Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34513 LG10 11836306 11838401 PREDICTED: protein ODORANT1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of lignin biosynthetic process, regulation of lignin biosynthetic process, regulation of lignin biosynthetic process, L-phenylalanine biosynthetic process, L-phenylalanine biosynthetic process, positive regulation of transcription, DNA-templated, regulation of lignin biosynthetic process, positive regulation of transcription, DNA-templated, L-phenylalanine biosynthetic process, cell differentiation, regulation of secondary cell wall biogenesis, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of phenylpropanoid metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of phenylpropanoid metabolic process, regulation of secondary cell wall biogenesis, regulation of phenylpropanoid metabolic process, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 11836341 3_prime_UTR_variant
G/C 11836423 3_prime_UTR_variant
A/T 11836468 3_prime_UTR_variant
T/A 11836489 3_prime_UTR_variant
T/A 11836566 3_prime_UTR_variant
G/A 11836577 3_prime_UTR_variant
C/T 11836581 3_prime_UTR_variant
C/G 11836585 3_prime_UTR_variant
A/G 11836589 3_prime_UTR_variant
T/C 11836593 3_prime_UTR_variant
G/A 11837024 synonymous_variant p.Ser178Ser
T/A 11837663 intron_variant
A/C 11837715 intron_variant
C/T 11837730 intron_variant
T/C 11837933 intron_variant
G/C 11837939 intron_variant
T/C 11837948 intron_variant
A/G 11838265 5_prime_UTR_variant
A/C 11838336 5_prime_UTR_premature_start_codon_gain_variant
C/A 11838354 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34513.1
MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKEATSQNSSFPAEHLSQVDNINIHQVKENGMALNSEENSTSSPAENSSGEESLLMDSICSDVSLMNSMWLDETPLMDTLWDSTPNLENENLPMWEDNCPWLLDCQDFGIHDFDFNCSSEIESNALQTLDLDRKEL*


CDS Sequence:
>Vu_34513.1
ATGGGGAGGCAGCCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAGCTGATAAGCTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGTCTTCGCCGTTGTGGTAAGAGTTGTCGTCTTCGCTGGACTAATTATCTGAGGCCTGACTTGAAGAGAGGCCTCCTCACACAGGCAGAAGAACAGCTTGTCATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAGAATCACTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAACCTCTCAACAAAGAAGCCACATCACAGAATAGTTCTTTCCCTGCAGAGCATCTGTCACAAGTTGATAATATTAATATCCATCAGGTTAAGGAAAATGGTATGGCTCTCAACTCGGAAGAGAATTCCACCTCATCACCAGCTGAAAATTCTTCCGGGGAGGAATCCCTTTTGATGGATAGCATTTGCAGTGATGTGTCTTTGATGAACAGCATGTGGCTAGATGAAACTCCTCTTATGGACACGTTATGGGACAGTACGCCTAATTTAGAGAATGAAAACTTGCCAATGTGGGAGGACAATTGCCCTTGGTTGTTGGACTGCCAGGACTTTGGTATTCATGATTTTGATTTTAATTGTTCCAGCGAGATTGAATCAAATGCACTGCAAACTCTAGACTTGGACAGAAAAGAACTTTAG


Promoter Sequence:
>Vu_34513::LG10:11838401-11840401(-)
GTTGGAAATATACAATAAAATGAGTTTAAGTATTCTCATATTTTTCAGGAGGAAATAAGTTGACTTGTTTAAAATTAGAAAATAAAATTTGTTTTAAATGGTGTCATATTATATTATGTCATTGTTCTTAGATTTTTTTTTTCTTTGATTTGATTTGGAGTGTTTTTAGCTTTTTTTAAGGAAGATTACTATTTATTTTTTGTCCATGAGTATGTTTTTTGTTTTTATTTTTTATGAAATGTCAAATGATTTATGCGTTTGTCAATCTGGTTGAAATTTCATAATACATAATTATGTTTAACATGACATAAAAAAAACTAATTATAACTTTTGATAAATTTATTTTATGTTCGTAGAAATTCTTAGAGAAAAATTTCTTCATACATTATTAATAAATTATCCTACGTACTAAATGATACAAAAAATGTATTTTATTGTTACAACTAAAAAGGGAAAAATAACCTAGTTCTAGATTTATTTATTGCATATAATTTTTGTTTTAACTCAGATTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGACATGATTTCCAGTCACGTAAATATTTTGAAAATAAAAAATACGTGTCATATTGAACATTTAAAATAAATTTAGGATTAAAATAAAGTAACTATTATTTATTTATAAACAAAATGACGGTTTTAGTTTCTGAAAGTGTGTAATGGTGTGACTTTAATCTCTAGAAAAAGTAAAGTTATGACTAACTTCTGAATGTAAAAAAGTAATCAATTTGGTTTTCTCCTTATTACAGTTCCGTCAAGATTAATGTCTGTGTATACATAACATTATTAGATGTACTTAGATACGTTGCTTATACAAGTGGATATACCAAATTGTTCTTTAGTCAGAAAGACAAATTTAGATTTTGAAGCAAAGAAAAAGATGATATTTCTAAACATATACATACCCAAATTGTGTACCAGCGACAAATTGAGGATAACTTCTTTTCATCGTAATATGCTTCATCATCACTATTGGATACAGACCTCAAATTTTCTAAATTATAATGTCTCTGTCACTTGAATGTTATTTCTTATCAGTACAAACAAGAAAATGTTTTCCTTGTAAATGACTGGCAAAAGGTTAACCAGAAAGCATTTAATTTTTAATCCTTTGTTCCTTAAGTTGTTAAATATTCTTCAAAAGATACCAAAGTCGTGGCTTGTAGAATGGTTCTATACTTCGATTAGGCATATTCCTTTTGTCTCTACTCTCAAACTTTCCACAGTAGTACTGTGCATTGATGATAGGCTTGAGAAAAGGAAGTTGGGAATTATTGCTTTGTAGCATGGGAAAAATAGAAGAAAAACAAAATTGTGGCCCCGAAACACACCAGTTCATTGTCCATTCCTCAATAACAAAATTAAATATTCAAAAATCTCAGTGTGTTTTTTACATTAAAACTTTCAAACCAAGAGCAGTGAGTTGTCTCACACGCAGCATAGATGCTCGATGATTTTACTGCGTTATATCAGTCTCCTTCGACCACATCCAATAGCTACAATTTCATTTTCATCCCATCAAACGGTTATGTTGCACATGCGGACCAAACAATTGTAGCAATCATCCACACTCTATCACAATCTACCGCTAATGAGGACACGTAGACGTGGCGATGACGAAAAGGTTGAGTAAGAGTGCAATTAGGGAAGTGGATTTGCAAAGGAAAAATTGAAAAGGATCAATCGTTTTACACATTTTTTCCCTTTGGGATGCTTACATGTAGCTCTGCCTTTGGGTCACCAATTCTTGAGCATCACCCATTTTATGCAGTGAGAAAAAAACACCAGAACATCCCATATTGGTTCCCACATAGCTTTCACAACACCTAGGTGGGACCCGAAATACCCCCAGTTTTCTGTGTCCCTTATTTGAGTGTTGTTTGGGATGCATCTTTTCTATTTG


