGNTSLYSRSSSFGRLYPCLSNDWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLNADSPDSFSSGFIPEVTVKPEPDVFPAPEPVFTPPVVHKDAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRITSKRASPEPSSSSESGSSAKRRKKVVGSTVTAPSGLRTGQVGSQVAQCTRAEQLLVN*


CDS Sequence:
>Vu_34572.1
ATGTACGAAGAAACTACCTACGAGTCTGATTTGGCTCTTTTGGATTCCATTCGCCGCCACTTACTCGGGGACTCCGAGGATCTCAAATTCGGACCCCCGATTGTTAACTCGGGCAACACTTCCCTTTACTCTCGGAGCTCCAGTTTCGGTAGGTTGTACCCGTGTTTGAGTAACGACTGGGGAGAACTTCCTCTCAAGGAAGATGATTCGGAGGACATGGTGCTCTACGGTGTTCTTCGCGATGCCGTCAACGTAGGGTGGGTCCCTTCTCTCAACGCGGACTCACCGGACAGTTTTTCTTCGGGTTTCATCCCGGAAGTAACCGTGAAACCCGAACCGGATGTATTTCCGGCACCGGAACCTGTTTTCACTCCCCCGGTGGTTCACAAGGATGCACCGGCAGTTGTTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGGCAGCGGCCATGGGGAAAATTCGCGGCGGAGATCCGCGACCCGGCTAAAAACGGGGCTCGGGTTTGGCTCGGAACGTTTGAGACGGCTGAGGACGCCGCGCTGGCTTACGACCGAGCAGCGTACAGAATGCGCGGGTCTCGGGCTTTGTTGAATTTCCCGCTTCGGATTAATTCGGGTGAGCCCGAACCGGTTCGGATAACGTCGAAGCGAGCGTCGCCGGAGCCTTCGTCTTCGTCGGAGAGTGGATCGTCGGCTAAGAGGCGGAAGAAAGTGGTGGGGTCGACTGTGACGGCTCCAAGTGGATTGAGAACAGGGCAAGTGGGAAGTCAAGTGGCTCAGTGCACACGTGCGGAACAGTTGTTGGTTAACTAA


