People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_34343 LG10 10508755 10512302 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   phosphorylation of RNA polymerase II C-terminal domain, protein autophosphorylation, phosphorylation of RNA polymerase II C-terminal domain, protein phosphorylation, protein autophosphorylation, phosphorylation of RNA polymerase II C-terminal domain, protein autophosphorylation, positive regulation of transcription elongation from RNA polymerase II promoter, positive regulation of transcription elongation from RNA polymerase II promoter, phosphorylation of RNA polymerase II C-terminal domain, positive regulation of transcription elongation from RNA polymerase II promoter, protein phosphorylation, phosphorylation of RNA polymerase II C-terminal domain, positive regulation of transcription elongation from RNA polymerase II promoter, protein phosphorylation
Cellular Component   is active in   cyclin-dependent protein kinase holoenzyme complex, nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein serine/threonine kinase activity, cyclin-dependent protein serine/threonine kinase activity, ATP binding, cyclin-dependent protein serine/threonine kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, cyclin-dependent protein serine/threonine kinase activity, ATP binding, RNA polymerase II CTD heptapeptide repeat kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
T/C 10508907 synonymous_variant p.Gly51Gly
G/A 10509050 missense_variant p.Arg99Lys
G/A 10509429 missense_variant p.Met195Ile
A/T 10509540 synonymous_variant p.Leu232Leu
C/G 10509542 missense_variant p.Ala233Gly
C/A 10509603 upstream_gene_variant
A/G 10509608 upstream_gene_variant
C/T 10509609 upstream_gene_variant
T/A 10509629 upstream_gene_variant
C/G 10509641 upstream_gene_variant
T/C 10509653 upstream_gene_variant
A/G 10509667 upstream_gene_variant
C/A 10509686 upstream_gene_variant
A/G 10509711 upstream_gene_variant
G/A 10509720 upstream_gene_variant
A/G 10509723 upstream_gene_variant
G/C 10509739 upstream_gene_variant
G/A 10509780 upstream_gene_variant
T/G 10509812 upstream_gene_variant
A/G 10509834 upstream_gene_variant
C/G 10509853 upstream_gene_variant
C/T 10509934 synonymous_variant p.Asp268Asp
T/A 10510099 synonymous_variant p.Gly323Gly
G/A 10510135 synonymous_variant p.Leu335Leu
C/T 10510212 upstream_gene_variant
T/G 10510326 upstream_gene_variant
T/C 10510332 upstream_gene_variant
G/T 10510429 upstream_gene_variant
G/A 10510448 upstream_gene_variant
G/C 10510487 upstream_gene_variant
G/C 10510492 upstream_gene_variant
A/C 10510640 missense_variant p.Thr385Pro
T/A 10510676 missense_variant p.Phe397Ile
G/T 10510800 upstream_gene_variant
G/A 10510894 upstream_gene_variant
T/C 10510930 upstream_gene_variant
T/A 10511174 upstream_gene_variant
A/G 10511224 upstream_gene_variant
C/T 10511225 upstream_gene_variant
G/A 10511297 upstream_gene_variant