Gene Sequence:
>Vu_34513(-)
ATATAATACTCAAGTAGTAAAAGGAGAGAGCTTTATTAATATATAAAGGTGGGTGTGGGATTTTTTAGTCGTCTCAACAAGAAGCTAGTGTTGGTGACACTTTCCATTGGCTAGTTTGAAGGTTTGTATTGGTTAGTAGCAAGTGCTATGGGGAGGCAGCCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAGCTGATAAGCTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGTCTTCGCCGTTGTGGTAAGAGTTGTCGTCTTCGCTGGACTAATTATCTGAGGCCTGACTTGAAGAGAGGCCTCCTCACACAGGCAGAAGAACAGCTTGTCATTGATCTCCATGCCCGTCTTGGCAACAGGTTATTAATATTTCTTCTTTTTTCACTACCTCATCTTCAACCAACCACACTGCCTTCTATAAATTTCAACAATAAATATTATATGCTCCACTACCCTATCATCTCTACTGATATCCACGTAACACAGGTAACTACATTTTCAAAACGCCAAGAGGTATACTAATAACTTGTTGCTTTAGCTTGGTTTCTCCTTCAAACAAGTTTAAAGTCCTAGTCTTTACATGCATATATGTACAAGAAGGTACTTGCATTTGAAATCATGTTTTTAAAGCTGGATAACTTAAGCAAAGTGATTAAAGGTTTATTATTAGTATACAGACGTACAAGGAGGACACTGTAAAACTGCATGCGTGCGTGAAGTGTTTCTACAAGGTTACAAATTATTGTGTGTGATGTATTTATAATAATAGTTTATAGTTTATACTAAAAGTGCATAAAATTTAAAGTCATAAAAGCATGATAAATTGATAGCACGCAAAAGTCAATAAACTGAAGATGATTGTTGAGTAAAGAATAATGACGTATTCTTATAAGTTAGGAGATAATTCCTCACTTGAAGCTATCTATGCGGTTTGTTTGATATGGGTACTTACCTTTGGGACTAAGAAAGAGCCCTACAATGTTGGGACTTAACTTACGGAAGGGGTCATGAGTTTTGTTGGACATGCGAGTGATTGTTGTGGTTTGTCTGTCTCAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAGAATCACTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAACCTCTCAACAAAGAAGCCACATCACAGAATAGTTCTTTCCCTGCAGAGCATCTGTCACAAGTTGATAATATTAATATCCATCAGGTTAAGGAAAATGGTATGGCTCTCAACTCGGAAGAGAATTCCACCTCATCACCAGCTGAAAATTCTTCCGGGGAGGAATCCCTTTTGATGGATAGCATTTGCAGTGATGTGTCTTTGATGAACAGCATGTGGCTAGATGAAACTCCTCTTATGGACACGTTATGGGACAGTACGCCTAATTTAGAGAATGAAAACTTGCCAATGTGGGAGGACAATTGCCCTTGGTTGTTGGACTGCCAGGACTTTGGTATTCATGATTTTGATTTTAATTGTTCCAGCGAGATTGAATCAAATGCACTGCAAACTCTAGACTTGGACAGAAAAGAACTTTAGAATGCAGTCCATCTAGTAAAGTAAGTTATTCTTAAAATGGGAATAAATCCTCTGGTGTCCATGTCACGTTCAAATTTTGTGTTTATATCTTTCTTGATGAATGATAAGGTCTGCTTGATTATCTGTCAAGGATGTGATGCACAAAAGATTTGAACGTGAAACTCTTATGTTAAAGTTTGACACAAGAGGATTAAAAAAACACCATGGACTTAAACTTAGGTTCTTGGTGTTTAATTTTTATCTAGCTATTGTGTTGCATAGAACTCCTGGAAGGTGTACTGTACAAATGTTTTCTCTTATGAGGATAGTCACCAACCCAATCATACAAATGATTCCCAACATAATCCCCCAAATACCGCATTAAGTGGATTCATGTAAGTTGTAAATGATGTAATCTTTTGTGTATGGTAGGCACAAGAAAATGGAAGATGGCAAACAACTACTGGATTTTGTA