Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34423 LG10 11092653 11094474 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 11092821 upstream_gene_variant
C/T 11092845 upstream_gene_variant
G/A 11092846 upstream_gene_variant
G/T 11092864 upstream_gene_variant
A/T 11092909 upstream_gene_variant
C/T 11092977 missense_variant p.Pro54Leu
T/A 11093048 missense_variant p.Tyr78Asn
G/A 11093089 upstream_gene_variant
C/T 11093124 upstream_gene_variant
G/T 11093141 upstream_gene_variant
A/T 11093156 upstream_gene_variant
A/T 11093210 upstream_gene_variant
T/C 11093265 upstream_gene_variant
T/C 11093333 upstream_gene_variant
A/T 11093595 upstream_gene_variant
T/A 11093668 upstream_gene_variant
G/A 11093674 upstream_gene_variant
C/T 11093681 upstream_gene_variant
G/T 11093697 upstream_gene_variant
A/G 11093708 upstream_gene_variant
G/C 11093733 upstream_gene_variant
C/A 11093901 missense_variant p.Thr133Asn
G/T 11093907 missense_variant p.Ser135Ile
C/T 11093977 synonymous_variant p.Cys158Cys
C/T 11094144 missense_variant p.Thr214Met

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34423.1
MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTTQSVDHHPQFNYSSNQLDHFGNQDNVTTKPAVQETIFSSTCPLFMFDTSSLDHGTTTVDTSNVRAELFQDSLGLSSETWNLSHHQVHHALPPQPAPAAATFTAATVIDSTNYLPPLIENVENMVPNMEVQGCSIDEEGEMALECLRRQELNEWVENQQHCPSFLFWDSVEGQLGGEELAPNTSNIGTNTLSPFPSSL*


CDS Sequence:
>Vu_34423.1
ATGGGTCACCATTCTTGCTGTAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCCGAGGAAGACGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGATGGGCGCACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCAATCACCACTACACAGAGTGTGGATCACCACCCTCAGTTCAATTATAGTTCCAACCAACTAGATCACTTTGGCAACCAAGACAACGTAACAACAAAACCAGCGGTGCAAGAAACCATATTTTCCTCGACGTGCCCTCTATTTATGTTTGACACTAGTTCGTTAGACCACGGGACAACAACAGTAGACACCAGCAATGTTCGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCAGCGAAACGTGGAACTTGAGCCACCACCAAGTCCATCACGCTCTTCCTCCTCAACCAGCACCGGCAGCAGCAACTTTTACAGCAGCTACAGTGATTGATAGTACGAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGCCAAACATGGAAGTGCAGGGTTGTAGTATAGACGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAGCGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAACCAATACACTTTCACCTTTTCCTTCATCTTTATGA


Promoter Sequence:
>Vu_34423::LG10:11090653-11092653(+)
CTTATGTTCTTTTTTTCTCTCTCCTCTAAAACATCTTTTTTCATAATTGAGGGCCAGATATTTTTTGTTATTATATGAAAATAAATTTATCTAAATCTTAATGTAGTTGATAATTCTGGTTTGAGGCTTATGTGGTGGTATGGTATGGATGATGAGCAATGATTATAGGTTTTATGTTGTAAAAGTTGCAGCTGGTGAAATCTAAAACCTGAGATTTAGAAGTCCCATTTAGGCTATTAACTTTAATTGATGTCAATCATGTCACTTATACACGTTTTTCCAACACCACTAATGAAATTATTATTCCTTCTTAATTAAATGAAAAGACAATCAAGTCAAAATAATTAGTAGCTTGGGCTTGCTTAAATCATAAAACAACAACTCATTTTTCAGTCTCTCTCACACTTGTTCTATACATTATATTGCTTTTGAAGATTCTGTTGGAAGAAACAAATATTTTAAATGTCAATTTCTTTCCGAATATATGAAATTTACGCTATCCCACCTGCCACTATCACCAATACATTTAGTAAATACTATGATAATACTGTTCAATCAAAATTAAATTAAATCAAGAAATAATTTACATGTTAAAATATAAATATATAATTAACATCGAACAAAAGAAATTTTTAATGTTTCTTTTTAAATAAATGATACTTTTTCACACACAAATCTTTTATATTTATTTAACATTATTTTTACTATGTGATTCTTCATCGCCTAAAAAAATTATTCGAAATTTATTCAATTTCTCATCCCGATGTTCGTATGGTTAATGAAAGTGAACCTTATAGCCTATCATATTGAGGTTATAAAACTATATATATAAACGACAGATTTGAAACTGAACTCATCACATATTATTAAAAGACAAAATTATTTGTTTCCCATAGCATACCATAATAATGTTGAACTCAATGCCACCACTGTAGAACCAACTTTCCTCCATGAGGTTGGGAGTTATATGATAGGCACACGGTTACTTTTTCTTTCAGTGTCTCAGGAATAAGAATATAATATCTATTTTAAAAACTATATATAAAAGAGAGAGCGAGAGATTATGATCTCTATAAATACATCAGAATAATGCAGACTTCAAAACAAAATCAATTATGCATGACTGAGGCTGTAGAATAAACATTGCTTAAAAACTAAAACAACTTTGTTCAAATTGTAGGGTAGTTAATTAACTATATGTATTCTGAAATTCTGGCCTATATTATTCCATTAAAAATGCAAATCATTACCTTCATTGAATAAACACAATCTTGATGTAATAATAAAGCTTAAAAATGATTTTGTTATTTTAAACAAGCATAGAATGATCAACAGTTTCAGCCTATCATACTTTGGTCATAATTTTTATAAGAAAATAAAAGGAAAATAATTACTCATCTTACTGGTAAGTGTTTGATTTGATTTATTTTATGTAAATAATTAGTTTTTTATTTTAAAAGAATGTACTATTAAGAACGATCACTCTCAGTGAGCAATTGTTGCTATTGATGAAATGACGTTGCTGAATAGTTTGAGACAGGGAAGCGCATGAAACAACCGGCAATATTCTTTCTCTCGTTTTCATCTTCCGCTAGCAATTGGGTTGTTATTAATTTTGGGAGTTTTGTGGAAGTGGGAAAGAGTTAAGTGTGTGAAGAAAGTTTGGGTACGTAAACTACGCATGTACGTAGAAATGCTGACACTGTTACAAGCACAAGGTTGATGAAACGTCGTTTTAGGGTTAGATGGAGATGTGGGTCCCACTCGTGGACCCCATCAGGTTGTAAATGTCGGCTCTTGCACTGTCTGCTTCTCCTCTCTCTTTTAAAGGATGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGATTGCATACAAATTAATCCCCGCATTTGATCGAGGCAATAAGAGGCCACTGAGGAAACATTTAAGACTAAAAGACAGGAATAGAAGAAGACTACATAGGTAGCTACAAAAGAAGTTAAGAAATTAAGA


