Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34565 LG10 12270774 12272181 homeobox-leucine zipper protein HAT4
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/A 12271047 missense_variant p.Arg200Leu
G/A 12271052 synonymous_variant p.Ile198Ile
C/T 12271086 stop_gained p.Trp187*
A/G 12271163 downstream_gene_variant
T/C 12271216 splice_region_variant&synonymous_variant p.Ala178Ala
G/T 12271217 missense_variant p.Ala178Glu
T/A 12271279 synonymous_variant p.Ala157Ala
C/T 12271282 synonymous_variant p.Leu156Leu
A/C 12271334 downstream_gene_variant
A/T 12271338 downstream_gene_variant
A/T 12271345 downstream_gene_variant
A/T 12271351 downstream_gene_variant
T/C 12271360 downstream_gene_variant
G/A 12271375 downstream_gene_variant
T/C 12271506 missense_variant p.Arg121Gly
G/C 12271536 missense_variant p.Gln111Glu
A/G 12271560 missense_variant p.Trp103Arg
G/A 12271596 stop_gained p.Gln91*
A/T 12271797 downstream_gene_variant
A/T 12271867 downstream_gene_variant
G/C 12271923 downstream_gene_variant
G/T 12271934 downstream_gene_variant
A/C,T 12271935 downstream_gene_variant
C/A 12271971 downstream_gene_variant
A/G 12271977 downstream_gene_variant
G/A 12272001 downstream_gene_variant
G/A 12272009 splice_region_variant&intron_variant
A/G 12272026 synonymous_variant p.Pro52Pro
T/A 12272091 missense_variant p.Thr31Ser
C/T 12272102 missense_variant p.Ser27Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34565.1
MTAEKEDLGLSLSLSFPHNAPTPLHLSLLSTTSTYSSSPSSHNLHKPSWNDPFASSGEAGSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSEKRSEREANGEEEHDTDRGCFRGISDEEEGENCRKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAAVDTAARHRHVPQTHSRAFPIGPWATSAAPISHRPFDALRPRS*


CDS Sequence:
>Vu_34565.1
ATGACGGCTGAAAAGGAGGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAACGCTCCAACTCCTCTTCATCTCAGTCTTCTCTCCACTACTTCAACTTATTCTTCTTCTCCTTCAAGCCACAACCTTCACAAACCCTCTTGGAACGACCCTTTCGCTTCTTCAGGTGAAGCTGGATCGTTCCTCCGCGGAATCGATGTGAACCGGTTACCTTCTGCGGTTGATTGCGAAGAGGAAGCGGGTGTCTCGTCTCCAAACAGCACGGTTTCCAGCGTGAGCGAAAAGCGTAGCGAGAGGGAAGCCAATGGGGAAGAAGAGCACGACACAGACAGAGGTTGTTTCAGAGGCATCAGCGACGAAGAAGAAGGTGAAAATTGTAGAAAGAAACTTAGACTCTCCAAAGACCAATCCATTATTCTGGAAGAGAGTTTCAAAGAACACAGCACTCTTAACCCGAAACAAAAGTTGGCACTGGCGAAACAGTTGGGTCTTCGAGCAAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAACAAACGGAGGTGGACTGCGAGTTTTTGAAGAGGTGCTGCGAGAATCTGACGGAGGAGAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTCAGAGCATTGAAACTTTCCCCACAGTTTTACATGCACATGACTCCACCCACCACTCTCACCATGTGTCCCTCTTGTGAGCGTGTCGCTGTTCCCCCTTCCGCTGCCGTTGATACCGCCGCGCGTCACCGTCACGTGCCCCAGACCCACTCTCGGGCCTTCCCCATTGGCCCATGGGCCACCTCTGCCGCTCCTATTTCACACAGGCCCTTCGATGCGCTCCGTCCCAGATCTTGA


