Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_34457	LG10	11362169	11363821	uncharacterized protein LOC106776602	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	11362465	missense_variant	p.Tyr453His
A/T	11362469	synonymous_variant	p.Pro451Pro
G/C	11362492	missense_variant	p.His444Asp
G/A	11362497	missense_variant	p.Ala442Val
G/A	11362527	missense_variant	p.Ala432Val
T/A	11362537	missense_variant	p.Asn429Tyr
G/T	11362556	missense_variant	p.Asn422Lys
T/A	11362558	missense_variant	p.Asn422Tyr
T/A	11362560	missense_variant	p.Asp421Val
C/T	11362561	missense_variant	p.Asp421Asn
T/C	11362564	missense_variant	p.Arg420Gly
C/G	11362565	missense_variant	p.Met419Ile
C/T	11362578	missense_variant	p.Arg415Lys
T/A	11362579	missense_variant	p.Arg415Trp
T/C	11362588	missense_variant	p.Asn412Asp
C/G	11362595	synonymous_variant	p.Leu409Leu
G/T	11362600	synonymous_variant	p.Arg408Arg
C/T	11362621	missense_variant	p.Gly401Arg
T/C,A	11362690	missense_variant	p.Asn378Tyr
C/G	11362719	missense_variant	p.Gly368Ala
T/C	11362721	synonymous_variant	p.Glu367Glu
C/T	11362731	missense_variant	p.Cys364Tyr
C/T	11362777	missense_variant	p.Val349Ile
C/T	11362808	synonymous_variant	p.Ala338Ala
A/T	11362827	missense_variant	p.Leu332Gln
G/A	11362831	synonymous_variant	p.Leu331Leu
T/C	11362843	missense_variant	p.Lys327Glu
C/G	11362872	missense_variant	p.Arg317Thr
T/C	11362873	missense_variant	p.Arg317Gly
T/G	11362900	missense_variant	p.Lys308Gln
G/T	11362918	synonymous_variant	p.Arg302Arg
T/G	11362921	missense_variant	p.Met301Leu
C/G	11362939	missense_variant	p.Glu295Gln
A/G	11362946	synonymous_variant	p.Val292Val
G/A	11362965	missense_variant	p.Pro286Leu
G/C	11362966	missense_variant	p.Pro286Ala
G/T	11362988	missense_variant	p.His278Gln
C/T	11362999	missense_variant	p.Glu275Lys
G/C	11363009	missense_variant	p.Phe271Leu
C/T	11363012	synonymous_variant	p.Gln270Gln
G/C	11363014	missense_variant	p.Gln270Glu
C/T	11363071	missense_variant	p.Asp251Asn
A/C	11363082	missense_variant	p.Val247Gly
C/T	11363107	missense_variant	p.Val239Ile
A/C	11363112	missense_variant	p.Val237Gly
T/C	11363120	synonymous_variant	p.Leu234Leu
G/T	11363142	missense_variant	p.Pro227Gln
G/C	11363143	missense_variant	p.Pro227Ala
G/T	11363144	missense_variant	p.Asn226Lys
G/A	11363148	missense_variant	p.Thr225Met
G/A	11363152	missense_variant	p.His224Tyr
T/A	11363163	missense_variant	p.Lys220Ile
T/A	11363164	stop_gained	p.Lys220*
C/G	11363167	missense_variant	p.Asp219His
A/C	11363173	missense_variant	p.Tyr217Asp
C/T	11363190	missense_variant	p.Arg211His
G/A	11363191	missense_variant	p.Arg211Cys
G/T	11363202	missense_variant	p.Pro207His
G/A	11363203	missense_variant	p.Pro207Ser
T/G	11363209	missense_variant	p.Lys205Gln
A/T	11363210	missense_variant	p.Phe204Leu
A/T	11363216	missense_variant	p.Asn202Lys
G/A	11363223	missense_variant	p.Thr200Ile
C/G,T	11363238	missense_variant	p.Ser195Thr
C/T	11363260	missense_variant	p.Glu188Lys
G/C	11363281	missense_variant	p.Leu181Val
G/A	11363295	missense_variant	p.Ser176Leu
C/T	11363300	synonymous_variant	p.Glu174Glu
G/A	11363304	missense_variant	p.Ala173Val
G/C	11363312	missense_variant	p.Asp170Glu
G/T,*	11363319	missense_variant	p.Thr168Lys
T/C	11363325	missense_variant	p.Lys166Arg
T/A	11363329	missense_variant	p.Ile165Phe
G/C	11363335	missense_variant	p.Arg163Gly
A/C	11363341	missense_variant	p.Trp161Gly
T/A	11363371	missense_variant	p.Arg151Trp
A/G	11363392	missense_variant	p.Phe144Leu
A/G	11363399	synonymous_variant	p.Leu141Leu
G/C	11363403	missense_variant	p.Ser140Cys
C/A	11363406	missense_variant	p.Arg139Leu
G/A	11363407	missense_variant	p.Arg139Cys
C/T	11363415	missense_variant	p.Gly136Asp
C/G	11363416	missense_variant	p.Gly136Arg
C/T	11363418	missense_variant	p.Arg135Lys
T/A	11363422	missense_variant	p.Ile134Leu
T/G	11363427	missense_variant	p.Asn132Thr
T/C	11363428	missense_variant	p.Asn132Asp
T/G	11363435	synonymous_variant	p.Gly129Gly
C/G	11363436	missense_variant	p.Gly129Ala
C/T	11363437	missense_variant	p.Gly129Arg
G/C	11363444	missense_variant	p.Ile126Met
C/G	11363449	missense_variant	p.Glu125Gln
T/C	11363454	missense_variant	p.Gln123Arg
G/C	11363455	missense_variant	p.Gln123Glu
C/A	11363473	missense_variant	p.Asp117Tyr
G/T	11363482	missense_variant	p.His114Asn
C/G	11363611	missense_variant	p.Asp71His
T/A	11363681	missense_variant	p.Lys47Asn
A/G	11363694	missense_variant	p.Leu43Ser
A/T,G	11363698	missense_variant	p.Trp42Arg
T/C	11363707	missense_variant	p.Lys39Glu
A/G	11363717	synonymous_variant	p.Asp35Asp
T/C	11363723	synonymous_variant	p.Ser33Ser
T/A	11363745	missense_variant	p.His26Leu
A/T,C	11363757	missense_variant	p.Met22Arg
T/C	11363759	synonymous_variant	p.Ser21Ser
C/T	11363762	synonymous_variant	p.Thr20Thr
A/T	11363784	missense_variant	p.Val13Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_34457.1