G/A 10511298 upstream_gene_variant
A/G 10511427 missense_variant p.Arg482Gly
G/A 10511766 synonymous_variant p.Arg561Arg
T/G 10511897 upstream_gene_variant
G/T 10511997 upstream_gene_variant
A/T 10512047 upstream_gene_variant
C/T 10512194 synonymous_variant p.His599His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_34343.1
MGCICSKENKDKVDEYEKEKEREKESNKSSVQLVAPSVSTAQSDSTRGTDGSVPLIVDTSTQAIRGSVVVTAEDKSNHSDATQGQQKRRVTVSCGVDDRMPMMSRILSVQHIAGEQVDSGWPIWLSSVAAEAIKGWVPRRADSFEKLGQVGQGAYSSVHKARDLETGKIVALKKVRFSSADVESVRFMAREIYIMRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLATVHGLKLTESQIKCFLQQLLRGLQHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATVYDPEKKQPLTSRVVTLWYRAPELLLGATEYGEAIDLWSVGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPQHTYNRQISETFEKFSSPALALVDKLLTIEPEARGSATSALESEFFTTNPLPCEPSSLPKFSPSKEFDSKRRQKEATRKNQEAVRGRAPASVLRGAGDTKALGSPQYNAQGNISMLRKPNSIMCRQKYLCQENREAKENGEGGRVSVHGGFTHAATMTRGSVAGSSTLSKRVEPSLKNQRSHLNPATADLCTSALKKEPDSSAVESTMGYMPKKNRIHYSGPLMPPGGNLDDMLREHEKLMQDVFRSVKKANL*


CDS Sequence:
>Vu_34343.1
ATGGGGTGCATCTGCTCAAAAGAAAACAAAGACAAAGTTGATGAGTATGAGAAAGAGAAAGAAAGAGAAAAAGAGTCGAACAAGTCTTCAGTGCAACTGGTTGCTCCTTCTGTCTCAACTGCACAGTCAGATAGTACTAGAGGCACGGATGGTTCGGTTCCCCTTATTGTTGACACATCAACACAAGCAATTAGAGGGTCTGTCGTAGTGACTGCAGAGGATAAAAGCAACCACTCAGATGCCACACAAGGCCAGCAGAAGAGGCGCGTGACAGTGAGTTGTGGTGTAGATGACAGAATGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTCCGGATGGCCGATTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGGCCAAGTTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCTTTGAAGAAGGTTCGGTTTTCAAGTGCAGATGTGGAAAGTGTTCGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCCAATGTCATGAAGCTCGAGGGTCTTGTTACTTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTCGCTGGGCTAGCAACTGTACATGGCTTGAAGTTAACTGAATCACAGATAAAATGTTTTCTGCAGCAACTGCTTCGTGGGCTTCAACATTGCCACAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTTATTGACAACAATGGAAATCTTAAAATAGGAGATTTTGGTCTTGCAACAGTATATGATCCTGAAAAAAAGCAGCCATTGACTAGTCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGTGAAGCAATTGACTTGTGGAGTGTTGGTTGCATTCTGGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCACCATCTGAAGACTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAGCCACAACACACTTACAACCGCCAAATTTCAGAAACATTTGAAAAATTTTCTTCTCCGGCATTGGCTCTTGTTGATAAGCTTCTGACAATAGAACCAGAGGCTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGTTCTTCACTACAAACCCCTTACCTTGTGAACCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAAGCGTCGACAAAAGGAAGCTACAAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCATCGGTTTTAAGAGGAGCAGGAGATACCAAGGCACTGGGTTCGCCACAGTATAACGCTCAGGGAAATATATCTATGCTGAGGAAACCAAACAGTATAATGTGCCGTCAAAAATATCTGTGCCAGGAGAATAGGGAGGCCAAGGAGAACGGTGAAGGAGGCAGAGTAAGTGTACACGGTGGCTTCACGCATGCTGCTACAATGACGCGAGGCAGTGTAGCAGGATCATCCACATTGAGCAAGAGAGTAGAACCATCTTTGAAGAATCAGAGGTCTCATTTGAATCCTGCAACAGCAGATTTATGTACCTCTGCCCTCAAAAAGGAACCAGACTCGTCTGCTGTTGAATCCACCATGGGTTATATGCCGAAGAAAAATAGGATACACTACTCTGGACCATTGATGCCTCCGGGTGGGAACCTCGATGACATGCTTCGAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCTGTAA


Promoter Sequence:
>Vu_34343::LG10:10506755-10508755(+)
TAAATATAATTAAATGAATGTATTTTATTGGTTAAGGAACTTTATTTGTCGTTCTTATCCTTTCTCAATTTTTTATGCACGTGCGAATCTTTTCAATATATGCATGAATACGATAAAAGTTATTAAGAAATAGATCATATAAATTAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTACCAGCAGGTTATTTTCCTGTCAACAAATAAGTCACTAAAAAAACTGTTACATTTTTATAATCCAAACCTCAAAGAATTAGACAAACTTTTTTTCTTCAATATCGTTTCATCTATATTCATATTTATTTTTCAATTTCACTTTTTAAATAATATTTCTTTTAAATTTACTTTTTAATAATTATTTCTCTAAGTTTAACCACTTTTTCTTTTTACAATTTTTTTTTAAATTTAAACATATAAAATAAATAGAAATTATTTTATTTCTGTAATTATAACAATAATATTTATTATTTTTTACTATCCTAAAAACAAAATGTAAACACATGTCTTCCCTGATTCACAATAAAAAAAATAAAAGTCCACTAATTGACTTTATTTTTCACATTTATAATAAAAAGAAATATATATATATATATATATATACTATTAATATGAAGTTTTTTTCCTTTTTGTTTTAATCCATTCAAATAAAAATTTCACTTGAATCTAACGAAAACAATGTTACCATTATTATTGTATTAAAAAGGCGCAATAATAGCTTTTAAGACTATATATTTATTTTATTCTGGTTAAATTTGTTAAACTTTAAAATAATTATAATAACAAAAAATAATATTTTTTTATTATTAAAGTAAAATTAAATAATTTCTACAATTTCAATGTTTGTAATGTTTATTTTTTAGATAATTTTTTAAAATAATAATTGTTTTAATTAAAATAAATAAATTTAAGAAAAAAGAGTTAAATTAAAAAAAAATAACTTAAAATTTAAAATTGATAAAAAATATATTTTAATTTAAAAAATAAAATTGAAAACAAAATATGGAATATTATCAAGTAGTATAGACATGTTACGTTGAAATGAGCCTTATTAGATAAAAAACAGAAACAAAAATATATTTAAACCTTAGATGTTATGTTTTAACGTTAATTCGGTGTTAAAGTTGGTTTAACAATATGTTAAATTAATGGAAACATTCCAGCGACGTTGAATGTGGAATTCTGGGTGATTCGCATTTCTCGCACACAACCCGAAACTCTCTCGTCTCTGTTTTCATCCCTCCAACCATTTTCCTCATAAGCAATTAAACTCTTTTTTCTTTTTTTCAATTTTCCGTTAATGTCCTTTCCTCCCTTCAACCTCCAGCTTTTCCTCTGTACACAACATAACAACAATTAAAAACATTTTCTTTTTCTTTCCATTTCAACAAAGAACCAAGAAAATCATCGTGCATTGTTGTTGTTATTGTTGTTGTGCCCTGTTTCCATTGCAGCAATTTCTCCACATGGTTTTAGCCTTTTCACCATTCAAAGATCAAGGAATTTGAGCTCTTTTCCTTCATTCCTATTCATCTACCTCCTTTTCGATTCAATTGTCAACCCTCTGATTGGGGAATCCCTTCTTTGTTTGTTCTTCCGTGGTTATACATTTCCTGTTCATTTATTCATTTACAGCGCTTCATTTTCAAAATCTCAAGCCATTTGGCATTTGAGTTTTAAGATTCTACAATCTGGGAGAGGTGTAAAGCATTGAATTTTGAAATCCACAGCAGAATTTTTTATATTGGTTCTTTATGAATTCTTGTTACGTGGGATGTAAGTTGATAGACACATTGCAACATTGATTTTGTTGGTGGATTTTCCACTGGCATGATCGCCTTTGTAGTAGGGTGGGAGCTTCTGGGTTCCCAAGAAAATACAAGTGTACTACCCAGTTGCTTAACAAGTTTCACAAAAAGGTAGTGATTTGTTGATTGATTGGAGAAACAAAGCAACACCCCTTTTGTAAGAATA


Gene Sequence:
>Vu_34343(+)
ATGGGGTGCATCTGCTCAAAAGAAAACAAAGACAAAGTTGATGAGTATGAGAAAGAGAAAGAAAGAGAAAAAGAGTCGAACAAGTCTTCAGTGCAACTGGTTGCTCCTTCTGTCTCAACTGCACAGTCAGATAGTACTAGAGGCACGGATGGTTCGGTTCCCCTTATTGTTGACACATCAACACAAGCAATTAGAGGGTCTGTCGTAGTGACTGCAGAGGATAAAAGCAACCACTCAGATGCCACACAAGGCCAGCAGAAGAGGCGCGTGACAGTGAGTTGTGGTGTAGATGACAGAATGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTCCGGATGGCCGATTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGGCCAAGTTAGTTTCAAAATATCACTTCTTCATGCCACCCTTTTTCTTTATAAATGTTTCAACTAGTTTACATGCAAGTGAATGCTGTGTGTGCAGGTTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCTTTGAAGAAGGTTCGGTTTTCAAGTGCAGATGTGGAAAGTGTTCGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCCAATGTCATGAAGCTCGAGGGTCTTGTTACTTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTCGCTGGGCTAGCAACTGTACATGGCTTGAAGTTAACTGAATCACAGGTACATGCCCTGCATGTTAAGACTTACAAGTACTTTTAAATAGCTACTATTCTTTAACAAATTTCTAAGGAGTTAATGATGATTACCTCGAGTGGATTCTGGTCACAGGCAGCTTTTCTTTCATTTTTAAACCAACAAGAGTTGAGATGCATTCTGTTGAAAGTATAAATTGAAGTTACATTGTGGTTAAGGAAAAGAAGAGTGGATGGCTATTAAGTTGTTTGGAAAAATGAATTGTAGTTTTTTAGCTGTACGTTATTCAATTATTTTCTTGTTCGCTTTGCAGATAAAATGTTTTCTGCAGCAACTGCTTCGTGGGCTTCAACATTGCCACAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTTATTGACAACAATGGAAATCTTAAAATAGGAGATTTTGGTCTTGCAACAGTATATGATCCTGAAAAAAAGCAGCCATTGACTAGTCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGTGAAGCAATTGACTTGTGGAGTGTTGGTTGCATTCTGGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTTGGTTTCATGAACCAATGTTCATAATTAGCACTTGTACTGAAATGGTGTCGTTTTTCTAAAAATTCTGACTACTTCTGTCATTTGATTTAACATTTTCTGACTACGTGGTGTGGTGTGGTGTGGTGTGTGCCATTCTTCCTAATTTTACTCATTTTAAGCCTGTGTTTTAGTTTATATGTTCAAGCCAAATCCAAGCGTAAAAACTGTACAGATGTCACTTTCAAAATAAGCACATTGAAGTAGAAGGTTCCTAACCAAGTAAACGGAAGAGCATAATAAGCATGGAATTTCTATTACTACTAAGCACAGACAAAGAGTTGCAATTTAACTTTGAGAGTGATTTAATTTATGCAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCACCATCTGAAGACTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAGCCACAACACACTTACAACCGCCAAATTTCAGAAACATTTGAAAAATTTTCTTCTCCGGCATTGGCTCTTGTTGATAAGCTTCTGACAATAGAACCAGAGGCTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGGTAATGCTGTGAAGCCTTTTATTCTTATTTTTCAGACATACTTTACATGGAAATTAATCCTGTTTTTATGCTGTTATATAAGCACTTTTAGTGCTTTATTAAATGAAAACATCTGACAGCTATTAAAAGTTTTGAATTTTACTCAAGAGCCCCAACTGACTTTTTCCCCCCTTACATTCTTTAAGGCTTTTCTGACTGTAGTTTTTCAAAGTGATGATGCTCTATTTACTACCACTGTTTTGGATATCCTACTTATCATATTATATTCATGTTACATATTTGCTAGTTCTTCACTACAAACCCCTTACCTTGTGAACCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAAGCGTCGACAAAAGGAAGCTACAAGGTATTAAAAGTTTTATTTCTCTACAAAGTAACATAACCATATAATAACAGTGACCAAACTCTGATGGAGATACATGTTATAGTGGAAGCCAAGACTGTGTTAAAACATTTGCATCCCATTAAAGATTACATTGAACGTTGTGTTGGTACCGTTTAATGCTGCGATAAAAAGTGCCATATTCATAGAACTTCACCTTTATTTTCAATCAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCATCGGTTTTAAGAGGAGCAGGAGATACCAAGGCACTGGGTTCGCCACAGTATAACGCTCAGGGAAATATATCTATGCTGGTATGTTTATGCTTCTAAACATATATTTCCATGGAGATTGATTATTATTGACAACTTTATTCGATTTGACGGGGTCATGAATACTTCAACATTGGCAGAGGAAACCAAACAGTATAATGTGCCGTCAAAAATATCTGTGCCAGGAGAATAGGGAGGCCAAGGAGAACGGTGAAGGAGGCAGAGTAAGTGTACACGGTGGCTTCACGCATGCTGCTACAATGACGCGAGGCAGTGTAGCAGGATCATCCACATTGAGCAAGAGAGTAGAACCATCTTTGAAGAATCAGAGGTCTCATTTGAATCCTGCAACAGCAGATTTATGTACCTCTGCCCTCAAAAAGGAACCAGACTCGTCTGCTGTTGAATCCACCATGGTAAACAACAATCTAACTTCTCTTTATTACCACCTTATTTCTGGTTTGCAACCTTGTCAGTAGTCACAGAACCTACCATACAACCTTAAGATTTAAGGTTGGAGAGTATTGTGAATGTTAAAAATGTTAAAAACAAAGTTAGGAGAGAAGATCACACAAAAAGTAGTAAGTCAACTTTTCTACGGAGACTGATCATAAGTAAAGGTTGCGAATATTTCATACCCAATGTTATTAAAAGAAAGTAAAACTGAGATACATATAATAGGAACATAACATAACAGTTTTTTTATATACCTGTTGTGGTGTGATTTCAGGGTTATATGCCGAAGAAAAATAGGATACACTACTCTGGACCATTGATGCCTCCGGGTGGGAACCTCGATGACATGCTTCGAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCTGTAA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1504780