Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34356 LG10 10587539 10589729 PREDICTED: scarecrow-like protein 3
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 10587691 5_prime_UTR_variant
A/G 10587697 5_prime_UTR_variant
C/A 10587698 5_prime_UTR_variant
C/A 10588078 synonymous_variant p.Pro33Pro
G/A 10588120 synonymous_variant p.Leu47Leu
T/C 10588125 missense_variant p.Leu49Ser
T/A 10588205 missense_variant p.Ser76Thr
C/A 10588207 synonymous_variant p.Ser76Ser
C/G 10588211 missense_variant p.Leu78Val
G/T 10588570 missense_variant p.Lys197Asn
T/A,* 10588736 missense_variant p.Ser253Thr
A/T 10588918 synonymous_variant p.Ser313Ser
C/T 10589150 synonymous_variant p.Leu391Leu
T/C 10589191 synonymous_variant p.Ala404Ala
A/G 10589206 synonymous_variant p.Arg409Arg
T/A 10589239 synonymous_variant p.Leu420Leu
T/A 10589242 missense_variant p.Asp421Glu
T/A 10589478 3_prime_UTR_variant
G/A 10589504 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34356.1
MESVFQEEGSSSVTSSPLQFFSMMSLSPGIGSPYPWLRELKSEERGLYLIHLLIGCANQVANGSLENANMLLEQISQLASPDGDTIQRVAAYFTQALADRILKTWPGLHRALNSTRIAMVSEEILVQKLFFDLFPFLKMSYILTNQAIVEAMEGEKMVHVIDLNATGPAQWVALFRVLSARPEGPPHLRITGVHHQKEVLDQMAHKLTEEAEKLDIPFQFNPVVSKIENLDFDKLRVKTGEALAISSILQLHSLLALDDDASRRRSPLPANNSNAIQLQKILQMNPNTRCDLVDKDMVHGYSPSPDSASASASSSPGSSSASMKSESFLNALWGLSPKIMVVTEQDFNHNSSNLMDRLLESLNSYAALFDCLECTVSRASLDRMKIEKMLLGEEIKNIVACEGAERRERHEKIDKWIQRLDLSGFANVPLSCQGVTQAMRFLENYGCNGYRMREENGSVVIYWQDRTLFSVTAWRSRR*


CDS Sequence:
>Vu_34356.1
ATGGAATCAGTGTTTCAAGAAGAAGGGTCATCTTCTGTAACTTCTTCCCCCCTTCAGTTCTTTTCCATGATGTCTCTTTCACCTGGCATAGGATCTCCCTATCCTTGGCTTAGAGAACTGAAATCTGAGGAAAGGGGTTTGTATTTGATCCATTTGTTGATCGGTTGTGCCAATCAGGTGGCTAATGGTAGTCTTGAAAATGCAAACATGTTGCTTGAACAGATTTCCCAGCTTGCTTCCCCTGATGGAGATACTATACAGCGAGTTGCTGCATATTTCACCCAAGCACTCGCTGATCGGATACTGAAAACATGGCCTGGTCTCCATAGGGCACTCAATTCCACCAGAATAGCTATGGTGTCTGAAGAAATTCTTGTTCAGAAGCTCTTTTTCGATCTTTTTCCGTTCTTGAAGATGTCATACATTCTGACAAATCAGGCTATTGTTGAAGCCATGGAAGGGGAGAAAATGGTGCATGTAATTGATCTCAATGCCACAGGCCCAGCACAGTGGGTTGCCCTCTTCCGTGTTCTGAGCGCACGCCCTGAAGGCCCTCCTCATTTGAGAATTACTGGGGTGCATCACCAGAAGGAGGTTCTGGATCAGATGGCTCATAAACTCACTGAGGAGGCAGAAAAGTTGGATATCCCATTCCAGTTCAACCCTGTTGTCAGCAAGATAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCACTGGCAATCAGTTCCATTCTGCAGTTACACTCCCTTTTGGCCTTGGATGACGATGCCTCCAGGAGAAGATCTCCTCTTCCGGCAAACAATTCAAACGCAATTCAACTGCAGAAAATCCTGCAGATGAACCCAAACACACGCTGTGATTTGGTTGATAAGGACATGGTTCACGGCTATAGCCCAAGTCCAGATTCAGCCTCAGCTTCAGCCTCATCCTCGCCAGGATCGTCATCTGCATCAATGAAATCCGAGAGCTTTCTGAATGCCCTGTGGGGGTTATCACCAAAGATCATGGTTGTAACGGAGCAAGACTTCAACCACAACAGTTCAAACCTGATGGATAGGCTGCTAGAATCTCTAAATTCTTATGCTGCATTGTTTGATTGTTTGGAATGCACTGTCTCCAGAGCATCCTTGGATAGAATGAAGATCGAGAAGATGCTTCTGGGTGAGGAAATCAAGAACATAGTAGCTTGTGAGGGAGCTGAAAGAAGGGAAAGACATGAAAAGATAGATAAGTGGATCCAGAGACTTGATTTATCTGGTTTTGCAAACGTGCCTTTAAGCTGTCAGGGTGTGACACAGGCAATGAGGTTCTTGGAGAACTATGGCTGTAATGGATATAGAATGAGGGAGGAAAATGGCTCTGTAGTCATTTACTGGCAGGATCGAACCTTGTTTTCTGTGACAGCTTGGAGATCAAGAAGGTAA


Promoter Sequence:
>Vu_34356::LG10:10585539-10587539(+)
TTAATGGTAATTTGAGAAAAAAAAATTTACTTTTAAGTTGTATGTAAAATATTGTCTTCATGCTATTCCAAAGAAAGGCATTTATAAACAAAGAATGGTGTATATATATATATATATATATTATATATATATATATATATATATTTTATATATATATATATATATATATATATATGTTATTAATTAATAAATATTATTATATTTGTGATCATGTTTTTGGACTAACTATGTGTCTCAAGATCAAAGTTTTGATATGTTACTAATAAATTTTTGTAAGATTATTATTTATTACGATAATAAATGAAAAAAGAAACTATAATTAACTGATAAATATTCATATGATGATTACATTCTTTTATTATACAAAATTATAGTTTGAGTTTTCATGTTCAATTTTATGATCACTTTAAATAATTAATGAGAATGCGTAGTAAAAAAAACAACAGTTATAATTTCATATTCTTAGCCTAAAATAACTGTGTAACACTAGGTTAAATTAGAATTCAACAAAGTTATAACATAAAGTGATGAAAATCTGTATTAGATTTAGATTATAAATATGTGATTTATAGAAGATGAATTAAAAAGTATTATATTTGTATATTTATTCAATCATGCAAGTCTTATAGTGTCATATCTATTATGATGTTCTCCATCACTTGCCTCAACATAAATATGATATATAATTTGAGTACAATAAATCTATTATCACTTCATAACAATGAATATAATATAACTTTATCATAATAAATGCGAGATAATTTTATTATTATTTATAAAGTGATTTTACTTGTTTATTAAAGCAAGTGAATAATTATATTAACTTTTATAATCAGTATAAAAAATTTAAATTAAGTGTATCAAATCTCAAAGTCTCATGATGTTATATATCATTTCACACAATATAAATTGAGAAGGAAAAATATAATACAGCACAACACAAGAATCCAATATACAATTCAATAACAATAAAACAAGAATCCTAATAGAATTCAATAACAATAAATATAACATAACTTCATTATTTATTACTATTTATAAAGTAATAACTACTAGAACAAATATGTACACGGAACTATTTATAAAAAAACTGAAATTAAGTCATAAAGTATTATACTTTTCCTTGGTACGATAATTGGTAACAAATGTTTATTTCAAAAGAACCAATAATAGACATATTTTTAAGGAATTGTTTTTGGAAAAGCTTCTCTCACTTCCTTAGAATAGATATTACTTTCATAAATAGAAAAAAGAAGAGAAGAATAAAAGAATTGGAGTTTGTAATTAGATTATAATAGAGTTATTATGTAGAGTGATTTTGATTAGACGGCACAAAGAGAGAAAATGAGATGGCGTGTTAATGGGGTTTGGTAATTTGCAAGGAAAAAAATGAAGTGTAGGTGGGTTTGGGTCGTGTTTGGAAGTGCCACCTCAGAATCCACAAATAGAGATAAATGAACAATCTACTTTTGGAGTCTTCCTTAACATCCTTGTCTGTTTGTCGTTGATAGAATAAGATATTAGCCATTGTAATTGTATGCTCATTGCTTTGCAAAATAAAACAAAACTCATTTCTTGGAACCATTTCAACACTTTTCTTGCCCTTCTCACTCACCCCACTAGGAGACAAATCTGAGCCCAATGTTTGTCTTTGCTAAGGCATGTTTGGATTCTTGCAACCTTAGGGAATATTATAACCCCACGATTCCCTATCCACCCAACGTCAAGACAAACACACCACTCTAAACACAACACACAAACCTTAACCTTTGGACTGTGTTGAGTTTAGTTGAGTGATCAAACAAACACACCTTCTAGAGTTTCCTCACAGAGAAACGACAGTTTTCGGAACGTAAAGACAGAAACAACCGAACCAAGACTCTCACCAATTCCACACTCCACTAACCACTGAACGACAACAAAACAATAAAGACAACAGAACCCCTTCACGTATTGTCTTCTTTTCTCTTCTCTTCCCATGAACCACTCCTTCAATCTGC