MSIRTNKMKAVGVLMKQLTTSMRKFHEKGRDESFDGELKKLWLVLNKIKDVFVEVKKNEEKLLDTLAEVHDHLRRLDRRKLHQDMHSICKSIKDSALALLPMLVFDDSNKEEDHRGDKISHSQHEISSGDFNSIRGYLRSLLIFPPNVVIRKRNAINLWIWERLIKNTEDKTAEESGEDVLANLLKLEVIVRYGSRKDPTVNKFKIPPQVRSQLKIYFDKDLEHTNPSRLLLELKKVTVDGVDKRNVNLVDIFNIGASYLNFRPQWVTDQFKNLEVLHLGRWQDSPLHHIEVGSEEFLREMRTLKQLKYLSLRGISRIFELPSSIAKLESLLILDLKACHNLERLPDDVSSMKSLTHLIMSECCLLEGMPKGIEKLTNLQVLKGFLISTSENTPCRISDLGNLKKLRRLSINIGREAMMRDNEFESLKNFSALKHLKISWSASHPRYAKFPIYLPADLRKLHLECFPGKSLRECFQIFKMIPPELHITGGKLEIIHDMGLLNVKILRLKYLKQLKVNIYNLGAFFVGLKYVEIIQISNHSYFEHFYDLNF*

