Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_34396	LG10	10889150	10890118	PREDICTED: ethylene-responsive transcription factor CRF1-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/C	10889166	missense_variant	p.Pro318Arg
T/C	10889169	missense_variant	p.Asp317Gly
G/C	10889174	synonymous_variant	p.Val315Val
A/G	10889240	synonymous_variant	p.Phe293Phe
G/A	10889407	missense_variant	p.Pro238Ser
C/T	10889423	synonymous_variant	p.Lys232Lys
G/C	10889441	synonymous_variant	p.Ser226Ser
T/C	10889546	synonymous_variant	p.Glu191Glu
C/T	10889572	missense_variant	p.Val183Met
A/G	10889621	synonymous_variant	p.Thr166Thr
C/G	10889721	missense_variant	p.Arg133Pro
T/A	10889732	synonymous_variant	p.Arg129Arg
C/A	10889733	missense_variant	p.Arg129Leu
G/C	10890031	missense_variant	p.Pro30Ala

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_34396.1

MTTPPTKFTHHTKLLTLTHTQHHPPKNPCPRLVRITVTDTDATDSSSDEEQTFHSSKRQRQRQRHTKFINEISIEPCAAENDAVFSGKRVRRRSVVGKGRVAETPRGSTGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFITPPATWHNKDQTPVSNGYASVEETQNKNLFSPTSVLHSCSLSEEAESVTGKDDDYSSVSESSKAKAESPFPVPIPIPSELKFDFEDCLAAPDVYGELDGAAAAESVLFSDDDWPGVFLTACEDFGLKSWHADRNHDFFQDIDDLFVSDPLLAL*

CDS Sequence:
>Vu_34396.1

ATGACTACGCCACCGACCAAGTTCACTCACCACACCAAACTACTCACACTCACTCACACCCAACACCACCCACCAAAAAACCCATGTCCCAGACTTGTCAGAATAACCGTCACGGACACTGACGCCACCGACTCCTCCAGCGACGAAGAACAGACCTTTCACTCTTCCAAGCGCCAACGCCAACGACAACGCCACACCAAATTCATCAACGAGATTTCCATCGAGCCCTGCGCTGCCGAGAACGACGCCGTCTTTTCCGGGAAGAGAGTTCGAAGAAGGAGCGTGGTGGGCAAGGGCAGAGTTGCAGAGACTCCGCGCGGGTCGACCGGAAAGAAATTCCGCGGAGTGAGACAGAGGCCGTGGGGAAAATGGGCTGCCGAGATACGAGACCCGTCGCGACGCGTGAGGTTATGGTTGGGTACCTACGACACTGCCGAGGAAGCCGCCTTAGTGTACGACAACGCGGCCATTAAGCTGCGTGGACCCGACGCGCTCACTAATTTCATAACGCCACCTGCCACGTGGCACAACAAAGACCAGACGCCGGTGTCCAACGGTTACGCCTCCGTTGAAGAAACTCAGAACAAAAACCTGTTTTCTCCCACCTCCGTACTTCATTCTTGCTCTTTGTCTGAGGAAGCTGAATCCGTGACCGGCAAAGACGATGACTACTCCTCCGTGTCTGAAAGTTCCAAGGCAAAAGCTGAGTCACCGTTTCCGGTTCCGATTCCGATTCCGAGTGAACTAAAATTTGACTTCGAAGACTGTTTGGCGGCGCCGGACGTGTACGGCGAGTTAGATGGCGCTGCGGCGGCTGAGAGTGTTTTGTTCTCCGACGATGACTGGCCTGGGGTGTTTCTCACTGCTTGTGAGGATTTTGGTTTGAAAAGTTGGCATGCAGACAGAAATCATGACTTTTTCCAAGACATCGACGATTTATTTGTCTCCGATCCTCTTCTCGCTCTTTGA

Promoter Sequence:
>Vu_34396::LG10:10890118-10892118(-)