Promoter Sequence:
>Vu_34572::LG10:12319227-12321227(+)
AATTGAAACTTAATAAGGAAACACATGCTTATAATATTCACGATATCCTTTTATTGCCAGTTAAATTTAAAAAAAAAAAACTATTTTAGCTCCAATATAAAATCAATTTGAGGCCTCAACTGAATTTTAATGGAGTCCACCATGAACATCACTTAGTAAAAATTATGTTTATTTTTTAGTATAAAATATTAATTCATAGATATCATTATGAATCAATAAATATGTAAAATACATATGAATCTTTGTATTAATTTAAATTACCCATTCAATCGAATCCGTAAACTTTATATATTACATCAGTTATTTTATTAAGTATTCTTATAGTGGCGTGGTAGTTGTAGCAGCCACTAATCGAACATATGAACTAAGGAATAAAATTTCAAGATGATTTATGACTGACCGAGACGTATTTTAAACAGAGTAATTATTTATTTAATTACAAGATTAAAATATAAAAACACCCGACAACAAAATAAAAATTGTTTTGATAAAATTTTCGTCTAGTATTTTTTAAAAATGAAAATTTAAAATGAATTAAGCTTATCTCATAAGGTAAATTTATTTTATTTATAAGTTAAAACAAGCTTTTTAAGAAGTTAAACAATAAGAGTTTACAAAAATTAGAATGTAGAAACCAATCAGTTTAAATATATTTTTTCTCTCCAATCTTTTCAATGGTAAAAATTTCAAAATAAACAATTCATCAATACAATAATTCTAATTATGTTATCTAAACTTTATGGAAACAAAAAATTCTCTAATCCTAGACCTAATTAATTATCACAATATACCAATAGTTTTTCTGAGGAGTTGAATTAAGGAGCAGCAATATACCTTGTTTTTCTTCCATCGTTTGAGATTTGAGGAGTACAAATCCTGAAAAGGTTATAGACTCGAGACAATACTCCAGTGTGAATGTTGACATGGGATAAAATTAAAAGGAATTCATGAACTTAAGTAAAATTTAATACGGTAAAGATTAGTTTAATCTAATCCAAAGGCCATTATCTAATTAATGTAGAAAATAGAGTGGTAGCATCTTTTGATAAAGGGGATGGAAATGATGAAATGTGAAAAAGTGAGGGTTTGTGAATTGATGTTGTGTGATGAGCACCAGCTTCCTGGAAGCAACACTGATAAAAAAAAAGTGAAGTTACAGTGAGATGGAAAATTAAAGGAGGGTGGGGTCGTCTTTGGCAAGTAGACTAATTAATGGGGGGTTATTGACATTGCAAGAAACTTATATCCACCAATAACATCCTTTGCAATTTCAAACCTCACCAAACATGTCCATATCCACTGCATCATTTCCTCTTAGTCCACTTCCACTTTCCTTCTTTTCTGCTTCTACTTTTTCTCTTCCAAAATTACAACTTTTGCTTTTCATTTTCCTCTCTCAGTACAAACAAAATTAGGGTTTTCAATAATTTACACAAATTGTTATAAACATAAAGCTAAAAATATATTGTACAAGAGATTTAATTAATGCAGAAATGATAAGTTTGTGCGTGATTTTAGTGGCAGAAAGACGACAAAAACAGCAGAAACAGACAAGAAACAAGTTGTGTGGGCGTGCAAGTCGAATGACATCATGAGAAAATATTTTATTACGAAATATGGGGAATAATGCACGTGATAAATCTCAAGCAACTTGCACCTGAACCTTGCGATTCATACATGCGAACCTTCGGAGAAGCCAAGGGTGACAGCATTCGTAAATCTCAAAGAATTTAACTTAAACCCGAAACCGTACACCAATTGAAAATTAAAATATTTCTAAACGCCATTGATATTAAGCTGAAGTTTATCATCCAAGTTCATGTACCTTCCCTCTTATAAAGACCCTCATCTACTTTCTCTTTCAACTTCCAATATTCAATTCACAACCTAATACCATCCCTCAACAACACAATCCACGATCCTTCTCTCAACACAACACAAACGATAAAAAAACACAGATTGCCTGAGACACAGAAACAAAGACATTTCGGTTACAAAAA


Gene Sequence:
>Vu_34572(+)
ATGTACGAAGAAACTACCTACGAGTCTGATTTGGCTCTTTTGGATTCCATTCGCCGCCACTTACTCGGGGACTCCGAGGATCTCAAATTCGGACCCCCGATTGTTAACTCGGGCAACACTTCCCTTTACTCTCGGAGCTCCAGTTTCGGTAGGTTGTACCCGTGTTTGAGTAACGACTGGGGAGAACTTCCTCTCAAGGAAGATGATTCGGAGGACATGGTGCTCTACGGTGTTCTTCGCGATGCCGTCAACGTAGGGTGGGTCCCTTCTCTCAACGCGGACTCACCGGACAGTTTTTCTTCGGGTTTCATCCCGGAAGTAACCGTGAAACCCGAACCGGATGTATTTCCGGCACCGGAACCTGTTTTCACTCCCCCGGTGGTTCACAAGGATGCACCGGCAGTTGTTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGGCAGCGGCCATGGGGAAAATTCGCGGCGGAGATCCGCGACCCGGCTAAAAACGGGGCTCGGGTTTGGCTCGGAACGTTTGAGACGGCTGAGGACGCCGCGCTGGCTTACGACCGAGCAGCGTACAGAATGCGCGGGTCTCGGGCTTTGTTGAATTTCCCGCTTCGGATTAATTCGGGTGAGCCCGAACCGGTTCGGATAACGTCGAAGCGAGCGTCGCCGGAGCCTTCGTCTTCGTCGGAGAGTGGATCGTCGGCTAAGAGGCGGAAGAAAGTGGTGGGGTCGACTGTGACGGCTCCAAGTGGATTGAGAACAGGGCAAGTGGGAAGTCAAGTGGCTCAGTGCACACGTGCGGAACAGTTGTTGGTTAACTAA