Gene Sequence:
>Vu_34423(+)
ATGGGTCACCATTCTTGCTGTAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCCGAGGAAGACGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGTCTCTCTTTTTATCTATTTATCTATTTTTATATCAAAAATATCTCTTCTTTCCTTCATCGTGTATGGAATTGCCCTAGCTAGACTTGCTTTTTTGTGATGAAATCAACCCTTTTCTTTTATTAATTTATGATTGATGTTCATTCTTTGGCCTGGCTTTCAGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGGTTTGAACCACGCTTCATTGTACACACTATCAACCATTTTTCATTACGATCACTGCATTTTCCGGTTTGCTCTTGCCAATTCTTTCCAATCACTACCTTGTATACTTGTCCTTCTTCTTTCTATCAAACACCAACCCTAAAATTTTCATATTGATCAGTATGAAAGGATATTTCAAGAAAGAAACTATGGTAATGGTTCAAATTAATTGGAACACGATCAATCACAGATAGTATTATTATGCAGTTAATTTTCCATAGAACGAGCAATTAGAAATAGAGTTGAGACCTGTAGCACTAGTTATGTAACTCATTCATAGGAATTAGTCGTAATTAAATCAGCCATAGTTATTAACGAATCAATCTGAAGGATCATGCCCGGAGCTACAGTTTTGGAGAAGTTAAGCAGGCAATTTTGTCAGTTGAAATTTACTTGTCTGTTTTCAGTGTGTGTGCACTCACAGCCTCTCGTGTCGACATTCATTCTAATACTACTTTTTCTTGAAGCAACTAAATTGTTATTTTATTATCCATTTCTTTCCACGTTTTTCTCAACACATTTGCTTCCAAATTACGATTCTACGCGAGACATCTTAACTGAGAAGACACTGTTTTTAATAATGTAAAAACATTATATAAACTCGATTAATTAACTATAGATGTTCTTTCTTTTGCTTGGGAAATGCAGATGGGCGCACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCAATCACCACTACACAGAGTGTGGATCACCACCCTCAGTTCAATTATAGTTCCAACCAACTAGATCACTTTGGCAACCAAGACAACGTAACAACAAAACCAGCGGTGCAAGAAACCATATTTTCCTCGACGTGCCCTCTATTTATGTTTGACACTAGTTCGTTAGACCACGGGACAACAACAGTAGACACCAGCAATGTTCGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCAGCGAAACGTGGAACTTGAGCCACCACCAAGTCCATCACGCTCTTCCTCCTCAACCAGCACCGGCAGCAGCAACTTTTACAGCAGCTACAGTGATTGATAGTACGAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGCCAAACATGGAAGTGCAGGGTTGTAGTATAGACGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAGCGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAACCAATACACTTTCACCTTTTCCTTCATCTTTATGA