CDS Sequence:
>Vu_34457.1

ATGTCAATTCGAACAAACAAAATGAAAGCCGTAGGTGTGTTGATGAAGCAATTGACAACGTCAATGAGGAAATTCCATGAAAAAGGAAGAGATGAATCATTTGATGGGGAATTGAAGAAGTTGTGGTTGGTTCTGAACAAAATAAAGGATGTGTTTGTGGAAGTGAAGAAGAATGAAGAAAAACTGCTGGACACATTAGCAGAGGTGCATGACCATCTTCGCAGGTTAGACCGTAGGAAGCTACATCAAGACATGCATAGCATTTGCAAGAGTATCAAAGATTCTGCTCTCGCTTTGCTCCCAATGCTTGTTTTTGATGACTCTAATAAGGAGGAGGATCACAGGGGTGACAAAATATCTCACTCGCAACATGAGATCAGTTCGGGAGATTTTAACTCAATAAGAGGTTACTTGCGTTCTCTTTTAATTTTCCCTCCAAATGTTGTGATAAGGAAAAGAAATGCAATTAATTTGTGGATTTGGGAGCGTTTGATTAAAAATACAGAGGACAAAACAGCAGAGGAATCGGGTGAGGATGTGCTTGCTAATCTTTTGAAACTTGAGGTGATTGTTCGCTATGGTAGTAGAAAGGATCCCACTGTCAATAAATTTAAAATTCCTCCTCAGGTCCGTAGTCAGTTGAAGATATATTTTGATAAAGATTTAGAGCATACGAACCCATCGCGATTACTGCTTGAATTAAAAAAAGTTACAGTAGATGGAGTTGATAAGAGAAATGTTAATTTAGTTGATATTTTTAATATTGGTGCAAGTTATCTGAATTTTAGACCGCAATGGGTCACCGATCAGTTCAAGAATTTAGAGGTGCTTCACCTAGGACGGTGGCAAGATTCACCTTTGCATCACATTGAAGTTGGGAGTGAAGAATTCTTGAGAGAGATGCGAACTCTGAAGCAGTTAAAATATTTGAGTTTGCGTGGGATATCAAGAATATTCGAGCTTCCATCCTCCATTGCTAAACTTGAGAGTCTACTAATTCTTGATCTGAAAGCGTGTCATAATTTGGAAAGACTGCCTGATGATGTTTCATCAATGAAAAGTCTAACACATCTGATTATGTCTGAGTGTTGCTTATTGGAAGGCATGCCAAAGGGGATTGAGAAGCTCACTAATCTCCAAGTACTCAAAGGATTTTTAATAAGCACTTCTGAAAACACTCCTTGCAGAATATCAGACCTTGGAAATTTGAAAAAACTAAGACGACTGAGCATAAATATAGGAAGGGAGGCCATGATGAGGGATAACGAGTTTGAAAGTTTGAAAAATTTTTCAGCACTTAAACATCTCAAAATATCTTGGAGTGCGTCTCACCCAAGGTATGCTAAATTTCCTATCTATTTGCCAGCAGACTTGAGAAAGTTGCATCTTGAATGTTTTCCTGGAAAAAGTTTGCGAGAATGTTTTCAAATTTTCAAAATGATACCACCTGAGCTACATATAACTGGAGGAAAACTAGAAATTATACATGACATGGGATTGCTGAATGTGAAAATTCTGCGTTTAAAGTACCTTAAACAATTGAAGGTTAACATATACAACTTGGGAGCATTTTTTGTTGGGCTGAAATATGTAGAAATTATACAAATTTCAAACCACTCATACTTTGAGCACTTCTATGACTTGAACTTCTAA

Promoter Sequence:
>Vu_34457::LG10:11363821-11365821(-)