Promoter Sequence:
>Vu_34565::LG10:12272181-12274181(-)
CTATTAATGGCACGCGTGTAAAGAATCTATAATGCAAAACTTGCTGTCAAAACCAGCAAATTGCCCAGTATTCAAGATGCGAAGCTTTGTAGAATAAGTCTGTATCTTTGAATTTTTTTTTTTTGTCAGCAGATATTTTAAAATTAAAAAGAGAGAGAGTATAATCTAGTACGCTATTACATAAATTGAAAAAAAAGAAAAATTCTTATAAAAGAGCTAGAATTAGTTTAACTTTAAACAGGGTATCGATAAATTAATATGGATTTTTAAGAAAATTTTTAGGGTGAGGAGATGAGAAGAAGAACATATTTTGTGGTTGTGAAAGGAATTGAATCGATTCGTGGGAGGAAAGGTGGAATGGAAAGAAAAGAAAATAGAATAGAATAGAATAGGGAAAGATGGAAAGTTCCTACGTGGCGTGGTCCAGTGAAGAAGAAAATGGGTGAGTGGTGGTAAGTACTGAATAATGGAAAATGAAAAGGAAGGAGTTCAAATGATTGTGATGAGGAAGGTGTTGGTGCGTGAAGGGACAAAAGAGGGCGACACCCACGAATTTGTCCGAGAAGTGGGGCCAGCTGTGGAGGTGGAAGCGGTGGTTGGAGCACGTGTGATGGAGGAAGCCATGTTGGTCCACGTGAGTTGGGGCAGCTCAGGTTTTTGTTCCACACCTTCCTTCATTTTCGTAGACCCTCTTTCCCACGTGAACTCGACTCATCCCTGTCCCCCCTTCAAAATAATCACATCCATCACATGATACATTGCAACTGCATAACATAATGAAAGTAATAATAGGAATCGGGACCCACTCAGGGACATGGTAAATAATCAAAACCTTATTATCAATTTCCTTCTAATCATGGCCATCTGCTGTGTTTCTTGATTTCGACAACAGGTGATGGCGGTAAAGCGTAAAACAAAGGGCGACGATGGGGTCCCTACCGTCGACGTTTGACCTCAGCCGTTGATGTAGGGGAACTTCCATTTCATTCAGGTGCAACCTGCCCCACCTCGTTAAATGCTCAATAATATTTCTGATTAGACAGACATCAGAATGGAACAAATCCACTGCCTTTCATTGTGTTTTCTTGCTGGATTCACTCCTCAAGGAATAATAATACCTTTACCGTCTATTTTTCTCCCAGACACCTCTCTTTCTTCTTCATTCTCATCCTCTAAACTTCAACGCTTTCTCCTAACATTCAAATTTCAATTAACTGTGTTCCCACTTTCAAACTCGCATCAACGTACTCAGCGTCAACCCTACCTATAATGCCTTTTTACTATTACTACACTCGATGTCAAATATTCATTTTTATAACTTCGATATTCTAAATTCGAACAACTTGCCTAAGCTGTCAAAAGTCAGAACTAAACCTTAAATTTGTTTTTTCAATTTCAGTTCCCACTTTACCACTGTTTTCTTTCTTAATAGTATTTAACATAGCTGATCAGGATTTAAGTTTCATCAGATTTGTATAATGAAAACAGATATAAATAGTATTTTAGTGTGGGAGATGTTTTCTTTTTTTGTTTGATAGTTGAAATACTTTGTACCTTTCAACAGTATTTCGTAAAATATAGAGCAGGCTGGGTTATACACGTTTAGATTATGGTGATGATAATAATATAAAAAGGAAGTGTTTATGTGGAACAGTAGCATCTATATTTGAAGTGCATGAAAGGTTGTGTGTAGGAAATGGTGAAAAGGCAAAGAAAGAGGTTAGAAATGGAGGTGGGAAATAATAAGGAGAGAGAATGGAAGTTGTATTATTTGTGGGGCAAAAGCCATGATTCAGATAATTGGAGCTTCCTGACATAAAGTCATGATTGAACTCTCCACTCCCACCCATTTTCCCTCCTTTCTATATAATCCCTCCACACACATCTCTTCTCCACTTCATACTCACCCATTAACTCTCTCACAATACCTCATTCATTTCACCCAATCTCTCACCAAAATCCAATTATCTTCTCTCACAAGGCTTATCACGTTATTTGAG


Gene Sequence:
>Vu_34565(-)
ATGACGGCTGAAAAGGAGGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAACGCTCCAACTCCTCTTCATCTCAGTCTTCTCTCCACTACTTCAACTTATTCTTCTTCTCCTTCAAGCCACAACCTTCACAAACCCTCTTGGAACGACCCTTTCGCTTCTTCAGGTGCGTATCATCCCATTCCCCAACCTTCGGTTCTCTGTCCCGTGTTTGTTTCCAGATCTGCTCCAATTTCCTCACACTCTTCCTTTTCTCTTTTACTTTAACCACGTAGTTTGCTTCTTTCTCAAAGAACAAAACACCTTAGCCCTATACTTTCTGACTTTTCTCCTTTTACATTTTCCACAACTTTTACTATTCTGCACTCCTTTTCACTTCTTTCCATGCTCGTTCAAAGCTTCCTAATTTTCCAAAACATCTCAACTTTCTTCTTTATCGATTTCTGTTTTTCCTAAACGGTGTTTCTTTTGGCATGCAGGTGAAGCTGGATCGTTCCTCCGCGGAATCGATGTGAACCGGTTACCTTCTGCGGTTGATTGCGAAGAGGAAGCGGGTGTCTCGTCTCCAAACAGCACGGTTTCCAGCGTGAGCGAAAAGCGTAGCGAGAGGGAAGCCAATGGGGAAGAAGAGCACGACACAGACAGAGGTTGTTTCAGAGGCATCAGCGACGAAGAAGAAGGTGAAAATTGTAGAAAGAAACTTAGACTCTCCAAAGACCAATCCATTATTCTGGAAGAGAGTTTCAAAGAACACAGCACTCTTAACCCGGTAAGTGACAAGGTTCCGATCAATTTCGTACATGCTATGTCCAATGTGTATGTTTGGTTTGTTTTTGTTTTTGTTTTTGTTTTTCTCTCTAACGTGAGTGCGTGTGTTGCGTGCAGAAACAAAAGTTGGCACTGGCGAAACAGTTGGGTCTTCGAGCAAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGTGGGTTCATTTCATTAATATTTGTTCGTGTTTTAGTTTGTGTTGTTGTGTGGTCTTTTTCACGACAAAAAATAAAGTAAATTAAATCGAAAACTAATTTCAGGACGAAGCTGAAACAAACGGAGGTGGACTGCGAGTTTTTGAAGAGGTGCTGCGAGAATCTGACGGAGGAGAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTCAGAGCATTGAAACTTTCCCCACAGTTTTACATGCACATGACTCCACCCACCACTCTCACCATGTGTCCCTCTTGTGAGCGTGTCGCTGTTCCCCCTTCCGCTGCCGTTGATACCGCCGCGCGTCACCGTCACGTGCCCCAGACCCACTCTCGGGCCTTCCCCATTGGCCCATGGGCCACCTCTGCCGCTCCTATTTCACACAGGCCCTTCGATGCGCTCCGTCCCAGATCTTGA