GTCTTAGTTTGCTATATTTTTTTAATAAGATTGTTGAAGTAGGTTCCAAGCTCATACGTTCTTTAGCGTTTTTTCAAACTTTTTATAATAAATTTAAACGAGATAATATCAATATATAACGTTATTCAAACTTTTCTTTGATGATAAATAAATGGTAGATAATGTAAGTTTGGAACCAAAATAACCTATTCAAACTTTGAAATGAAACATTGTAAATGACATATATTTTTTTTATTAAAAAAAGCTAAATGCTTTGAAAGATAAAGTATATCAAGAGACCAGTCTTTCACTCAGACCATGTCTTATATAAGAAAAATAGAAAATAAATCAATGGTAAAAACAAATTCTAAATAGTATGAATTTAAAAGTAATTGTTACGTATTCTATAGTTTGTTCATAACTTATTTTTTTAAAAATAAGTTTATTACTTAAAATGTTATCTCGTGAACATTGTTATATATTTTAAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATTAAGATAAATGCTAATTAGCAGTGTCAGAAGACCACTGAAGATATTTAGAGTATCTTTTGTACTATGATATTTTATAATATATAGCCGAAGTATTTAATAATTGAATCCTATTAAAACAGCATAAGTCGCTGCTCCTTATTTTATTTCCGTCAAAGGGCGACCGGTAGGGTTTCAAAGTGTCTCATCTCACGTGATTGGACTGGCTTTTGTCCTGTCCACGTGTCTTTTTTAAATTGCCCGATAGGAACAGTAGCATCTCAAACAGGTACACAGAAACCAGTGATTTTTAAATGCTAATTATTTCTTCAATTAAGGTTAGCAAAAATATTACTACTAACTTAAGAAATATAGTCGAGAATAACTTATTTTCCAATTAATACGTGAAAGATTACATCTGTATAATGAGATCGTCATTTCCTTTTCAATTTATCATTGAAACGATCATTAAAACATGCAAAATAGAATTATACTATTTAAAAATTGAGACGATTAAACCCAAATAATTATGTGAATATTAAATGTGTAACGTTAACATTTTGTTGGTAAGGAAGAAAGCTGATAAATGTTTTTAAAAAAGGTAGAGATATTAGGTGGTTTGTATTTAAGTGAAAAATGTTTTATATTTTGGTGAATAGGTTATGGAAGCTATAAAATAGGTTTGGGAAAAGAAAGAAGAGTACTTAGACAGTTATCCCTGTATGGAGTAGAAGTACCTTTGCGAAAATCTCAGAGCCTCTTGTTTTCATTTCATTTGCTAACAGATCCTTTTCTTTTTCTTGGTATCATCATTTCATCTCTGTGTAGTACACAACTTGCTGTGATTGTTGCTGCAAGAATCAGGGTTCCGTTAGTTTACTATTTCAAAACCATACAACACAAAGTACGCAAGCACAGGGACTTGCTCGGCAGGGCAGGGCAGAGCAGTGCAGTGCATAGGTCGCAATTTCGGCAACGCAACACAGTGCCAGCTGCAGGCTTCCTTTATCTTTTCCGGAGAAGACAGTGTTTAAGATTTAAAATGTAGCTTTATTTGTAATATTTAATGGTTATGTTTTTGTATAGCCCCACAGAGTTCACAGGCTGAGGCTACAGTCTTGGGTCTGCCTCATATGCCTCCACTTTTTTCGTACCTTCTGTCTCCTTCCTTCAGCTCTTTCACCCAACTTGTTCTGCACCACCTTCTTTCTTAATTTCACGCTCTTTTCTTCAAATTACTACACTCCCCCTTCAATTACTCTCTCAACCATATCTATTCAATTCAAGAGTAAATTCACCCTACATTTCTCACTCTTCTAAAACGTGTCCCCTCTCCCTTCTACCTTTATTTATTCTCTTCTCCCTCCTCGTGCCCAAAGGAATATCTCTCTCACCCTTTTTTTTTCCCTTTTCCCTCTCCACTTCTTCCTCCACCGTTTCCCTTACTCGATGCTTTGCTATTGCTACTCTTCTCCAAC

Gene Sequence:

>Vu_34396(-)