People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34544 LG10 12106730 12107614 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 12106751 synonymous_variant p.Ser288Ser
A/G 12106943 synonymous_variant p.Asp224Asp
G/C 12106968 missense_variant p.Thr216Ser
T/G 12107061 missense_variant p.Glu185Ala
C/G 12107104 missense_variant p.Asp171His
G/T 12107336 synonymous_variant p.Ala93Ala
G/T 12107337 missense_variant p.Ala93Asp
G/T 12107339 synonymous_variant p.Gly92Gly
T/A 12107444 missense_variant p.Glu57Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34544.1
MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQPLPQSINTFSSNSSSRQDIEEDPHNEQQQKALVNYALRENPKKCFRLADPEFDSGAVVQDRESETESKNPTRRRSKRPRRPANSQPKARPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNTHAAVDNNNPVEDEEERSPEEIKFRRVRRKHQCQSCQKTFRSSRALGSHRTICEGSGNDSKIFECPFCSKVFGSGQALGGHKRSHMVPSSSSTANDSTRLKESFIDLNFPAPPEEEDDLSVVSDAQFDD*


CDS Sequence:
>Vu_34544.1
ATGGAGCGCCACAAATGCAAGCTCTGTTCGAGAACATTCGCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACTCTTCCTCTTCCTCCCAAACCCCAACCTCTTCCTCAATCTATTAACACTTTCTCTTCCAATTCATCTTCACGTCAAGACATAGAAGAAGACCCTCATAATGAACAACAACAAAAGGCTCTCGTCAACTACGCCTTGCGAGAGAATCCCAAGAAATGTTTCAGGCTCGCAGATCCCGAGTTCGACTCCGGCGCCGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACCCGCCGACGATCCAAGCGCCCACGCAGGCCCGCCAATTCCCAACCCAAGGCCCGGCCCAAACTCAGCTTCATGGAGTCCCCCGAGCCCGTGAGCTCCGTCTCCGACACTTCCCCCGAAGAAGACGTGGCCATGTGTCTCATGATGCTGTCCAGAGACCGTTGGAGCAAGAACACCCACGCTGCTGTCGACAACAACAACCCCGTGGAAGACGAAGAAGAGAGATCACCGGAAGAGATCAAGTTCAGAAGAGTTCGCCGGAAGCACCAGTGCCAGAGTTGCCAGAAGACGTTTCGATCTTCGCGCGCATTGGGCAGTCACCGAACCATTTGCGAAGGTTCGGGCAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTATTTGGGTCTGGTCAAGCTCTGGGTGGCCACAAGAGATCTCACATGGTACCTTCTTCCTCCTCCACTGCCAATGATTCCACCCGTCTCAAAGAAAGCTTCATAGATCTCAACTTCCCTGCTCCACCGGAAGAAGAAGACGACCTCAGCGTTGTTTCAGATGCCCAATTTGATGACTGA


Promoter Sequence:
>Vu_34544::LG10:12107614-12109614(-)
TCCTTGAAGTAATTATTATTTTAAATTAAAATAATTACATTTATATTTTTAATATATATTTAATTATTTTATAAATTAAAATCATTATTTTACTATTGTATCCTTTTAATAACTATATTTTTAATTTTAAATAATTATTTATAATAAAGAACTGTTTAATAAAAAATATACAAATTATTTATTTTCATAATTATTTTTAATAAAAATTATTGTATAATTTAATAAAAAATAAAAAACACATGCGTCTTACACATATTGCACTAGTACTAAATAATAGTAATAGTTATGAAATTAGCTATTTTAATTTATTCCATTTCTTTTATTTTGATTTTTTTTCTAAATTTACTAAAAAATGTTTTTTTTTTATAGATATTCCAATGTCATTATCTGTATACATGTATTTTTTTTAATTATAGCTTTAAAATACATTTCATAAAAAATTTAAAGTGCGGATAAATGAAATTTTTGATATTCCGTTTTTAAGGTAAACCTTTGAAATTATATTTTGCCATGTATATAGACGTTGTTAAAAATATAAAAATTAGTAGTCTTTAATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCAAAATTTTAAAATATGTTTAGAAATCTCAAGCTTTTCGTGAACAAAATTATATCATCAACCGGTTAAATTTAAAATAATTGTTGTAAGAATTGATGAATGTAGCATGTTAAAAAAAGTGATTGAATGTTATTATAAAAAGTGTTTTTTTATGTAGATATTATATATAAGATATAAGGTAGAATTATAATATATAATAAGATATAAATATTGTTTTACATATTGATTATAGGATTAATTTAAGTTTAAAATCCACTTTATAAGTCTAATATAATAATGAGATTTATCGATTAGGTCTACCATGTCACCAATTTAAATGTGTTAATATTTTACATAGATTGTAAACAAAATAAACTTACCATATAAAGTGAATGTGAACTCATTTATAATTTGATTTTATACGATTTGTTTTTCAAAAGAACTACTCTACCACTTCAAATATTAGGATGCAATACATGGGTTGAAATTTAAGAAACTGGACCAAATTCCTCTAAGATGCAAATTAATTTTGATTTATTGTTTGTTGATATATATTTAAAAAAGTATGCCGAACTGATTTTGATAATTAGTGATCATTTATATCTAATCGGTGAAATATACAAAAAGGAAAAAGTTTCCATAAGCACAGTGATACAGTGTCCCAAGCACCAATTATAATAATATTTAGGATCACGATATATTAATAATTTTTTAACCATAGATTATGTATCATTATTTTTTTATTGATATATATATATATATATATATATATATATATATATATATATATTTGAAAGGGACTCATAATAATTAGTAGTAAAAAAGTTGTTAAAATTATATTTTTCTAATATTTATTATAATTTGGAACAGAATACCAACCATTTACAGAGAGTTGCATATCACACATAACCTATTTTTTCTGAAATTAATATATATGAATATATGTTTGATAACAGTTATGTGAATTTGTATTAGCAGCTAAAAAAACGTTCCTCTTGAGATTGAGAAACAGAAAGCAGTAAATGAAAAAAAAAAGTTATTCCATAGGGGCAAGGTTTGCATGTTCGCTGCTGCTCTTTTCACTGTTCACGATCACACTTTGTTAGTTTTTGCCACCGAATAATGAATGTCACTGTTGGAATTTGTTGTGTTGACGCTTCACAAATCACAGCTCATATAAATACGCAGTATATGTATGTATATATATATATATATAGGTGTATATAAATATTATTAATTGAATAATAATAGACACATATGCAGAAGCATAACTTTTGGGTCGTGTGTGTCCTATTGGTGGAAGAATGCTTGTTACCTACTCCTTTTTAAGTTCCCAAATACCCCAAAACCAAACCAAACCAAACCGAACGAAACGTATCTCTGAGAGCATTGAG


Gene Sequence:
>Vu_34544(-)
ATGGAGCGCCACAAATGCAAGCTCTGTTCGAGAACATTCGCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACTCTTCCTCTTCCTCCCAAACCCCAACCTCTTCCTCAATCTATTAACACTTTCTCTTCCAATTCATCTTCACGTCAAGACATAGAAGAAGACCCTCATAATGAACAACAACAAAAGGCTCTCGTCAACTACGCCTTGCGAGAGAATCCCAAGAAATGTTTCAGGCTCGCAGATCCCGAGTTCGACTCCGGCGCCGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACCCGCCGACGATCCAAGCGCCCACGCAGGCCCGCCAATTCCCAACCCAAGGCCCGGCCCAAACTCAGCTTCATGGAGTCCCCCGAGCCCGTGAGCTCCGTCTCCGACACTTCCCCCGAAGAAGACGTGGCCATGTGTCTCATGATGCTGTCCAGAGACCGTTGGAGCAAGAACACCCACGCTGCTGTCGACAACAACAACCCCGTGGAAGACGAAGAAGAGAGATCACCGGAAGAGATCAAGTTCAGAAGAGTTCGCCGGAAGCACCAGTGCCAGAGTTGCCAGAAGACGTTTCGATCTTCGCGCGCATTGGGCAGTCACCGAACCATTTGCGAAGGTTCGGGCAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTATTTGGGTCTGGTCAAGCTCTGGGTGGCCACAAGAGATCTCACATGGTACCTTCTTCCTCCTCCACTGCCAATGATTCCACCCGTCTCAAAGAAAGCTTCATAGATCTCAACTTCCCTGCTCCACCGGAAGAAGAAGACGACCTCAGCGTTGTTTCAGATGCCCAATTTGATGACTGA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322293