Gene Sequence:
>Vu_34356(+)
CTGCTGCTTCTGTTAAACCTTCTTCAATTTCACTCTCACACCAAACACGCCACAAACTCATTCACTGCTATTCTGCTTTTTCGGAATGTTCACACCGCCAAGCTTCGCCATTTTCAGGGGGCTTCTTTTCCTTTCTTCTTCAATTGCAAAACCCATCAACGGTTTCGCTTTTCCATGTTCGATTCTCAAAATGTGGTTTTTGTAGGATTATCTCGTTTTCTCACCACCGTTTCCTTACTTTGCTCCGAAAATATTTCCTGAATTTAGTCGAAAAAACTCCTTTAATTCACTTCTGGCGATTTTTTCGCTTGCATTGTAAAGTATATACTCAGGTTTTTGTTCATACTTGGGGAAGGTTTGATCAAACCTGTGTGCCTCTTGATAACTATTACCATTTTACCACCTTTTCGAGGTCTATATAAGATTGTTGTGGTTGGTTTCATGGAATCAGTGTTTCAAGAAGAAGGGTCATCTTCTGTAACTTCTTCCCCCCTTCAGTTCTTTTCCATGATGTCTCTTTCACCTGGCATAGGATCTCCCTATCCTTGGCTTAGAGAACTGAAATCTGAGGAAAGGGGTTTGTATTTGATCCATTTGTTGATCGGTTGTGCCAATCAGGTGGCTAATGGTAGTCTTGAAAATGCAAACATGTTGCTTGAACAGATTTCCCAGCTTGCTTCCCCTGATGGAGATACTATACAGCGAGTTGCTGCATATTTCACCCAAGCACTCGCTGATCGGATACTGAAAACATGGCCTGGTCTCCATAGGGCACTCAATTCCACCAGAATAGCTATGGTGTCTGAAGAAATTCTTGTTCAGAAGCTCTTTTTCGATCTTTTTCCGTTCTTGAAGATGTCATACATTCTGACAAATCAGGCTATTGTTGAAGCCATGGAAGGGGAGAAAATGGTGCATGTAATTGATCTCAATGCCACAGGCCCAGCACAGTGGGTTGCCCTCTTCCGTGTTCTGAGCGCACGCCCTGAAGGCCCTCCTCATTTGAGAATTACTGGGGTGCATCACCAGAAGGAGGTTCTGGATCAGATGGCTCATAAACTCACTGAGGAGGCAGAAAAGTTGGATATCCCATTCCAGTTCAACCCTGTTGTCAGCAAGATAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCACTGGCAATCAGTTCCATTCTGCAGTTACACTCCCTTTTGGCCTTGGATGACGATGCCTCCAGGAGAAGATCTCCTCTTCCGGCAAACAATTCAAACGCAATTCAACTGCAGAAAATCCTGCAGATGAACCCAAACACACGCTGTGATTTGGTTGATAAGGACATGGTTCACGGCTATAGCCCAAGTCCAGATTCAGCCTCAGCTTCAGCCTCATCCTCGCCAGGATCGTCATCTGCATCAATGAAATCCGAGAGCTTTCTGAATGCCCTGTGGGGGTTATCACCAAAGATCATGGTTGTAACGGAGCAAGACTTCAACCACAACAGTTCAAACCTGATGGATAGGCTGCTAGAATCTCTAAATTCTTATGCTGCATTGTTTGATTGTTTGGAATGCACTGTCTCCAGAGCATCCTTGGATAGAATGAAGATCGAGAAGATGCTTCTGGGTGAGGAAATCAAGAACATAGTAGCTTGTGAGGGAGCTGAAAGAAGGGAAAGACATGAAAAGATAGATAAGTGGATCCAGAGACTTGATTTATCTGGTTTTGCAAACGTGCCTTTAAGCTGTCAGGGTGTGACACAGGCAATGAGGTTCTTGGAGAACTATGGCTGTAATGGATATAGAATGAGGGAGGAAAATGGCTCTGTAGTCATTTACTGGCAGGATCGAACCTTGTTTTCTGTGACAGCTTGGAGATCAAGAAGGTAAGACAGATTCATGAAGAAGAATAGTGATGTAGTGATGTAGTGATGGATGGAGTCTCTTATAATTTTTTTCTTTTCTTTGTTTCTAATTGTATGAAAGAGTTTTACCAATATATGTGGTGATTTCTACTGATGAAGACCAATTCAGAAGAGAGAAATGGGAAAATGGAAAAGTGTGAGAAAGTGAAACAATTATCTGTAGTTGTGTCTACCATTCCATTGTTTAGTCCTGTGCTCATTTTGTTCTTCGCTAATTCCTATACTGTAACCTTTCTGCATATGTTGTGTAAGACCTAATATAAGTTTATTTTTAGTTC