CGACATTCGTTTTTCCTTAAACGGATGTTGACATCCATTGAAAGATGTCACTAAAGGTTACGTTTTTTATTTTAGGGTTTGTTTTATTAGTTTATTCTTTATTTTGGAAATATTTTAATAATTTAATTTAAATGTTTTGATTTATTATTTTTTGAATATATTTTTAATGTATTTTAATAATGTAAGGAAAATGAAGAAGAAAGAAACAGATGAGGAGAAGTGAAACGAAGAAGACAAATGGGGTTGCAGAGTAAAACGGAAGACAATTTGTTAAACGAAAATGAGAGATGGAAAGATTGGGTGCAGGGAGTAAAGTAGGAGAACTAGGTTTGAAATAAATTAAAATAATAAAAGTAAAAAATTTTAATCTGAGGATATAGTTGGAATTAAAAAAAATTGGGGAGGTAGAGGGAGAAAGGCGTGGTGGTGGAGGGAGCAACACCCAATCCTTGGCTATCCTCAATGTAGATTATCCAATGGCCGAGCCCAATACAACATGCAAAAACCCGAAATATTTGCTTTATGAACATGCCAAATTGATAGGGTGGCGAAAAGCAAAAGCATATTTTATAGCAATGGCTTTGTTTATTGTGACTCTAAGCCAATGATATTTTCCTTTACTTATTGTCCCTTTTCATCTGTCTCGCCTGTTCTGAAACTTTTACATGGTTTACAAAATCCTTGTATTTTAAAAAGCGTAACAAATTTATAGATTCTTTCTTTGAAGGGAAAATCAAACTTTTTGGGATCATTAAAGTCTAAGGTCCTCAAAGAATGACGTGAAACTTTTGTGGGGTAATTCCTTACTTCAAATCATACTAAAACTGGACATTCTGATGCCATGATTTAGCTTCCCTCCATATCAAGCATACTTTCCTTCAAAACTATCTTTAACTATATCAGATTGTATTTAAATCGTTTATTTGAGATTGTTGTATCCACAAGAGGATTATCTTCCACAAAGTTTTCCTTCTCTTGAAATTCCTCCTGGGGTTTGGTGAGATGTACCTTGAGTCTCTTTTGTTGGTTTTCATAATATAATATAATATATATATGTGTGTGTTTATGTGTGTTTCTTTTATGAAATTGATTATTATAATTTGTTAATATCCAGTTTTCAATCATATACTAGCTTCGATTGTGCGATTTTCTAATATCATTTTTTTCTTTTGTCAGTGGCAGGGTGTAACAGAAAGAATTGGACGAAGTTATCTAGTGAAGTAAATACATTCCTACATATCTACCTTCTTTTGTCCCAATTATTTCAAAGGTTCAACTCTATTTTGTTATTGATATTGTATAGAAATATTAAACTTTTATATGATGCTTCAAACGAGGGTTATAACCCATATATATCACTTATTGGTAGATGCTAATAGAGTTCAAACTTCTACTATATCCTTTGAATTAAATAATTTTGAACGTATATAATTTATGTTGTTTTATTTGTAGAAAAAGTTTGATTTGAATACATATATTATGTTTTTATATCTACACCAAGAAATTTATTATATTATGATTGATTATTATTTGTTGTTGATGATTGTGATTAGTTTGATCTTATGTAGCTTATTAAATAACTAAACTTTTCCTAATTGCTATGTGAAAACTATTGTTCGTAATTGCTATGTGAAAACTATCGTTCGTGCATGCATGATGTTTTCTTTTATTAACTCTGTTTTTATCTTACCATTAGTTTTTTATTACTTAGGAATAGATATCAAAAGACAATTTAAATTTTTTTTTTCATTTATAAAATACTTTTTAAAGGCAAAACTAGAGCACGGACTTCAAAATAACCAATACTTTATAAAAAAGAGTTTATGTTCATAGGCTAGCATAATTGACAGACCGTATTTCATATTTTAATTATCGTTTTCTATTTGTTCTTTTCATTCATGTTTTCGGCTCTAAAGGCAGGTGCTGAGTTTATAGATATACACGGGTTTGAAGTAAGAAAAATTGGGTGACGTTGTGTATATTTGTTTGTTTGCAGTAAA

Gene Sequence:

>Vu_34457(-)